Wall clock time and date at job start Sat Apr 11 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47116 * 2 1 4 4 C 1.50706 * 109.46861 * 239.99956 * 2 1 3 5 5 C 1.38259 * 119.96364 * 26.23965 * 4 2 1 6 6 C 1.38213 * 120.06591 * 179.97438 * 5 4 2 7 7 C 1.38416 * 120.00317 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.03703 * 180.02562 * 7 6 5 9 9 C 1.38647 * 119.92854 * 359.97438 * 7 6 5 10 10 F 1.35100 * 120.03686 * 179.97438 * 9 7 6 11 11 C 1.38211 * 119.96140 * 205.96441 * 4 2 1 12 12 N 1.46502 * 109.47036 * 120.00210 * 2 1 3 13 13 C 1.46498 * 119.99773 * 54.03661 * 12 2 1 14 14 C 1.34769 * 119.99992 * 234.03831 * 12 2 1 15 15 O 1.21592 * 119.99809 * 359.72058 * 14 12 2 16 16 N 1.34772 * 120.00216 * 179.97438 * 14 12 2 17 17 C 1.46502 * 120.00379 * 179.72312 * 16 14 12 18 18 C 1.50703 * 109.47095 * 180.02562 * 17 16 14 19 19 O 1.21286 * 119.99922 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99521 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99741 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00125 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00026 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00061 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00066 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46872 * 90.00137 * 25 23 21 27 27 H 1.48501 * 109.47195 * 210.00264 * 25 23 21 28 28 H 1.48503 * 109.47127 * 330.00617 * 25 23 21 29 29 H 1.08993 * 109.46858 * 300.00189 * 1 2 3 30 30 H 1.09002 * 109.46609 * 59.99930 * 1 2 3 31 31 H 1.08995 * 109.47433 * 179.97438 * 1 2 3 32 32 H 1.07991 * 119.96605 * 359.97438 * 5 4 2 33 33 H 1.08005 * 120.00012 * 179.97438 * 6 5 4 34 34 H 1.08003 * 120.00220 * 359.97438 * 11 4 2 35 35 H 1.09003 * 109.47520 * 264.70164 * 13 12 2 36 36 H 1.09001 * 109.47689 * 24.70286 * 13 12 2 37 37 H 1.09006 * 109.46949 * 144.70564 * 13 12 2 38 38 H 0.97005 * 119.99817 * 359.72882 * 16 14 12 39 39 H 1.09001 * 109.46798 * 299.99972 * 17 16 14 40 40 H 1.08996 * 109.46784 * 60.00081 * 17 16 14 41 41 H 0.97003 * 120.00609 * 0.02562 * 20 18 17 42 42 H 0.97002 * 119.99784 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 6 1.2496 -0.7564 -2.3692 6 6 1.7083 -1.4069 -3.4991 7 6 2.9524 -2.0137 -3.4913 8 9 3.4017 -2.6493 -4.5955 9 6 3.7373 -1.9676 -2.3493 10 9 4.9517 -2.5596 -2.3391 11 6 3.2774 -1.3104 -1.2213 12 7 2.0184 -0.6907 1.1962 13 6 1.5600 -2.0495 1.4958 14 6 2.8892 -0.0760 2.0209 15 8 3.2735 1.0499 1.7694 16 7 3.3380 -0.7111 3.1216 17 6 4.2893 -0.0453 4.0149 18 6 4.6297 -0.9633 5.1605 19 8 4.1267 -2.0651 5.2248 20 7 5.4921 -0.5595 6.1142 21 6 5.8014 -1.3944 7.1567 22 1 5.3536 -2.3755 7.2140 23 6 6.6910 -0.9783 8.1397 24 7 7.2356 0.2157 8.0703 25 14 7.1118 -2.1156 9.5606 26 1 8.2879 -2.9466 9.1978 27 1 7.4297 -1.3067 10.7647 28 1 5.9525 -2.9977 9.8486 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2787 -0.2835 -2.3758 33 1 1.0958 -1.4425 -4.3879 34 1 3.8899 -1.2697 -0.3327 35 1 0.7191 -2.0050 2.1879 36 1 1.2461 -2.5387 0.5737 37 1 2.3738 -2.6158 1.9488 38 1 3.0313 -1.6092 3.3223 39 1 5.1971 0.1980 3.4626 40 1 3.8435 0.8706 4.4027 41 1 5.8935 0.3221 6.0634 42 1 7.8563 0.5063 8.7568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358319566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:03 Heat of formation + Delta-G solvation = -119.859287 kcal Electronic energy + Delta-G solvation = -29083.737110 eV Core-core repulsion = 24507.397747 eV Total energy + Delta-G solvation = -4576.339363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.71688 -48.78940 -40.68527 -39.31109 -38.22487 -36.12740 -34.55860 -33.82566 -32.36334 -31.38617 -31.30176 -29.19323 -27.60720 -27.03343 -24.74482 -23.96846 -23.46655 -21.50460 -19.74259 -19.64940 -18.49722 -18.29833 -17.88878 -17.42454 -17.14458 -16.58802 -16.37128 -15.95354 -15.58250 -15.20377 -15.11575 -14.91233 -14.69812 -14.47897 -14.39034 -14.09502 -13.83690 -13.65446 -13.41640 -13.18129 -13.10314 -12.63824 -12.58764 -12.37431 -12.12536 -12.04506 -11.89390 -11.66326 -11.64371 -11.32248 -11.13649 -10.47114 -10.33466 -10.08782 -9.65035 -9.41532 -9.06851 -8.95287 -8.64969 -8.62218 -8.11556 -6.52732 -3.94816 0.51702 0.64396 2.52652 3.02365 3.10646 3.21379 3.23219 3.26521 3.45149 3.72993 3.92738 4.01691 4.11046 4.18766 4.25358 4.60230 4.71258 4.80906 4.86118 4.93263 4.99484 5.15936 5.16363 5.30737 5.40315 5.45981 5.50319 5.54616 5.59067 5.69654 5.80442 5.86993 5.92759 5.97148 6.05753 6.36937 6.39166 6.68662 6.90397 7.44767 7.90806 8.05181 8.43368 8.66552 9.03234 9.37871 9.85516 10.64110 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.002213 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.925357 B =12649.355905 C =13469.654028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.194 3.806 3 H 0.122 0.878 4 C -0.075 4.075 5 C -0.096 4.096 6 C -0.125 4.125 7 C 0.062 3.938 8 F -0.131 7.131 9 C 0.071 3.929 10 F -0.127 7.127 11 C -0.106 4.106 12 N -0.629 5.629 13 C 0.076 3.924 14 C 0.706 3.294 15 O -0.593 6.593 16 N -0.721 5.721 17 C 0.126 3.874 18 C 0.428 3.572 19 O -0.598 6.598 20 N -0.548 5.548 21 C -0.305 4.305 22 H 0.105 0.895 23 C 0.026 3.974 24 N -0.894 5.894 25 Si 0.933 3.067 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.269 1.269 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.408 0.592 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 -0.745 -21.038 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.090 3.910 3 H 0.139 0.861 4 C -0.077 4.077 5 C -0.115 4.115 6 C -0.144 4.144 7 C 0.042 3.958 8 F -0.109 7.109 9 C 0.050 3.950 10 F -0.106 7.106 11 C -0.125 4.125 12 N -0.367 5.367 13 C -0.067 4.067 14 C 0.407 3.593 15 O -0.472 6.472 16 N -0.379 5.379 17 C -0.002 4.002 18 C 0.214 3.786 19 O -0.485 6.485 20 N -0.183 5.183 21 C -0.434 4.434 22 H 0.123 0.877 23 C -0.177 4.177 24 N -0.534 5.534 25 Si 0.760 3.240 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.193 1.193 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.247 0.753 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.887 -0.614 -21.008 25.191 hybrid contribution 0.829 -0.746 0.602 1.268 sum -13.058 -1.360 -20.406 24.265 Atomic orbital electron populations 1.22225 0.93597 1.02979 1.03120 1.19734 0.94079 0.97277 0.79906 0.86057 1.20251 0.93412 0.97753 0.96263 1.21050 1.00401 0.98752 0.91283 1.21063 0.93997 0.98822 1.00500 1.17741 0.94939 1.00045 0.83091 1.91529 1.89211 1.79700 1.50479 1.17711 0.82611 0.99971 0.94667 1.91554 1.40610 1.81519 1.96881 1.20985 0.96861 0.97330 0.97348 1.46984 1.47978 1.16644 1.25091 1.21745 1.00525 0.82652 1.01819 1.15801 0.79227 0.84206 0.80097 1.90908 1.62496 1.18186 1.75635 1.44929 1.48165 1.20619 1.24226 1.20819 0.93111 0.95476 0.90793 1.19738 0.84825 0.88651 0.85404 1.90486 1.56908 1.22618 1.78518 1.41787 1.38176 1.17505 1.20840 1.19723 1.24212 0.99417 1.00091 0.87683 1.25331 0.96362 0.96749 0.99275 1.69616 1.29959 1.18095 1.35757 0.85813 0.79035 0.79440 0.79744 1.20256 1.20788 1.19322 0.91217 0.90826 0.91701 0.83669 0.83600 0.83756 0.92198 0.90769 0.90990 0.75264 0.89967 0.89913 0.77003 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 8.29 37.16 0.31 -0.67 16 2 C 0.19 1.77 3.02 -69.08 -0.21 1.56 16 3 H 0.12 1.32 6.92 -51.93 -0.36 0.96 16 4 C -0.08 -0.64 4.87 -104.62 -0.51 -1.15 16 5 C -0.10 -0.61 9.13 -39.58 -0.36 -0.97 16 6 C -0.13 -0.87 10.02 -39.53 -0.40 -1.27 16 7 C 0.06 0.61 7.31 -39.36 -0.29 0.33 16 8 F -0.13 -1.44 17.18 2.25 0.04 -1.40 16 9 C 0.07 0.80 7.31 -39.36 -0.29 0.51 16 10 F -0.13 -1.67 17.18 2.25 0.04 -1.63 16 11 C -0.11 -1.14 9.12 -39.52 -0.36 -1.50 16 12 N -0.63 -7.04 1.87 -181.00 -0.34 -7.38 16 13 C 0.08 0.68 8.78 59.85 0.53 1.21 16 14 C 0.71 10.81 8.07 -86.93 -0.70 10.11 16 15 O -0.59 -10.85 15.68 5.28 0.08 -10.77 16 16 N -0.72 -11.77 5.39 -66.41 -0.36 -12.12 16 17 C 0.13 2.30 6.15 -5.19 -0.03 2.27 16 18 C 0.43 9.67 7.85 -10.99 -0.09 9.58 16 19 O -0.60 -15.03 15.24 5.55 0.08 -14.95 16 20 N -0.55 -13.46 5.29 -10.96 -0.06 -13.52 16 21 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 22 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 24 N -0.89 -23.75 13.05 55.50 0.72 -23.03 16 25 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.29 6.55 -51.93 -0.34 -0.05 16 31 H 0.06 0.34 7.37 -51.93 -0.38 -0.04 16 32 H 0.15 0.51 6.07 -52.49 -0.32 0.19 16 33 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 34 H 0.14 1.77 7.34 -52.48 -0.39 1.38 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.53 7.30 -51.93 -0.38 0.15 16 37 H 0.07 0.71 6.66 -51.93 -0.35 0.36 16 38 H 0.41 6.53 5.29 -40.82 -0.22 6.31 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.40 9.36 7.90 -40.82 -0.32 9.04 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -31.93 364.35 -6.63 -38.56 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -4.67 Total: 13.14 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: -2.64 Total: 12.21 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.03 Total: -56.05 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.17 Total: -25.72 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.93 -6.63 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.298 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds