Wall clock time and date at job start Sat Apr 11 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21303 * 119.99912 * 2 1 4 4 N 1.34781 * 120.00541 * 179.97438 * 2 1 3 5 5 C 1.40155 * 120.00042 * 185.49016 * 4 2 1 6 6 C 1.38718 * 120.06340 * 34.25785 * 5 4 2 7 7 C 1.38356 * 120.00116 * 180.02562 * 6 5 4 8 8 F 1.35093 * 119.93512 * 179.97438 * 7 6 5 9 9 C 1.38691 * 120.12102 * 359.94863 * 7 6 5 10 10 F 1.35105 * 119.93352 * 180.02562 * 9 7 6 11 11 C 1.38351 * 120.13196 * 0.04973 * 9 7 6 12 12 C 1.38710 * 120.00071 * 359.97438 * 11 9 7 13 13 N 1.40152 * 120.06422 * 179.73080 * 12 11 9 14 14 C 1.34773 * 120.00328 * 25.55464 * 13 12 11 15 15 O 1.21297 * 120.00017 * 356.14312 * 14 13 12 16 16 C 1.50699 * 120.00101 * 176.13972 * 14 13 12 17 17 H 1.08998 * 109.47357 * 320.00452 * 16 14 13 18 18 N 1.46905 * 109.47206 * 200.00108 * 16 14 13 19 19 C 1.53007 * 109.47221 * 80.00123 * 16 14 13 20 20 C 1.52995 * 109.47030 * 184.99793 * 19 16 14 21 21 C 1.50705 * 109.47000 * 179.97438 * 20 19 16 22 22 H 1.08008 * 119.99844 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00200 * 180.02562 * 21 20 19 24 24 N 1.31509 * 119.99587 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00074 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47416 * 89.99575 * 25 23 21 27 27 H 1.48497 * 109.47076 * 210.00133 * 25 23 21 28 28 H 1.48504 * 109.47248 * 329.99765 * 25 23 21 29 29 H 1.08999 * 109.47386 * 269.99696 * 1 2 3 30 30 H 1.08994 * 109.47212 * 30.00183 * 1 2 3 31 31 H 1.09005 * 109.46800 * 150.00012 * 1 2 3 32 32 H 0.97000 * 119.99715 * 5.49303 * 4 2 1 33 33 H 1.07999 * 119.99675 * 0.03693 * 6 5 4 34 34 H 1.08005 * 119.99912 * 179.97438 * 11 9 7 35 35 H 0.97008 * 119.99680 * 205.56096 * 13 12 11 36 36 H 1.00899 * 110.99938 * 176.04833 * 18 16 14 37 37 H 1.00898 * 110.99452 * 299.99882 * 18 16 14 38 38 H 1.08997 * 109.46696 * 305.00235 * 19 16 14 39 39 H 1.09000 * 109.46694 * 65.00141 * 19 16 14 40 40 H 1.08997 * 109.47742 * 299.99801 * 20 19 16 41 41 H 1.09000 * 109.47098 * 60.00595 * 20 19 16 42 42 H 0.97009 * 119.99575 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.5777 -1.1698 0.1167 6 6 4.2122 -0.2119 0.8940 7 6 5.5911 -0.2154 1.0073 8 9 6.2076 0.7183 1.7643 9 6 6.3414 -1.1760 0.3456 10 9 7.6877 -1.1762 0.4593 11 6 5.7140 -2.1338 -0.4310 12 6 4.3319 -2.1349 -0.5487 13 7 3.6954 -3.1011 -1.3396 14 6 4.2910 -4.2896 -1.5613 15 8 5.4075 -4.4973 -1.1352 16 6 3.5699 -5.3605 -2.3386 17 1 2.5190 -5.3740 -2.0496 18 7 4.1745 -6.6675 -2.0482 19 6 3.6832 -5.0676 -3.8361 20 6 2.8481 -6.0828 -4.6189 21 6 2.9592 -5.7940 -6.0938 22 1 3.5645 -4.9685 -6.4383 23 6 2.2872 -6.5828 -7.0033 24 7 1.5497 -7.5875 -6.5837 25 14 2.4255 -6.2251 -8.8315 26 1 3.5715 -6.9803 -9.3984 27 1 1.1732 -6.6403 -9.5132 28 1 2.6415 -4.7703 -9.0364 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6994 -2.0053 -0.0795 33 1 3.6297 0.5364 1.4109 34 1 6.3005 -2.8806 -0.9457 35 1 2.8261 -2.9144 -1.7276 36 1 3.6683 -7.4100 -2.5070 37 1 5.1494 -6.6805 -2.3076 38 1 3.3156 -4.0616 -4.0383 39 1 4.7265 -5.1418 -4.1428 40 1 3.2157 -7.0888 -4.4167 41 1 1.8048 -6.0087 -4.3121 42 1 1.0772 -8.1428 -7.2237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424112122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:15 Heat of formation + Delta-G solvation = -159.810004 kcal Electronic energy + Delta-G solvation = -29258.788834 eV Core-core repulsion = 24680.717078 eV Total energy + Delta-G solvation = -4578.071756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.58318 -49.65849 -42.29338 -41.07419 -39.34815 -37.15922 -36.09560 -35.64018 -34.84080 -31.93286 -31.66963 -31.02513 -29.38364 -28.05864 -25.96383 -25.00923 -23.64027 -22.46162 -21.86286 -21.37381 -19.91846 -19.24284 -19.06951 -18.49907 -18.14202 -17.69882 -17.48230 -17.34909 -16.68359 -16.46430 -16.27613 -16.12444 -16.05216 -15.99164 -15.67262 -15.26440 -14.96591 -14.79084 -14.73512 -14.54724 -14.38269 -14.01439 -13.80566 -13.45620 -13.33159 -13.10601 -12.96967 -12.92342 -12.64354 -12.51670 -11.79224 -11.75918 -11.66054 -11.43028 -11.28227 -11.12826 -10.77900 -10.54105 -9.83332 -9.66454 -9.06728 -8.20555 -6.29573 -0.42674 -0.21612 1.30819 1.40052 1.42234 1.44846 1.51187 1.59510 1.83767 2.24266 2.40711 2.70217 3.11056 3.14121 3.30858 3.54021 3.72145 3.72632 3.87902 4.05336 4.10512 4.20180 4.23136 4.50556 4.60436 4.64319 4.65696 4.69948 4.78040 4.84728 5.06741 5.09312 5.11696 5.19322 5.49960 5.62628 5.69240 5.83455 5.99938 6.21048 6.23406 6.24692 6.47712 6.86449 6.89704 6.98442 7.39703 8.89754 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.002722 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.925349 B =10283.534475 C =11526.439711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.511 3.489 3 O -0.568 6.568 4 N -0.660 5.660 5 C 0.147 3.853 6 C -0.108 4.108 7 C 0.059 3.941 8 F -0.133 7.133 9 C 0.064 3.936 10 F -0.135 7.135 11 C -0.135 4.135 12 C 0.155 3.845 13 N -0.651 5.651 14 C 0.531 3.469 15 O -0.534 6.534 16 C 0.087 3.913 17 H 0.126 0.874 18 N -0.830 5.830 19 C -0.126 4.126 20 C 0.030 3.970 21 C -0.544 4.544 22 H 0.053 0.947 23 C 0.009 3.991 24 N -0.924 5.924 25 Si 0.952 3.048 26 H -0.278 1.278 27 H -0.282 1.282 28 H -0.267 1.267 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.432 0.568 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.430 0.570 36 H 0.357 0.643 37 H 0.345 0.655 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.004 0.996 41 H 0.009 0.991 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 12.595 15.821 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.302 3.698 3 O -0.445 6.445 4 N -0.308 5.308 5 C 0.049 3.951 6 C -0.130 4.130 7 C 0.038 3.962 8 F -0.112 7.112 9 C 0.043 3.957 10 F -0.113 7.113 11 C -0.157 4.157 12 C 0.056 3.944 13 N -0.297 5.297 14 C 0.320 3.680 15 O -0.409 6.409 16 C -0.028 4.028 17 H 0.144 0.856 18 N -0.362 5.362 19 C -0.166 4.166 20 C -0.007 4.007 21 C -0.582 4.582 22 H 0.071 0.929 23 C -0.190 4.190 24 N -0.564 5.564 25 Si 0.778 3.222 26 H -0.204 1.204 27 H -0.208 1.208 28 H -0.191 1.191 29 H 0.137 0.863 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.272 0.728 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.269 0.731 36 H 0.172 0.828 37 H 0.158 0.842 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.022 0.978 41 H 0.027 0.973 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.752 13.158 16.829 21.539 hybrid contribution 0.302 -0.235 -2.198 2.231 sum -2.451 12.923 14.632 19.675 Atomic orbital electron populations 1.21975 0.86288 1.07080 1.06990 1.21984 0.92697 0.81964 0.73119 1.90773 1.71704 1.32713 1.49343 1.43659 1.02962 1.11487 1.72731 1.16993 0.84733 0.96874 0.96501 1.20737 0.91403 1.01022 0.99803 1.17437 0.91007 0.90214 0.97564 1.91502 1.82952 1.63100 1.73618 1.17525 0.77492 0.98100 1.02579 1.91504 1.28861 1.96147 1.94805 1.21320 0.94164 0.99353 1.00839 1.17207 0.90331 0.92184 0.94633 1.43329 1.23861 1.12903 1.49656 1.21123 0.86119 0.82322 0.78434 1.90595 1.19996 1.80026 1.50271 1.21421 1.00000 0.88698 0.92683 0.85606 1.58773 1.07963 1.03169 1.66311 1.22202 1.00314 1.01168 0.92873 1.18968 0.94581 0.93783 0.93378 1.21637 1.28964 1.14130 0.93485 0.92863 1.25768 0.94992 0.94983 1.03246 1.70036 1.31694 1.18838 1.35831 0.85646 0.77506 0.78745 0.80348 1.20431 1.20787 1.19103 0.86270 0.88340 0.86738 0.72795 0.82101 0.81586 0.73051 0.82769 0.84202 0.91165 0.93600 0.97806 0.97266 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 10.31 71.23 0.73 0.05 16 2 C 0.51 6.86 7.67 87.66 0.67 7.53 16 3 O -0.57 -13.17 14.87 -3.10 -0.05 -13.22 16 4 N -0.66 -7.56 4.95 -303.03 -1.50 -9.06 16 5 C 0.15 2.75 6.28 38.20 0.24 2.99 16 6 C -0.11 -2.35 8.63 22.41 0.19 -2.16 16 7 C 0.06 1.48 7.30 22.41 0.16 1.65 16 8 F -0.13 -3.51 17.17 44.97 0.77 -2.74 16 9 C 0.06 1.72 7.30 22.41 0.16 1.88 16 10 F -0.13 -3.88 17.17 44.97 0.77 -3.11 16 11 C -0.14 -3.51 8.77 22.41 0.20 -3.32 16 12 C 0.16 3.31 6.47 38.20 0.25 3.56 16 13 N -0.65 -12.13 5.15 -303.05 -1.56 -13.69 16 14 C 0.53 13.40 6.97 87.66 0.61 14.02 16 15 O -0.53 -16.79 13.17 -3.08 -0.04 -16.83 16 16 C 0.09 2.27 3.21 44.17 0.14 2.41 16 17 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 18 N -0.83 -23.50 8.94 -171.79 -1.54 -25.03 16 19 C -0.13 -4.12 4.78 30.60 0.15 -3.97 16 20 C 0.03 1.31 4.74 29.85 0.14 1.45 16 21 C -0.54 -27.83 9.11 25.60 0.23 -27.60 16 22 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 23 C 0.01 0.47 5.46 84.66 0.46 0.93 16 24 N -0.92 -51.30 13.29 21.45 0.28 -51.02 16 25 Si 0.95 41.49 29.54 68.60 2.03 43.52 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 29 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.11 -0.12 8.14 -2.38 -0.02 -0.14 16 32 H 0.43 1.99 8.13 -92.71 -0.75 1.23 16 33 H 0.16 3.45 6.49 -2.91 -0.02 3.43 16 34 H 0.17 4.89 5.51 -2.91 -0.02 4.87 16 35 H 0.43 5.25 7.94 -92.70 -0.74 4.52 16 36 H 0.36 10.39 7.55 -89.69 -0.68 9.72 16 37 H 0.34 10.19 8.58 -89.70 -0.77 9.42 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.00 0.17 6.87 -2.39 -0.02 0.15 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -70.27 366.69 1.72 -68.55 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -1.80 Total: 23.20 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 4.35 Total: -0.57 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -4.31 Total: -98.80 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.09 Total: -30.05 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 1.54 Total: -5.85 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -70.27 1.72 -68.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424112122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.260 kcal (2) G-P(sol) polarization free energy of solvation -70.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds