Wall clock time and date at job start Sat Apr 11 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21300 * 119.99972 * 2 1 4 4 N 1.34775 * 120.00154 * 180.02562 * 2 1 3 5 5 C 1.40163 * 119.99803 * 174.47780 * 4 2 1 6 6 C 1.38711 * 120.06402 * 335.17071 * 5 4 2 7 7 C 1.38356 * 120.00098 * 180.27967 * 6 5 4 8 8 F 1.35100 * 119.93938 * 179.77027 * 7 6 5 9 9 C 1.38692 * 120.12503 * 359.74553 * 7 6 5 10 10 F 1.35093 * 119.94005 * 180.02562 * 9 7 6 11 11 C 1.38363 * 120.12708 * 0.02562 * 9 7 6 12 12 C 1.38708 * 119.99432 * 359.97354 * 11 9 7 13 13 N 1.40170 * 120.05977 * 179.97438 * 12 11 9 14 14 C 1.34782 * 119.99808 * 335.18219 * 13 12 11 15 15 O 1.21294 * 119.99957 * 354.47145 * 14 13 12 16 16 C 1.50700 * 119.99845 * 174.47191 * 14 13 12 17 17 H 1.09004 * 109.47035 * 40.00084 * 16 14 13 18 18 N 1.46896 * 109.46691 * 159.99898 * 16 14 13 19 19 C 1.52992 * 109.46982 * 279.99814 * 16 14 13 20 20 C 1.53006 * 109.46956 * 174.99949 * 19 16 14 21 21 C 1.50698 * 109.46908 * 180.02562 * 20 19 16 22 22 H 1.08001 * 120.00251 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99673 * 180.02562 * 21 20 19 24 24 N 1.31521 * 120.00035 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00292 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47044 * 89.99970 * 25 23 21 27 27 H 1.48499 * 109.47094 * 209.99789 * 25 23 21 28 28 H 1.48495 * 109.46835 * 330.00148 * 25 23 21 29 29 H 1.08994 * 109.47481 * 269.99955 * 1 2 3 30 30 H 1.09004 * 109.46979 * 30.00012 * 1 2 3 31 31 H 1.09001 * 109.46827 * 149.99787 * 1 2 3 32 32 H 0.96995 * 120.00073 * 354.46637 * 4 2 1 33 33 H 1.08000 * 120.00272 * 0.04141 * 6 5 4 34 34 H 1.07997 * 119.99758 * 179.97438 * 11 9 7 35 35 H 0.96995 * 119.99897 * 155.18254 * 13 12 11 36 36 H 1.00900 * 111.00472 * 296.04546 * 18 16 14 37 37 H 1.00897 * 111.00454 * 60.00598 * 18 16 14 38 38 H 1.08999 * 109.47344 * 55.00575 * 19 16 14 39 39 H 1.09000 * 109.47564 * 294.99883 * 19 16 14 40 40 H 1.08999 * 109.47044 * 60.00427 * 20 19 16 41 41 H 1.09000 * 109.47390 * 300.00052 * 20 19 16 42 42 H 0.96993 * 120.00058 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5776 -1.1698 -0.1173 6 6 4.2258 -0.1069 -0.7290 7 6 5.6042 -0.1136 -0.8487 8 9 6.2339 0.9201 -1.4488 9 6 6.3408 -1.1793 -0.3535 10 9 7.6865 -1.1817 -0.4720 11 6 5.6999 -2.2401 0.2618 12 6 4.3183 -2.2387 0.3847 13 7 3.6677 -3.3128 1.0072 14 6 4.2509 -4.5275 1.0381 15 8 5.2901 -4.7166 0.4419 16 6 3.6117 -5.6507 1.8133 17 1 2.5309 -5.6182 1.6756 18 7 4.1287 -6.9370 1.3275 19 6 3.9414 -5.4970 3.2993 20 6 3.1919 -6.5631 4.1010 21 6 3.5161 -6.4112 5.5648 22 1 4.1898 -5.6325 5.8907 23 6 2.9536 -7.2671 6.4879 24 7 3.2370 -7.1349 7.7654 25 14 1.7902 -8.6154 5.9240 26 1 2.5661 -9.8459 5.6255 27 1 0.8047 -8.8999 6.9977 28 1 1.0750 -8.1722 4.7003 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6993 -2.0053 0.0801 33 1 3.6543 0.7241 -1.1151 34 1 6.2755 -3.0690 0.6463 35 1 2.7978 -3.1819 1.4158 36 1 3.8680 -7.0914 0.3651 37 1 5.1294 -6.9919 1.4443 38 1 3.6371 -4.5067 3.6384 39 1 5.0144 -5.6181 3.4479 40 1 3.4961 -7.5533 3.7619 41 1 2.1189 -6.4419 3.9524 42 1 2.8416 -7.7372 8.4147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424112123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:19 Heat of formation + Delta-G solvation = -130.768728 kcal Electronic energy + Delta-G solvation = -29318.594083 eV Core-core repulsion = 24741.781651 eV Total energy + Delta-G solvation = -4576.812432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.59247 -48.66187 -41.52464 -40.35947 -38.51766 -35.68711 -35.32369 -34.86107 -32.89830 -31.35138 -30.66211 -30.16215 -28.69646 -26.89546 -24.57814 -23.89647 -22.50293 -21.25260 -20.86234 -20.21844 -19.11782 -18.36899 -18.01401 -17.47485 -16.89602 -16.74002 -16.53445 -16.45478 -15.96130 -15.74125 -15.45499 -15.09067 -14.99956 -14.71152 -14.47971 -14.24395 -14.03986 -13.84485 -13.67291 -13.54727 -13.19572 -13.09890 -12.73942 -12.58104 -12.54129 -12.10639 -11.88415 -11.18584 -11.00795 -10.99047 -10.70130 -10.49013 -10.34986 -10.14397 -9.84534 -9.74366 -9.22574 -8.95995 -8.72391 -8.54599 -8.18809 -6.07408 -4.06160 0.45356 0.67872 1.97728 2.21665 2.30390 2.60404 3.11952 3.30159 3.37406 3.40287 3.61973 3.96118 4.11892 4.29359 4.41504 4.42912 4.62156 4.64049 4.77690 4.83067 4.86295 5.00404 5.09883 5.27298 5.27736 5.40095 5.46152 5.55527 5.64601 5.86258 5.96391 6.10056 6.27979 6.50818 6.68097 6.70310 6.84710 7.10416 7.24050 7.41559 7.44789 7.47060 7.72058 7.76049 8.48423 8.96793 9.54713 11.05959 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.002805 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.729050 B = 9979.264784 C =11237.300747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.519 6.519 4 N -0.669 5.669 5 C 0.135 3.865 6 C -0.120 4.120 7 C 0.067 3.933 8 F -0.126 7.126 9 C 0.075 3.925 10 F -0.125 7.125 11 C -0.121 4.121 12 C 0.148 3.852 13 N -0.668 5.668 14 C 0.484 3.516 15 O -0.521 6.521 16 C 0.079 3.921 17 H 0.103 0.897 18 N -0.808 5.808 19 C -0.090 4.090 20 C -0.003 4.003 21 C -0.525 4.525 22 H 0.069 0.931 23 C 0.066 3.934 24 N -0.904 5.904 25 Si 0.883 3.117 26 H -0.277 1.277 27 H -0.291 1.291 28 H -0.265 1.265 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.413 0.587 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.414 0.586 36 H 0.338 0.662 37 H 0.353 0.647 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.030 0.970 41 H 0.013 0.987 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.618 12.142 -20.241 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.302 3.698 3 O -0.394 6.394 4 N -0.315 5.315 5 C 0.037 3.963 6 C -0.141 4.141 7 C 0.046 3.954 8 F -0.105 7.105 9 C 0.054 3.946 10 F -0.103 7.103 11 C -0.143 4.143 12 C 0.050 3.950 13 N -0.313 5.313 14 C 0.272 3.728 15 O -0.396 6.396 16 C -0.037 4.037 17 H 0.121 0.879 18 N -0.337 5.337 19 C -0.128 4.128 20 C -0.040 4.040 21 C -0.563 4.563 22 H 0.087 0.913 23 C -0.135 4.135 24 N -0.543 5.543 25 Si 0.711 3.289 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.189 1.189 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.250 0.750 33 H 0.187 0.813 34 H 0.190 0.810 35 H 0.250 0.750 36 H 0.150 0.850 37 H 0.167 0.833 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.031 0.969 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.961 12.302 -19.905 23.920 hybrid contribution -0.333 -0.271 -0.657 0.785 sum -5.295 12.032 -20.562 24.405 Atomic orbital electron populations 1.21925 0.89876 1.05652 1.05727 1.21146 0.91168 0.82736 0.74754 1.90732 1.70276 1.31214 1.47162 1.43586 1.04505 1.10518 1.72858 1.17106 0.83110 0.96021 1.00076 1.20976 0.91904 1.00602 1.00653 1.17370 0.90528 0.86243 1.01301 1.91528 1.82078 1.55825 1.81061 1.17424 0.77870 0.95487 1.03830 1.91537 1.28150 1.96492 1.94134 1.21104 0.93004 0.99107 1.01042 1.17230 0.90803 0.89187 0.97830 1.43790 1.23199 1.08073 1.56258 1.23177 0.85626 0.83898 0.80119 1.90657 1.23170 1.82406 1.43332 1.21953 0.99995 0.84714 0.97024 0.87910 1.59003 1.20055 1.28796 1.25807 1.21535 1.01979 1.01338 0.87962 1.19476 0.94825 0.94661 0.95058 1.21149 1.28628 1.16818 0.89687 0.91274 1.25026 0.96332 0.97382 0.94744 1.69921 1.44590 1.38642 1.01149 0.86727 0.81144 0.82636 0.78403 1.20250 1.21679 1.18946 0.87913 0.88108 0.89556 0.74987 0.81264 0.80973 0.74967 0.85005 0.83258 0.91978 0.91890 0.95142 0.96853 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.31 36.00 0.37 -0.17 16 2 C 0.51 3.76 7.75 -10.99 -0.09 3.67 16 3 O -0.52 -5.99 14.27 5.54 0.08 -5.91 16 4 N -0.67 -4.36 5.13 -9.72 -0.05 -4.41 16 5 C 0.13 1.31 6.45 -83.44 -0.54 0.77 16 6 C -0.12 -1.34 8.69 -39.36 -0.34 -1.68 16 7 C 0.07 0.83 7.30 -39.37 -0.29 0.54 16 8 F -0.13 -1.65 17.17 2.25 0.04 -1.61 16 9 C 0.08 0.98 7.30 -39.37 -0.29 0.69 16 10 F -0.12 -1.73 17.17 2.25 0.04 -1.69 16 11 C -0.12 -1.53 8.69 -39.36 -0.34 -1.87 16 12 C 0.15 1.59 6.45 -83.44 -0.54 1.05 16 13 N -0.67 -6.24 5.13 -9.71 -0.05 -6.29 16 14 C 0.48 5.75 6.87 -10.98 -0.08 5.67 16 15 O -0.52 -7.49 13.42 5.55 0.07 -7.41 16 16 C 0.08 1.00 3.15 -68.87 -0.22 0.78 16 17 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 18 N -0.81 -10.44 8.44 -5.66 -0.05 -10.48 16 19 C -0.09 -1.51 4.78 -26.73 -0.13 -1.64 16 20 C 0.00 -0.06 3.93 -27.88 -0.11 -0.17 16 21 C -0.52 -14.21 9.66 -34.44 -0.33 -14.54 16 22 H 0.07 2.03 7.99 -52.49 -0.42 1.61 16 23 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 24 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 25 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 32 H 0.41 1.40 7.73 -40.82 -0.32 1.08 16 33 H 0.17 1.92 5.78 -52.49 -0.30 1.62 16 34 H 0.17 2.40 5.79 -52.49 -0.30 2.10 16 35 H 0.41 2.68 7.74 -40.82 -0.32 2.36 16 36 H 0.34 3.60 9.06 -39.29 -0.36 3.24 16 37 H 0.35 4.74 8.58 -39.29 -0.34 4.40 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.03 0.68 7.18 -51.93 -0.37 0.30 16 41 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -34.65 363.94 -6.14 -40.79 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.80 Total: 6.84 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -3.01 Total: -5.12 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.63 Total: -47.68 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.15 Total: -13.33 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.08 Total: -3.30 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.65 -6.14 -40.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424112123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.980 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds