Wall clock time and date at job start Sat Apr 11 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86805 * 119.99903 * 2 1 4 4 H 1.48492 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46848 * 299.99868 * 3 2 1 6 6 H 1.48498 * 109.47065 * 59.99622 * 3 2 1 7 7 C 1.40229 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99821 * 197.87696 * 7 2 1 9 9 C 1.41110 * 119.99573 * 17.88545 * 7 2 1 10 10 C 1.40884 * 120.09999 * 204.62377 * 9 7 2 11 11 C 1.36320 * 119.89347 * 180.02562 * 10 9 7 12 12 C 1.40007 * 120.10175 * 0.02562 * 11 10 9 13 13 C 1.47643 * 119.89040 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00195 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99903 * 179.97438 * 13 12 11 16 16 C 1.46507 * 119.99861 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.47165 * 35.00323 * 16 15 13 18 18 C 1.52999 * 109.47053 * 275.00172 * 16 15 13 19 19 O 1.42898 * 109.47200 * 294.99947 * 18 16 15 20 20 C 1.53002 * 109.46846 * 155.00171 * 16 15 13 21 21 C 1.50698 * 109.47164 * 294.99946 * 20 16 15 22 22 C 1.38260 * 119.94416 * 270.25678 * 21 20 16 23 23 C 1.38146 * 120.05617 * 180.25685 * 22 21 20 24 24 C 1.38735 * 119.94214 * 359.46823 * 23 22 21 25 25 O 1.35904 * 120.05812 * 180.30063 * 24 23 22 26 26 C 1.38735 * 119.88729 * 0.27252 * 24 23 22 27 27 C 1.38142 * 119.94413 * 0.02562 * 26 24 23 28 28 C 1.40006 * 120.21408 * 0.23404 * 12 11 10 29 29 C 1.36320 * 120.10779 * 359.48000 * 28 12 11 30 30 H 0.96997 * 119.99879 * 0.02562 * 1 2 3 31 31 H 1.08007 * 120.05674 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.94380 * 180.02562 * 11 10 9 33 33 H 0.96997 * 120.00265 * 0.02562 * 15 13 12 34 34 H 1.08994 * 109.46958 * 55.00166 * 18 16 15 35 35 H 1.08994 * 109.47021 * 175.00429 * 18 16 15 36 36 H 0.96701 * 114.00502 * 179.97438 * 19 18 16 37 37 H 1.08996 * 109.46978 * 174.99815 * 20 16 15 38 38 H 1.09006 * 109.46954 * 54.99855 * 20 16 15 39 39 H 1.08002 * 119.97382 * 0.02562 * 22 21 20 40 40 H 1.08002 * 120.03185 * 179.73901 * 23 22 21 41 41 H 0.96702 * 113.99888 * 89.99751 * 25 24 23 42 42 H 1.07998 * 120.02552 * 180.02562 * 26 24 23 43 43 H 1.08000 * 119.97115 * 179.97438 * 27 26 24 44 44 H 1.08000 * 119.94992 * 179.72432 * 28 12 11 45 45 H 1.07993 * 120.05766 * 180.25178 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.7004 1.3465 0.0006 5 1 1.8817 2.3964 -1.2126 6 1 1.8816 2.3965 1.2124 7 6 2.0077 -1.2144 0.0005 8 1 3.0485 -1.2368 0.2877 9 6 1.3532 -2.4070 -0.3742 10 6 1.8268 -3.6494 0.0918 11 6 1.1917 -4.7990 -0.2733 12 6 0.0707 -4.7464 -1.1105 13 6 -0.6133 -5.9944 -1.5035 14 8 -0.2032 -7.0655 -1.0998 15 7 -1.6929 -5.9463 -2.3089 16 6 -2.3713 -7.1848 -2.6994 17 1 -2.3363 -7.8943 -1.8727 18 6 -1.6707 -7.7874 -3.9188 19 8 -1.8175 -6.9078 -5.0354 20 6 -3.8294 -6.8794 -3.0480 21 6 -4.5513 -6.4012 -1.8146 22 6 -5.1768 -7.3125 -0.9841 23 6 -5.8437 -6.8762 0.1443 24 6 -5.8760 -5.5233 0.4497 25 8 -6.5262 -5.0920 1.5625 26 6 -5.2430 -4.6113 -0.3824 27 6 -4.5827 -5.0522 -1.5128 28 6 -0.4004 -3.5146 -1.5806 29 6 0.2246 -2.3592 -1.2162 30 1 -0.4850 0.8400 -0.0004 31 1 2.6917 -3.6909 0.7374 32 1 1.5538 -5.7517 0.0838 33 1 -2.0203 -5.0918 -2.6307 34 1 -0.6117 -7.9225 -3.6994 35 1 -2.1189 -8.7524 -4.1552 36 1 -1.3964 -7.2268 -5.8454 37 1 -4.3102 -7.7829 -3.4230 38 1 -3.8653 -6.1042 -3.8135 39 1 -5.1472 -8.3661 -1.2197 40 1 -6.3358 -7.5880 0.7905 41 1 -5.9707 -5.0553 2.3532 42 1 -5.2664 -3.5577 -0.1465 43 1 -4.0901 -4.3426 -2.1611 44 1 -1.2628 -3.4794 -2.2298 45 1 -0.1419 -1.4093 -1.5760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427939858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:22 Heat of formation + Delta-G solvation = -98.373319 kcal Electronic energy + Delta-G solvation = -28996.171402 eV Core-core repulsion = 24942.700519 eV Total energy + Delta-G solvation = -4053.470883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.00168 -39.17154 -37.68075 -36.88866 -36.58469 -34.44014 -33.86672 -31.82070 -30.98134 -30.20370 -29.44315 -28.81079 -25.84114 -25.71247 -22.86917 -22.54808 -21.60768 -21.05183 -20.42422 -19.59824 -18.41917 -17.53116 -17.49926 -16.82385 -16.11187 -15.84627 -15.50219 -15.38962 -15.12397 -14.76702 -14.24377 -14.00381 -13.74762 -13.55863 -13.48836 -13.42859 -13.21061 -12.77349 -12.67077 -12.26002 -12.15363 -12.02258 -11.90135 -11.63467 -11.36510 -11.28412 -11.20886 -11.08026 -10.92818 -10.64934 -10.46377 -10.06178 -10.01518 -9.56462 -9.35085 -8.98733 -8.94327 -8.60558 -8.40568 -7.71573 -7.53865 -7.03808 -4.60176 1.21248 1.36849 2.23827 2.90232 2.94928 3.00351 3.03933 3.58389 3.73830 3.77166 3.86517 4.23542 4.31371 4.56711 4.69779 4.80746 4.95017 5.02655 5.26231 5.30976 5.36953 5.37940 5.57175 5.58310 5.66023 5.76473 5.88358 5.97065 5.99877 6.06025 6.22445 6.29964 6.31834 6.43337 6.59612 6.76927 6.81045 6.82680 6.96718 7.08061 7.13904 7.43875 7.59116 7.61804 7.66390 7.80244 7.86427 8.07353 8.27837 8.40292 8.63383 8.75595 9.09848 9.88213 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009731 B = 0.003316 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.591460 B = 8440.927576 C =10151.232939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.443 4.443 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.023 4.023 12 C -0.282 4.282 13 C 0.574 3.426 14 O -0.580 6.580 15 N -0.725 5.725 16 C 0.158 3.842 17 H 0.096 0.904 18 C 0.063 3.937 19 O -0.567 6.567 20 C -0.083 4.083 21 C -0.087 4.087 22 C -0.103 4.103 23 C -0.145 4.145 24 C 0.097 3.903 25 O -0.503 6.503 26 C -0.137 4.137 27 C -0.089 4.089 28 C -0.060 4.060 29 C -0.178 4.178 30 H 0.286 0.714 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.398 0.602 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.375 0.625 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.390 0.610 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.087 0.913 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 -8.563 -5.265 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.259 4.259 11 C -0.042 4.042 12 C -0.287 4.287 13 C 0.369 3.631 14 O -0.463 6.463 15 N -0.378 5.378 16 C 0.052 3.948 17 H 0.114 0.886 18 C -0.016 4.016 19 O -0.372 6.372 20 C -0.120 4.120 21 C -0.087 4.087 22 C -0.121 4.121 23 C -0.164 4.164 24 C 0.053 3.947 25 O -0.314 6.314 26 C -0.155 4.155 27 C -0.107 4.107 28 C -0.080 4.080 29 C -0.197 4.197 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.233 0.767 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.221 0.779 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.246 0.754 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.105 0.895 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.331 -8.768 -4.892 14.407 hybrid contribution 0.820 0.837 -0.081 1.175 sum -9.511 -7.932 -4.973 13.345 Atomic orbital electron populations 1.69751 1.07906 1.29917 1.31931 1.26089 0.94793 1.01847 0.91885 0.86191 0.81139 0.80276 0.78869 1.18068 1.19371 1.19676 1.19874 0.98435 0.91202 1.37592 0.89725 1.17782 0.90371 0.92147 0.87154 1.20711 1.04606 0.92678 1.07877 1.20353 0.92986 0.97078 0.93786 1.18890 1.04422 0.91111 1.14249 1.18583 0.78701 0.89581 0.76283 1.90616 1.66527 1.31723 1.57430 1.45837 1.31447 1.08535 1.51948 1.20865 0.90170 0.88644 0.95128 0.88574 1.22692 1.00257 0.91803 0.86816 1.86471 1.80007 1.49392 1.21351 1.20798 0.93372 1.02816 0.95037 1.19861 0.98284 0.93513 0.97051 1.20874 0.97516 0.99345 0.94345 1.21343 1.01118 0.94939 0.98952 1.18472 0.95361 0.91430 0.89448 1.84784 1.39475 1.88343 1.18754 1.21455 0.97829 1.00263 0.95988 1.20934 0.97826 0.95201 0.96786 1.20454 0.97315 0.92589 0.97598 1.20966 0.99937 0.96890 1.01933 0.90313 0.88471 0.88220 0.76668 0.92763 0.93378 0.77862 0.89886 0.89494 0.85810 0.85723 0.75376 0.85298 0.85704 0.89476 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.39 10.95 55.56 0.61 -17.78 16 2 C 0.08 1.74 5.14 -17.31 -0.09 1.65 16 3 Si 0.91 17.22 29.60 -169.99 -5.03 12.19 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 8 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 9 C 0.13 3.27 5.57 -106.80 -0.60 2.67 16 10 C -0.24 -5.79 9.73 -39.27 -0.38 -6.17 16 11 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 12 C -0.28 -6.42 5.89 -104.73 -0.62 -7.03 16 13 C 0.57 11.99 7.73 -12.42 -0.10 11.90 16 14 O -0.58 -13.42 15.98 5.29 0.08 -13.34 16 15 N -0.73 -11.98 4.42 -54.81 -0.24 -12.22 16 16 C 0.16 2.14 2.36 -67.93 -0.16 1.98 16 17 H 0.10 1.43 7.58 -51.93 -0.39 1.04 16 18 C 0.06 0.76 6.85 37.16 0.25 1.02 16 19 O -0.57 -6.47 12.83 -35.23 -0.45 -6.93 16 20 C -0.08 -0.92 4.60 -27.88 -0.13 -1.04 16 21 C -0.09 -1.08 4.95 -104.60 -0.52 -1.59 16 22 C -0.10 -1.20 9.69 -39.61 -0.38 -1.58 16 23 C -0.15 -1.75 9.99 -39.43 -0.39 -2.14 16 24 C 0.10 1.27 6.71 -39.21 -0.26 1.01 16 25 O -0.50 -6.03 13.50 -19.44 -0.26 -6.29 16 26 C -0.14 -1.85 9.99 -39.43 -0.39 -2.25 16 27 C -0.09 -1.18 9.09 -39.61 -0.36 -1.54 16 28 C -0.06 -1.33 9.47 -39.61 -0.38 -1.71 16 29 C -0.18 -4.34 8.64 -39.27 -0.34 -4.68 16 30 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 31 H 0.10 2.20 8.06 -52.48 -0.42 1.77 16 32 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 33 H 0.40 6.24 5.83 -40.82 -0.24 6.00 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 2.70 9.12 45.56 0.42 3.12 16 37 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 38 H 0.09 0.98 7.67 -51.93 -0.40 0.58 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.39 3.06 9.06 45.56 0.41 3.47 16 42 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.13 1.55 7.57 -52.49 -0.40 1.15 16 44 H 0.09 1.66 6.37 -52.49 -0.33 1.33 16 45 H 0.12 2.96 6.16 -52.49 -0.32 2.63 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -30.95 383.35 -9.24 -40.19 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -4.16 Total: 20.18 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -5.56 Total: -21.78 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.37 Total: -30.00 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.63 Total: -26.55 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.95 -9.24 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427939858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.182 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds