Wall clock time and date at job start Sat Apr 11 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21303 * 119.99912 * 2 1 4 4 N 1.34781 * 120.00541 * 179.97438 * 2 1 3 5 5 C 1.40155 * 120.00042 * 185.49016 * 4 2 1 6 6 C 1.38718 * 120.06340 * 34.25785 * 5 4 2 7 7 C 1.38356 * 120.00116 * 180.02562 * 6 5 4 8 8 F 1.35093 * 119.93512 * 179.97438 * 7 6 5 9 9 C 1.38691 * 120.12102 * 359.94863 * 7 6 5 10 10 F 1.35105 * 119.93352 * 180.02562 * 9 7 6 11 11 C 1.38351 * 120.13196 * 0.04973 * 9 7 6 12 12 C 1.38710 * 120.00071 * 359.97438 * 11 9 7 13 13 N 1.40152 * 120.06422 * 179.73080 * 12 11 9 14 14 C 1.34773 * 120.00328 * 25.55464 * 13 12 11 15 15 O 1.21297 * 120.00017 * 356.14312 * 14 13 12 16 16 C 1.50699 * 120.00101 * 176.13972 * 14 13 12 17 17 H 1.08998 * 109.47357 * 320.00452 * 16 14 13 18 18 N 1.46905 * 109.47206 * 200.00108 * 16 14 13 19 19 C 1.53007 * 109.47221 * 80.00123 * 16 14 13 20 20 C 1.52995 * 109.47030 * 184.99793 * 19 16 14 21 21 C 1.50705 * 109.47000 * 179.97438 * 20 19 16 22 22 H 1.08008 * 119.99844 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00200 * 180.02562 * 21 20 19 24 24 N 1.31509 * 119.99587 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00074 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47416 * 89.99575 * 25 23 21 27 27 H 1.48497 * 109.47076 * 210.00133 * 25 23 21 28 28 H 1.48504 * 109.47248 * 329.99765 * 25 23 21 29 29 H 1.08999 * 109.47386 * 269.99696 * 1 2 3 30 30 H 1.08994 * 109.47212 * 30.00183 * 1 2 3 31 31 H 1.09005 * 109.46800 * 150.00012 * 1 2 3 32 32 H 0.97000 * 119.99715 * 5.49303 * 4 2 1 33 33 H 1.07999 * 119.99675 * 0.03693 * 6 5 4 34 34 H 1.08005 * 119.99912 * 179.97438 * 11 9 7 35 35 H 0.97008 * 119.99680 * 205.56096 * 13 12 11 36 36 H 1.00899 * 110.99938 * 176.04833 * 18 16 14 37 37 H 1.00898 * 110.99452 * 299.99882 * 18 16 14 38 38 H 1.08997 * 109.46696 * 305.00235 * 19 16 14 39 39 H 1.09000 * 109.46694 * 65.00141 * 19 16 14 40 40 H 1.08997 * 109.47742 * 299.99801 * 20 19 16 41 41 H 1.09000 * 109.47098 * 60.00595 * 20 19 16 42 42 H 0.97009 * 119.99575 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.5777 -1.1698 0.1167 6 6 4.2122 -0.2119 0.8940 7 6 5.5911 -0.2154 1.0073 8 9 6.2076 0.7183 1.7643 9 6 6.3414 -1.1760 0.3456 10 9 7.6877 -1.1762 0.4593 11 6 5.7140 -2.1338 -0.4310 12 6 4.3319 -2.1349 -0.5487 13 7 3.6954 -3.1011 -1.3396 14 6 4.2910 -4.2896 -1.5613 15 8 5.4075 -4.4973 -1.1352 16 6 3.5699 -5.3605 -2.3386 17 1 2.5190 -5.3740 -2.0496 18 7 4.1745 -6.6675 -2.0482 19 6 3.6832 -5.0676 -3.8361 20 6 2.8481 -6.0828 -4.6189 21 6 2.9592 -5.7940 -6.0938 22 1 3.5645 -4.9685 -6.4383 23 6 2.2872 -6.5828 -7.0033 24 7 1.5497 -7.5875 -6.5837 25 14 2.4255 -6.2251 -8.8315 26 1 3.5715 -6.9803 -9.3984 27 1 1.1732 -6.6403 -9.5132 28 1 2.6415 -4.7703 -9.0364 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6994 -2.0053 -0.0795 33 1 3.6297 0.5364 1.4109 34 1 6.3005 -2.8806 -0.9457 35 1 2.8261 -2.9144 -1.7276 36 1 3.6683 -7.4100 -2.5070 37 1 5.1494 -6.6805 -2.3076 38 1 3.3156 -4.0616 -4.0383 39 1 4.7265 -5.1418 -4.1428 40 1 3.2157 -7.0888 -4.4167 41 1 1.8048 -6.0087 -4.3121 42 1 1.0772 -8.1428 -7.2237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424112122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:15 Heat of formation + Delta-G solvation = -136.514038 kcal Electronic energy + Delta-G solvation = -29257.778646 eV Core-core repulsion = 24680.717078 eV Total energy + Delta-G solvation = -4577.061567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.54798 -48.61757 -41.38356 -40.17526 -38.40350 -35.81075 -35.19384 -34.72901 -32.99582 -31.23274 -30.15406 -30.05171 -28.62616 -26.65442 -24.51970 -23.96843 -22.58176 -21.14644 -21.05705 -20.19801 -18.98983 -18.28420 -17.98677 -17.49433 -16.76430 -16.65545 -16.39203 -16.31447 -15.77329 -15.35632 -15.06971 -15.01203 -14.97618 -14.60281 -14.44264 -14.36173 -14.01775 -13.68256 -13.57631 -13.40913 -13.19630 -13.04676 -12.90139 -12.52738 -12.31244 -12.03635 -11.88378 -11.24343 -11.03586 -10.81628 -10.78084 -10.54090 -10.36290 -10.15601 -10.06675 -9.50110 -9.35914 -8.89139 -8.55017 -8.43393 -8.14457 -6.19179 -4.22835 0.52393 0.74788 2.06470 2.40172 2.43537 2.66362 3.17234 3.20623 3.27954 3.30556 3.67462 4.04993 4.21481 4.30847 4.34794 4.58085 4.71599 4.84568 4.88602 4.91599 4.94212 5.10227 5.17331 5.29015 5.35919 5.47899 5.53903 5.58996 5.74420 5.95058 6.05096 6.07425 6.30352 6.58212 6.68311 6.78545 6.98832 7.30790 7.37442 7.46360 7.57627 7.68884 7.77274 7.92726 8.18510 8.82946 9.43069 10.91545 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.002722 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.925349 B =10283.534475 C =11526.439711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.521 6.521 4 N -0.672 5.672 5 C 0.131 3.869 6 C -0.108 4.108 7 C 0.063 3.937 8 F -0.128 7.128 9 C 0.079 3.921 10 F -0.125 7.125 11 C -0.129 4.129 12 C 0.157 3.843 13 N -0.670 5.670 14 C 0.527 3.473 15 O -0.507 6.507 16 C 0.078 3.922 17 H 0.102 0.898 18 N -0.830 5.830 19 C -0.140 4.140 20 C 0.025 3.975 21 C -0.527 4.527 22 H 0.055 0.945 23 C 0.060 3.940 24 N -0.892 5.892 25 Si 0.893 3.107 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.414 0.586 33 H 0.158 0.842 34 H 0.182 0.818 35 H 0.414 0.586 36 H 0.359 0.641 37 H 0.348 0.652 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 11.936 15.759 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.301 3.699 3 O -0.396 6.396 4 N -0.320 5.320 5 C 0.034 3.966 6 C -0.130 4.130 7 C 0.041 3.959 8 F -0.106 7.106 9 C 0.057 3.943 10 F -0.103 7.103 11 C -0.150 4.150 12 C 0.059 3.941 13 N -0.315 5.315 14 C 0.316 3.684 15 O -0.380 6.380 16 C -0.037 4.037 17 H 0.120 0.880 18 N -0.363 5.363 19 C -0.180 4.180 20 C -0.012 4.012 21 C -0.565 4.565 22 H 0.073 0.927 23 C -0.142 4.142 24 N -0.531 5.531 25 Si 0.720 3.280 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.198 1.198 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.251 0.749 33 H 0.176 0.824 34 H 0.198 0.802 35 H 0.251 0.749 36 H 0.175 0.825 37 H 0.161 0.839 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.960 12.502 16.768 20.938 hybrid contribution -0.208 -0.049 -2.206 2.217 sum -1.168 12.453 14.562 19.196 Atomic orbital electron populations 1.21911 0.89992 1.05810 1.05416 1.21148 0.91118 0.82835 0.74766 1.90782 1.70529 1.31057 1.47220 1.43613 1.04399 1.10460 1.73486 1.17035 0.83218 0.98293 0.98064 1.20662 0.91951 1.00751 0.99631 1.17335 0.90546 0.90407 0.97577 1.91521 1.82724 1.62915 1.73452 1.17455 0.77786 0.97389 1.01640 1.91537 1.28144 1.96020 1.94628 1.21426 0.93371 0.99571 1.00651 1.17273 0.90800 0.91774 0.94299 1.43592 1.23546 1.14084 1.50285 1.21316 0.86645 0.81835 0.78633 1.90581 1.18895 1.79465 1.49062 1.21491 0.98585 0.88845 0.94775 0.87997 1.58750 1.08086 1.02862 1.66563 1.22450 1.02205 1.02096 0.91263 1.19097 0.94460 0.93164 0.94450 1.21156 1.29584 1.14464 0.91315 0.92670 1.25001 0.95055 0.94986 0.99160 1.69939 1.30686 1.17882 1.34577 0.86579 0.77606 0.78693 0.85075 1.20551 1.21104 1.19844 0.88165 0.88172 0.89452 0.74854 0.82445 0.80156 0.74916 0.82527 0.83883 0.92421 0.92298 0.96279 0.96251 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.31 36.00 0.37 -0.29 16 2 C 0.51 4.10 7.67 -10.99 -0.08 4.01 16 3 O -0.52 -6.42 14.87 5.54 0.08 -6.33 16 4 N -0.67 -4.83 4.95 -9.71 -0.05 -4.88 16 5 C 0.13 1.35 6.28 -83.44 -0.52 0.82 16 6 C -0.11 -1.23 8.63 -39.36 -0.34 -1.57 16 7 C 0.06 0.79 7.30 -39.37 -0.29 0.50 16 8 F -0.13 -1.68 17.17 2.25 0.04 -1.64 16 9 C 0.08 1.04 7.30 -39.37 -0.29 0.75 16 10 F -0.12 -1.75 17.17 2.25 0.04 -1.71 16 11 C -0.13 -1.69 8.77 -39.37 -0.35 -2.03 16 12 C 0.16 1.80 6.47 -83.45 -0.54 1.26 16 13 N -0.67 -7.02 5.15 -9.72 -0.05 -7.07 16 14 C 0.53 7.09 6.97 -10.99 -0.08 7.01 16 15 O -0.51 -8.15 13.17 5.54 0.07 -8.07 16 16 C 0.08 1.09 3.21 -68.86 -0.22 0.87 16 17 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 18 N -0.83 -12.12 8.94 -5.65 -0.05 -12.17 16 19 C -0.14 -2.39 4.78 -26.73 -0.13 -2.52 16 20 C 0.03 0.56 4.74 -27.88 -0.13 0.43 16 21 C -0.53 -13.61 9.11 -34.44 -0.31 -13.93 16 22 H 0.06 1.41 7.74 -52.48 -0.41 1.00 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 24 N -0.89 -24.78 13.29 55.43 0.74 -24.05 16 25 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.41 1.76 8.13 -40.82 -0.33 1.42 16 33 H 0.16 1.76 6.49 -52.49 -0.34 1.42 16 34 H 0.18 2.62 5.51 -52.48 -0.29 2.33 16 35 H 0.41 3.23 7.94 -40.82 -0.32 2.91 16 36 H 0.36 5.32 7.55 -39.29 -0.30 5.03 16 37 H 0.35 5.20 8.58 -39.29 -0.34 4.86 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -32.32 366.69 -6.46 -38.77 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.78 Total: 9.37 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -3.01 Total: -3.18 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.59 Total: -48.16 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.16 Total: -14.41 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.08 Total: -3.35 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.32 -6.46 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424112122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.741 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds