Wall clock time and date at job start Sat Apr 11 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21300 * 119.99972 * 2 1 4 4 N 1.34775 * 120.00154 * 180.02562 * 2 1 3 5 5 C 1.40163 * 119.99803 * 174.47780 * 4 2 1 6 6 C 1.38711 * 120.06402 * 335.17071 * 5 4 2 7 7 C 1.38356 * 120.00098 * 180.27967 * 6 5 4 8 8 F 1.35100 * 119.93938 * 179.77027 * 7 6 5 9 9 C 1.38692 * 120.12503 * 359.74553 * 7 6 5 10 10 F 1.35093 * 119.94005 * 180.02562 * 9 7 6 11 11 C 1.38363 * 120.12708 * 0.02562 * 9 7 6 12 12 C 1.38708 * 119.99432 * 359.97354 * 11 9 7 13 13 N 1.40170 * 120.05977 * 179.97438 * 12 11 9 14 14 C 1.34782 * 119.99808 * 335.18219 * 13 12 11 15 15 O 1.21294 * 119.99957 * 354.47145 * 14 13 12 16 16 C 1.50700 * 119.99845 * 174.47191 * 14 13 12 17 17 H 1.09004 * 109.47035 * 40.00084 * 16 14 13 18 18 N 1.46896 * 109.46691 * 159.99898 * 16 14 13 19 19 C 1.52992 * 109.46982 * 279.99814 * 16 14 13 20 20 C 1.53006 * 109.46956 * 174.99949 * 19 16 14 21 21 C 1.50698 * 109.46908 * 180.02562 * 20 19 16 22 22 H 1.08001 * 120.00251 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99673 * 180.02562 * 21 20 19 24 24 N 1.31521 * 120.00035 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00292 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47044 * 89.99970 * 25 23 21 27 27 H 1.48499 * 109.47094 * 209.99789 * 25 23 21 28 28 H 1.48495 * 109.46835 * 330.00148 * 25 23 21 29 29 H 1.08994 * 109.47481 * 269.99955 * 1 2 3 30 30 H 1.09004 * 109.46979 * 30.00012 * 1 2 3 31 31 H 1.09001 * 109.46827 * 149.99787 * 1 2 3 32 32 H 0.96995 * 120.00073 * 354.46637 * 4 2 1 33 33 H 1.08000 * 120.00272 * 0.04141 * 6 5 4 34 34 H 1.07997 * 119.99758 * 179.97438 * 11 9 7 35 35 H 0.96995 * 119.99897 * 155.18254 * 13 12 11 36 36 H 1.00900 * 111.00472 * 296.04546 * 18 16 14 37 37 H 1.00897 * 111.00454 * 60.00598 * 18 16 14 38 38 H 1.08999 * 109.47344 * 55.00575 * 19 16 14 39 39 H 1.09000 * 109.47564 * 294.99883 * 19 16 14 40 40 H 1.08999 * 109.47044 * 60.00427 * 20 19 16 41 41 H 1.09000 * 109.47390 * 300.00052 * 20 19 16 42 42 H 0.96993 * 120.00058 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5776 -1.1698 -0.1173 6 6 4.2258 -0.1069 -0.7290 7 6 5.6042 -0.1136 -0.8487 8 9 6.2339 0.9201 -1.4488 9 6 6.3408 -1.1793 -0.3535 10 9 7.6865 -1.1817 -0.4720 11 6 5.6999 -2.2401 0.2618 12 6 4.3183 -2.2387 0.3847 13 7 3.6677 -3.3128 1.0072 14 6 4.2509 -4.5275 1.0381 15 8 5.2901 -4.7166 0.4419 16 6 3.6117 -5.6507 1.8133 17 1 2.5309 -5.6182 1.6756 18 7 4.1287 -6.9370 1.3275 19 6 3.9414 -5.4970 3.2993 20 6 3.1919 -6.5631 4.1010 21 6 3.5161 -6.4112 5.5648 22 1 4.1898 -5.6325 5.8907 23 6 2.9536 -7.2671 6.4879 24 7 3.2370 -7.1349 7.7654 25 14 1.7902 -8.6154 5.9240 26 1 2.5661 -9.8459 5.6255 27 1 0.8047 -8.8999 6.9977 28 1 1.0750 -8.1722 4.7003 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6993 -2.0053 0.0801 33 1 3.6543 0.7241 -1.1151 34 1 6.2755 -3.0690 0.6463 35 1 2.7978 -3.1819 1.4158 36 1 3.8680 -7.0914 0.3651 37 1 5.1294 -6.9919 1.4443 38 1 3.6371 -4.5067 3.6384 39 1 5.0144 -5.6181 3.4479 40 1 3.4961 -7.5533 3.7619 41 1 2.1189 -6.4419 3.9524 42 1 2.8416 -7.7372 8.4147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424112123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:18 Heat of formation + Delta-G solvation = -157.522440 kcal Electronic energy + Delta-G solvation = -29319.754211 eV Core-core repulsion = 24741.781651 eV Total energy + Delta-G solvation = -4577.972560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.60954 -49.68550 -42.36252 -41.17543 -39.39208 -36.93911 -36.16865 -35.68796 -34.78339 -32.28783 -31.98682 -31.00316 -29.40133 -28.29323 -25.79911 -24.94241 -23.54076 -22.22006 -21.92129 -21.41945 -19.99228 -19.26089 -19.05613 -18.71837 -18.20676 -17.75690 -17.47542 -17.35874 -16.90299 -16.68888 -16.34101 -16.17535 -16.11980 -15.94627 -15.63065 -15.22476 -15.08759 -14.91661 -14.71155 -14.61385 -14.40158 -13.98041 -13.92326 -13.51919 -13.35215 -13.11955 -12.98254 -12.80487 -12.48024 -11.96199 -11.82909 -11.77405 -11.57860 -11.49791 -11.25828 -11.14213 -11.03639 -10.68635 -9.87164 -9.70712 -9.04688 -8.22086 -6.25837 -0.45667 -0.25142 1.22474 1.40128 1.45117 1.46601 1.58395 1.61279 1.81360 2.23503 2.44148 2.67976 3.07725 3.15195 3.26445 3.45412 3.65098 3.71438 3.86090 4.02852 4.05422 4.15370 4.25716 4.47211 4.57782 4.65457 4.68347 4.70560 4.73701 4.85454 5.03203 5.06187 5.16495 5.17116 5.54490 5.59514 5.68966 5.76670 5.98033 6.17723 6.21349 6.34962 6.51901 6.82251 6.84304 6.93816 7.39064 8.94906 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.002805 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.729050 B = 9979.264784 C =11237.300747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.510 3.490 3 O -0.565 6.565 4 N -0.655 5.655 5 C 0.151 3.849 6 C -0.121 4.121 7 C 0.061 3.939 8 F -0.133 7.133 9 C 0.059 3.941 10 F -0.136 7.136 11 C -0.129 4.129 12 C 0.149 3.851 13 N -0.650 5.650 14 C 0.491 3.509 15 O -0.546 6.546 16 C 0.091 3.909 17 H 0.138 0.862 18 N -0.818 5.818 19 C -0.084 4.084 20 C 0.003 3.997 21 C -0.532 4.532 22 H 0.026 0.974 23 C -0.001 4.001 24 N -0.958 5.958 25 Si 0.955 3.045 26 H -0.275 1.275 27 H -0.291 1.291 28 H -0.232 1.232 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.432 0.568 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.430 0.570 36 H 0.353 0.647 37 H 0.347 0.653 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.028 0.972 41 H 0.031 0.969 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 11.371 -22.118 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.302 3.698 3 O -0.443 6.443 4 N -0.302 5.302 5 C 0.052 3.948 6 C -0.143 4.143 7 C 0.040 3.960 8 F -0.112 7.112 9 C 0.038 3.962 10 F -0.115 7.115 11 C -0.150 4.150 12 C 0.050 3.950 13 N -0.297 5.297 14 C 0.278 3.722 15 O -0.422 6.422 16 C -0.024 4.024 17 H 0.155 0.845 18 N -0.347 5.347 19 C -0.122 4.122 20 C -0.035 4.035 21 C -0.570 4.570 22 H 0.044 0.956 23 C -0.197 4.197 24 N -0.599 5.599 25 Si 0.779 3.221 26 H -0.201 1.201 27 H -0.218 1.218 28 H -0.155 1.155 29 H 0.135 0.865 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.272 0.728 33 H 0.187 0.813 34 H 0.176 0.824 35 H 0.271 0.729 36 H 0.167 0.833 37 H 0.161 0.839 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.367 11.527 -21.807 26.047 hybrid contribution 0.743 0.050 -0.028 0.745 sum -7.625 11.577 -21.835 25.864 Atomic orbital electron populations 1.21987 0.86054 1.07220 1.07046 1.22025 0.92806 0.81889 0.73106 1.90724 1.71459 1.32888 1.49206 1.43627 1.02959 1.11621 1.72039 1.17053 0.84717 0.94707 0.98279 1.21034 0.91316 1.01062 1.00874 1.17486 0.91027 0.85991 1.01542 1.91503 1.82345 1.56112 1.81251 1.17521 0.77525 0.96164 1.05039 1.91499 1.28979 1.96610 1.94366 1.21021 0.93934 0.98635 1.01449 1.17145 0.90216 0.89706 0.97902 1.43572 1.23607 1.06902 1.55610 1.22978 0.85082 0.84297 0.79852 1.90671 1.24206 1.82836 1.44513 1.21761 1.01890 0.84891 0.93904 0.84463 1.59005 1.19787 1.28831 1.27075 1.21317 0.99980 1.00228 0.90686 1.19374 0.96263 0.96034 0.91812 1.21603 1.27124 1.15206 0.93029 0.95609 1.26067 0.98574 1.00399 0.94630 1.70098 1.46682 1.40332 1.02832 0.85584 0.78708 0.78836 0.78975 1.20084 1.21780 1.15524 0.86489 0.88063 0.86508 0.72770 0.81267 0.82424 0.72937 0.83333 0.83878 0.91230 0.94141 0.95345 0.95072 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.40 10.31 71.24 0.73 0.33 16 2 C 0.51 6.10 7.75 87.66 0.68 6.78 16 3 O -0.56 -12.32 14.27 -3.09 -0.04 -12.36 16 4 N -0.66 -6.46 5.13 -303.04 -1.56 -8.01 16 5 C 0.15 2.66 6.45 38.20 0.25 2.91 16 6 C -0.12 -2.62 8.69 22.41 0.19 -2.43 16 7 C 0.06 1.53 7.30 22.41 0.16 1.69 16 8 F -0.13 -3.56 17.17 44.97 0.77 -2.79 16 9 C 0.06 1.56 7.30 22.41 0.16 1.73 16 10 F -0.14 -3.94 17.17 44.97 0.77 -3.16 16 11 C -0.13 -3.24 8.69 22.41 0.19 -3.05 16 12 C 0.15 2.96 6.45 38.20 0.25 3.20 16 13 N -0.65 -10.30 5.13 -303.03 -1.55 -11.85 16 14 C 0.49 10.47 6.87 87.66 0.60 11.07 16 15 O -0.55 -15.04 13.42 -3.07 -0.04 -15.08 16 16 C 0.09 2.00 3.15 44.17 0.14 2.14 16 17 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 18 N -0.82 -18.92 8.44 -171.81 -1.45 -20.37 16 19 C -0.08 -2.67 4.78 30.59 0.15 -2.52 16 20 C 0.00 0.11 3.93 29.85 0.12 0.22 16 21 C -0.53 -28.98 9.66 25.60 0.25 -28.74 16 22 H 0.03 1.57 7.99 -2.91 -0.02 1.55 16 23 C 0.00 -0.05 5.47 84.65 0.46 0.42 16 24 N -0.96 -59.18 13.96 21.45 0.30 -58.88 16 25 Si 0.96 42.22 27.47 68.60 1.88 44.10 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 28 H -0.23 -8.99 6.54 99.48 0.65 -8.34 16 29 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.43 0.99 7.73 -92.71 -0.72 0.27 16 33 H 0.17 3.76 5.78 -2.91 -0.02 3.74 16 34 H 0.16 4.49 5.79 -2.91 -0.02 4.48 16 35 H 0.43 3.79 7.74 -92.71 -0.72 3.07 16 36 H 0.35 6.40 9.06 -89.69 -0.81 5.59 16 37 H 0.35 8.84 8.58 -89.70 -0.77 8.07 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.03 1.19 7.18 -2.39 -0.02 1.17 16 41 H 0.03 1.18 7.20 -2.39 -0.02 1.16 16 42 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -78.83 363.94 1.49 -77.34 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -1.93 Total: 17.30 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 4.34 Total: -6.23 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -4.26 Total: -99.11 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.09 Total: -27.44 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 1.54 Total: -5.95 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.10 kcal Total: -78.83 1.49 -77.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424112123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.181 kcal (2) G-P(sol) polarization free energy of solvation -78.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds