Wall clock time and date at job start Sat Apr 11 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47116 * 2 1 4 4 C 1.50706 * 109.46861 * 239.99956 * 2 1 3 5 5 C 1.38259 * 119.96364 * 26.23965 * 4 2 1 6 6 C 1.38213 * 120.06591 * 179.97438 * 5 4 2 7 7 C 1.38416 * 120.00317 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.03703 * 180.02562 * 7 6 5 9 9 C 1.38647 * 119.92854 * 359.97438 * 7 6 5 10 10 F 1.35100 * 120.03686 * 179.97438 * 9 7 6 11 11 C 1.38211 * 119.96140 * 205.96441 * 4 2 1 12 12 N 1.46502 * 109.47036 * 120.00210 * 2 1 3 13 13 C 1.46498 * 119.99773 * 54.03661 * 12 2 1 14 14 C 1.34769 * 119.99992 * 234.03831 * 12 2 1 15 15 O 1.21592 * 119.99809 * 359.72058 * 14 12 2 16 16 N 1.34772 * 120.00216 * 179.97438 * 14 12 2 17 17 C 1.46502 * 120.00379 * 179.72312 * 16 14 12 18 18 C 1.50703 * 109.47095 * 180.02562 * 17 16 14 19 19 O 1.21286 * 119.99922 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99521 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99741 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00125 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00026 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00061 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00066 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46872 * 90.00137 * 25 23 21 27 27 H 1.48501 * 109.47195 * 210.00264 * 25 23 21 28 28 H 1.48503 * 109.47127 * 330.00617 * 25 23 21 29 29 H 1.08993 * 109.46858 * 300.00189 * 1 2 3 30 30 H 1.09002 * 109.46609 * 59.99930 * 1 2 3 31 31 H 1.08995 * 109.47433 * 179.97438 * 1 2 3 32 32 H 1.07991 * 119.96605 * 359.97438 * 5 4 2 33 33 H 1.08005 * 120.00012 * 179.97438 * 6 5 4 34 34 H 1.08003 * 120.00220 * 359.97438 * 11 4 2 35 35 H 1.09003 * 109.47520 * 264.70164 * 13 12 2 36 36 H 1.09001 * 109.47689 * 24.70286 * 13 12 2 37 37 H 1.09006 * 109.46949 * 144.70564 * 13 12 2 38 38 H 0.97005 * 119.99817 * 359.72882 * 16 14 12 39 39 H 1.09001 * 109.46798 * 299.99972 * 17 16 14 40 40 H 1.08996 * 109.46784 * 60.00081 * 17 16 14 41 41 H 0.97003 * 120.00609 * 0.02562 * 20 18 17 42 42 H 0.97002 * 119.99784 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 6 1.2496 -0.7564 -2.3692 6 6 1.7083 -1.4069 -3.4991 7 6 2.9524 -2.0137 -3.4913 8 9 3.4017 -2.6493 -4.5955 9 6 3.7373 -1.9676 -2.3493 10 9 4.9517 -2.5596 -2.3391 11 6 3.2774 -1.3104 -1.2213 12 7 2.0184 -0.6907 1.1962 13 6 1.5600 -2.0495 1.4958 14 6 2.8892 -0.0760 2.0209 15 8 3.2735 1.0499 1.7694 16 7 3.3380 -0.7111 3.1216 17 6 4.2893 -0.0453 4.0149 18 6 4.6297 -0.9633 5.1605 19 8 4.1267 -2.0651 5.2248 20 7 5.4921 -0.5595 6.1142 21 6 5.8014 -1.3944 7.1567 22 1 5.3536 -2.3755 7.2140 23 6 6.6910 -0.9783 8.1397 24 7 7.2356 0.2157 8.0703 25 14 7.1118 -2.1156 9.5606 26 1 8.2879 -2.9466 9.1978 27 1 7.4297 -1.3067 10.7647 28 1 5.9525 -2.9977 9.8486 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2787 -0.2835 -2.3758 33 1 1.0958 -1.4425 -4.3879 34 1 3.8899 -1.2697 -0.3327 35 1 0.7191 -2.0050 2.1879 36 1 1.2461 -2.5387 0.5737 37 1 2.3738 -2.6158 1.9488 38 1 3.0313 -1.6092 3.3223 39 1 5.1971 0.1980 3.4626 40 1 3.8435 0.8706 4.4027 41 1 5.8935 0.3221 6.0634 42 1 7.8563 0.5063 8.7568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358319566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:02 Heat of formation + Delta-G solvation = -140.304543 kcal Electronic energy + Delta-G solvation = -29084.623683 eV Core-core repulsion = 24507.397747 eV Total energy + Delta-G solvation = -4577.225936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.56201 -49.64734 -41.70857 -40.43885 -39.80538 -37.08438 -36.26650 -35.42781 -33.45295 -33.14188 -32.00295 -29.91737 -29.04992 -27.90745 -26.44768 -24.86924 -24.17414 -22.43265 -21.39349 -20.79807 -20.13457 -19.40559 -19.08181 -18.21658 -17.95760 -17.61753 -17.39263 -17.20427 -17.02434 -16.59265 -16.23270 -16.08261 -16.01596 -15.61666 -15.52582 -15.29953 -14.99463 -14.84111 -14.41355 -14.12050 -13.96972 -13.79135 -13.54817 -13.54362 -13.28894 -13.17894 -12.97112 -12.91348 -12.65292 -12.46190 -12.30079 -12.12951 -11.97339 -11.57644 -11.34872 -10.56610 -10.32393 -10.11833 -10.10085 -9.75310 -9.60713 -8.51555 -6.01763 -0.19690 -0.03910 1.35934 1.41495 1.48549 1.56426 1.88571 2.04581 2.26533 2.33218 2.72437 2.84495 3.15675 3.16136 3.24722 3.42351 3.61516 4.00444 4.03377 4.11257 4.19502 4.21648 4.37486 4.42545 4.44241 4.59552 4.62662 4.76156 4.81170 4.85935 4.87983 4.98788 5.09951 5.19126 5.29142 5.37127 5.38153 5.56773 5.69874 5.84656 5.91607 6.47171 6.85054 7.02858 7.39896 7.47672 7.93551 8.65387 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.002213 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.925357 B =12649.355905 C =13469.654028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.190 3.810 3 H 0.102 0.898 4 C -0.074 4.074 5 C -0.073 4.073 6 C -0.108 4.108 7 C 0.049 3.951 8 F -0.141 7.141 9 C 0.042 3.958 10 F -0.148 7.148 11 C -0.120 4.120 12 N -0.620 5.620 13 C 0.073 3.927 14 C 0.704 3.296 15 O -0.627 6.627 16 N -0.724 5.724 17 C 0.140 3.860 18 C 0.434 3.566 19 O -0.624 6.624 20 N -0.559 5.559 21 C -0.336 4.336 22 H 0.087 0.913 23 C -0.011 4.011 24 N -0.916 5.916 25 Si 0.997 3.003 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.269 1.269 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.188 0.812 33 H 0.182 0.818 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.410 0.590 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.399 0.601 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.615 -0.671 -22.288 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.087 3.913 3 H 0.119 0.881 4 C -0.076 4.076 5 C -0.091 4.091 6 C -0.127 4.127 7 C 0.029 3.971 8 F -0.119 7.119 9 C 0.022 3.978 10 F -0.127 7.127 11 C -0.139 4.139 12 N -0.357 5.357 13 C -0.069 4.069 14 C 0.405 3.595 15 O -0.508 6.508 16 N -0.383 5.383 17 C 0.012 3.988 18 C 0.221 3.779 19 O -0.512 6.512 20 N -0.195 5.195 21 C -0.466 4.466 22 H 0.105 0.895 23 C -0.212 4.212 24 N -0.556 5.556 25 Si 0.820 3.180 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.194 1.194 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.205 0.795 33 H 0.199 0.801 34 H 0.137 0.863 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.249 0.751 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.233 0.767 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.457 -0.548 -22.296 27.717 hybrid contribution 1.548 -0.756 0.891 1.940 sum -14.909 -1.304 -21.404 26.117 Atomic orbital electron populations 1.22234 0.90435 1.04314 1.04274 1.19953 0.96323 0.95986 0.79024 0.88057 1.20274 0.92775 0.97449 0.97064 1.21459 1.01181 0.96985 0.89509 1.21479 0.92579 0.96761 1.01832 1.18038 0.95975 1.00750 0.82293 1.91502 1.89551 1.80074 1.50802 1.17991 0.82530 1.01403 0.95877 1.91488 1.42035 1.82134 1.97064 1.20842 0.97813 0.98778 0.96468 1.47062 1.46520 1.17301 1.24769 1.21902 1.00397 0.81308 1.03337 1.15921 0.79614 0.83883 0.80094 1.90879 1.63859 1.19692 1.76386 1.44866 1.48182 1.20670 1.24590 1.20594 0.94076 0.94642 0.89527 1.20396 0.83313 0.88646 0.85566 1.90461 1.57477 1.24017 1.79221 1.41837 1.38988 1.17504 1.21133 1.19732 1.25624 0.99429 1.01777 0.89544 1.26137 0.95668 0.98172 1.01199 1.69683 1.30153 1.19180 1.36614 0.84869 0.78666 0.77636 0.76827 1.19652 1.19620 1.19357 0.92117 0.87705 0.90187 0.79500 0.80110 0.86322 0.90818 0.88379 0.92322 0.75071 0.89309 0.88864 0.76706 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 8.29 71.98 0.60 -0.69 16 2 C 0.19 3.11 3.02 44.25 0.13 3.25 16 3 H 0.10 2.13 6.92 -2.39 -0.02 2.11 16 4 C -0.07 -1.12 4.87 -19.86 -0.10 -1.22 16 5 C -0.07 -0.60 9.13 22.27 0.20 -0.40 16 6 C -0.11 -1.09 10.02 22.31 0.22 -0.87 16 7 C 0.05 0.92 7.31 22.41 0.16 1.08 16 8 F -0.14 -3.00 17.18 44.97 0.77 -2.22 16 9 C 0.04 0.97 7.31 22.41 0.16 1.13 16 10 F -0.15 -4.19 17.18 44.97 0.77 -3.42 16 11 C -0.12 -2.60 9.12 22.31 0.20 -2.39 16 12 N -0.62 -13.43 1.87 -844.82 -1.58 -15.01 16 13 C 0.07 1.21 8.78 127.77 1.12 2.33 16 14 C 0.70 21.76 8.07 179.06 1.44 23.21 16 15 O -0.63 -23.30 15.68 -4.01 -0.06 -23.36 16 16 N -0.72 -23.99 5.39 -482.30 -2.60 -26.60 16 17 C 0.14 5.19 6.15 85.63 0.53 5.72 16 18 C 0.43 20.04 7.85 87.66 0.69 20.73 16 19 O -0.62 -32.05 15.24 -3.05 -0.05 -32.10 16 20 N -0.56 -28.15 5.29 -306.99 -1.62 -29.77 16 21 C -0.34 -18.53 9.68 84.04 0.81 -17.72 16 22 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 24 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 25 Si 1.00 41.79 29.55 68.60 2.03 43.82 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.24 6.55 -2.39 -0.02 0.22 16 31 H 0.08 0.46 7.37 -2.39 -0.02 0.45 16 32 H 0.19 0.04 6.07 -2.92 -0.02 0.02 16 33 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 34 H 0.12 3.14 7.34 -2.91 -0.02 3.12 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.17 7.30 -2.39 -0.02 1.15 16 37 H 0.06 1.15 6.66 -2.38 -0.02 1.14 16 38 H 0.41 13.34 5.29 -92.70 -0.49 12.85 16 39 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 42 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -72.08 364.35 4.48 -67.60 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.12 Total: 35.55 kcal Atomic # 6 Polarization: 27.40 SS G_CDS: 6.65 Total: 34.06 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -5.52 Total: -119.92 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -0.11 Total: -55.46 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 1.55 Total: -5.65 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -72.08 4.48 -67.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.703 kcal (2) G-P(sol) polarization free energy of solvation -72.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds