Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34114 * 125.15213 * 2 1 4 4 C 1.38043 * 107.88090 * 179.70553 * 3 2 1 5 5 C 1.47220 * 126.82105 * 180.23763 * 4 3 2 6 6 O 1.21631 * 120.00126 * 180.18677 * 5 4 3 7 7 N 1.34778 * 119.99494 * 0.18166 * 5 4 3 8 8 C 1.40108 * 119.99719 * 180.02562 * 7 5 4 9 9 C 1.40425 * 125.97645 * 359.71397 * 8 7 5 10 10 C 1.35229 * 107.86886 * 179.86360 * 9 8 7 11 11 N 1.34968 * 107.86461 * 0.39639 * 10 9 8 12 12 C 1.46498 * 125.97508 * 179.71151 * 11 10 9 13 13 C 1.50699 * 109.46978 * 125.02034 * 12 11 10 14 14 H 1.08001 * 119.99977 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00064 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99793 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00135 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47024 * 89.99841 * 17 15 13 19 19 H 1.48499 * 109.47187 * 210.00298 * 17 15 13 20 20 H 1.48502 * 109.47023 * 330.00271 * 17 15 13 21 21 N 1.31226 * 125.97533 * 180.02562 * 8 7 5 22 22 C 1.46603 * 106.36471 * 0.38974 * 4 3 2 23 23 C 1.48317 * 126.51341 * 179.86776 * 22 4 3 24 24 C 1.46736 * 127.11603 * 144.71425 * 23 22 4 25 25 C 1.34363 * 106.02678 * 179.97438 * 24 23 22 26 26 O 1.34166 * 108.99725 * 359.97438 * 25 24 23 27 27 C 1.34078 * 110.75481 * 0.02562 * 26 25 24 28 28 N 1.31373 * 106.97144 * 359.60803 * 22 4 3 29 29 H 1.09000 * 109.47438 * 270.02066 * 1 2 3 30 30 H 1.09007 * 109.47144 * 30.01651 * 1 2 3 31 31 H 1.09001 * 109.47074 * 150.01962 * 1 2 3 32 32 H 1.08000 * 126.06686 * 359.96039 * 3 2 1 33 33 H 0.96991 * 120.00462 * 0.02562 * 7 5 4 34 34 H 1.08006 * 126.06207 * 359.97438 * 9 8 7 35 35 H 1.08007 * 126.07134 * 180.14406 * 10 9 8 36 36 H 1.09000 * 109.47075 * 245.01602 * 12 11 10 37 37 H 1.08999 * 109.47520 * 5.02036 * 12 11 10 38 38 H 0.96999 * 119.99779 * 179.97438 * 16 15 13 39 39 H 1.08002 * 126.98806 * 359.71588 * 24 23 22 40 40 H 1.07999 * 125.50156 * 179.97438 * 25 24 23 41 41 H 1.08001 * 125.77303 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2372 1.0966 0.0000 4 6 3.5553 0.6867 0.0068 5 6 4.7477 1.5501 0.0141 6 8 5.8581 1.0537 0.0162 7 7 4.6088 2.8907 0.0184 8 6 5.7436 3.7125 0.0248 9 6 7.0783 3.2759 0.0331 10 6 7.8728 4.3702 0.0343 11 7 7.0765 5.4600 0.0359 12 6 7.5261 6.8543 0.0436 13 6 6.9086 7.5875 -1.1192 14 1 6.2478 7.0668 -1.7965 15 6 7.1874 8.9231 -1.3186 16 7 7.9925 9.5569 -0.4942 17 14 6.4226 9.8318 -2.7603 18 1 5.1250 10.4205 -2.3423 19 1 7.3371 10.9142 -3.2046 20 1 6.1977 8.8830 -3.8804 21 7 5.7451 5.0248 0.0299 22 6 3.5322 -0.7791 0.0014 23 6 4.7101 -1.6804 0.0028 24 6 4.8304 -2.9794 0.6746 25 6 6.0667 -3.4270 0.3980 26 8 6.6955 -2.5256 -0.3715 27 6 5.9006 -1.4745 -0.6183 28 7 2.2697 -1.1427 0.0009 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8899 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.8894 2.1190 -0.0006 33 1 3.7234 3.2866 0.0170 34 1 7.4111 2.2484 0.0361 35 1 8.9528 4.3719 0.0379 36 1 7.2210 7.3293 0.9760 37 1 8.6122 6.8863 -0.0421 38 1 8.1889 10.4964 -0.6346 39 1 4.0794 -3.4732 1.2734 40 1 6.4865 -4.3614 0.7401 41 1 6.1625 -0.6102 -1.2106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447512938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = 148.994298 kcal Electronic energy + Delta-G solvation = -27917.437957 eV Core-core repulsion = 23803.446146 eV Total energy + Delta-G solvation = -4113.991810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.37650 -41.33848 -40.50707 -38.84093 -34.83367 -34.21884 -33.37973 -32.27222 -31.32991 -30.30363 -29.75451 -29.26995 -27.24831 -26.50954 -24.04142 -22.82998 -22.35986 -21.65564 -20.88588 -20.38198 -19.58011 -19.27925 -18.09072 -17.18278 -16.59544 -16.45393 -16.07050 -16.04949 -15.81023 -15.36188 -15.07067 -14.86048 -14.40518 -14.11257 -13.82817 -13.74246 -13.36712 -13.13234 -12.85224 -12.78975 -12.72407 -12.35307 -12.26528 -12.20840 -11.75706 -11.19400 -11.03828 -10.89654 -10.45518 -10.38919 -10.25979 -9.99834 -9.60663 -9.49059 -9.41504 -8.96153 -8.63743 -8.37644 -8.10244 -7.43377 -6.24718 -4.29732 1.20561 1.37038 1.96923 1.99837 2.63794 2.81886 2.89029 3.07704 3.22909 3.26829 3.28930 3.34075 3.86670 3.89244 4.05502 4.15687 4.31988 4.51229 4.69755 4.74455 4.94011 4.97788 5.00724 5.10468 5.13442 5.27671 5.41558 5.60779 5.79594 5.82825 6.09671 6.15586 6.30544 6.35058 6.44315 6.52417 6.66996 6.87643 7.05842 7.08992 7.29410 7.43804 7.61585 7.71508 7.89714 8.05847 8.32922 8.64788 8.80260 9.35816 10.83999 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.002464 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.201140 B =11362.382146 C =12821.220938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.364 5.364 3 C 0.107 3.893 4 C -0.282 4.282 5 C 0.604 3.396 6 O -0.520 6.520 7 N -0.628 5.628 8 C 0.260 3.740 9 C -0.285 4.285 10 C 0.051 3.949 11 N -0.319 5.319 12 C 0.258 3.742 13 C -0.528 4.528 14 H 0.069 0.931 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.908 3.092 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 N -0.306 5.306 22 C 0.213 3.787 23 C -0.145 4.145 24 C -0.187 4.187 25 C -0.049 4.049 26 O -0.180 6.180 27 C 0.055 3.945 28 N -0.287 5.287 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.188 0.812 33 H 0.406 0.594 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.267 0.733 39 H 0.149 0.851 40 H 0.202 0.798 41 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.924 -22.373 1.929 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.142 5.142 3 C -0.042 4.042 4 C -0.298 4.298 5 C 0.392 3.608 6 O -0.396 6.396 7 N -0.274 5.274 8 C 0.007 3.993 9 C -0.316 4.316 10 C -0.099 4.099 11 N -0.101 5.101 12 C 0.141 3.859 13 C -0.566 4.566 14 H 0.087 0.913 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.735 3.265 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 N -0.138 5.138 22 C 0.045 3.955 23 C -0.149 4.149 24 C -0.207 4.207 25 C -0.115 4.115 26 O -0.075 6.075 27 C -0.016 4.016 28 N -0.107 5.107 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.205 0.795 33 H 0.241 0.759 34 H 0.179 0.821 35 H 0.185 0.815 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.167 0.833 40 H 0.219 0.781 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -12.457 -22.387 1.876 25.688 hybrid contribution -0.273 1.031 -0.488 1.172 sum -12.730 -21.356 1.389 24.901 Atomic orbital electron populations 1.22023 0.73396 1.05105 1.03975 1.48123 1.07235 1.03347 1.55531 1.23043 0.90500 0.93742 0.96951 1.21081 0.92056 0.92830 1.23795 1.16960 0.87871 0.80231 0.75782 1.90645 1.25776 1.73622 1.49549 1.42243 1.07407 1.04775 1.72988 1.19048 0.87238 0.89611 1.03428 1.21532 0.89940 1.00272 1.19872 1.22570 0.98117 0.86790 1.02451 1.49064 1.01334 1.07975 1.51751 1.19736 0.95855 0.71085 0.99241 1.21258 1.29286 0.95033 1.11044 0.91307 1.24950 0.95008 0.97136 0.97018 1.69921 1.35409 1.10952 1.37082 0.86329 0.79008 0.79170 0.81994 1.20376 1.20988 1.19715 1.77318 1.00255 1.08042 1.28134 1.20772 0.90126 0.89488 0.95132 1.18827 0.92814 0.95806 1.07429 1.22719 0.98032 0.95313 1.04642 1.23807 0.93077 0.95810 0.98821 1.83950 1.41919 1.26188 1.55415 1.24633 0.87888 0.89600 0.99444 1.77415 1.01229 1.06262 1.25818 0.90168 0.88845 0.88848 0.79519 0.75900 0.82110 0.81528 0.93760 0.92533 0.92331 0.83281 0.78120 0.76454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.41 11.39 59.85 0.68 1.09 16 2 N -0.36 -3.30 3.95 -67.63 -0.27 -3.57 16 3 C 0.11 0.96 10.94 -16.63 -0.18 0.78 16 4 C -0.28 -3.51 6.31 -102.95 -0.65 -4.16 16 5 C 0.60 8.89 7.77 -12.61 -0.10 8.79 16 6 O -0.52 -8.65 10.16 5.25 0.05 -8.60 16 7 N -0.63 -9.48 5.44 -12.16 -0.07 -9.55 16 8 C 0.26 5.08 8.11 -154.43 -1.25 3.83 16 9 C -0.28 -5.50 9.60 -39.83 -0.38 -5.89 16 10 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 11 N -0.32 -7.33 3.67 -62.56 -0.23 -7.56 16 12 C 0.26 6.51 6.26 -5.20 -0.03 6.47 16 13 C -0.53 -14.54 9.24 -34.44 -0.32 -14.85 16 14 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 15 C 0.06 1.68 5.46 -17.81 -0.10 1.59 16 16 N -0.90 -25.18 13.29 55.43 0.74 -24.44 16 17 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 21 N -0.31 -6.90 12.42 31.43 0.39 -6.51 16 22 C 0.21 2.85 7.34 -80.54 -0.59 2.25 16 23 C -0.15 -1.93 6.07 -103.18 -0.63 -2.55 16 24 C -0.19 -2.09 11.15 -37.52 -0.42 -2.51 16 25 C -0.05 -0.48 12.05 29.36 0.35 -0.12 16 26 O -0.18 -2.17 10.55 6.68 0.07 -2.10 16 27 C 0.06 0.71 10.28 29.88 0.31 1.02 16 28 N -0.29 -3.55 12.50 34.58 0.43 -3.12 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.16 8.13 -51.93 -0.42 -0.26 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.19 0.91 7.48 -52.49 -0.39 0.52 16 33 H 0.41 4.84 7.78 -40.82 -0.32 4.53 16 34 H 0.16 2.97 5.91 -52.48 -0.31 2.66 16 35 H 0.17 2.68 8.06 -52.48 -0.42 2.26 16 36 H 0.04 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.20 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.22 2.80 6.35 -52.49 -0.33 2.46 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -35.46 364.68 -6.18 -41.65 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.28 Total: 5.63 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -3.50 Total: -3.47 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 1.00 Total: -54.75 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.12 Total: -10.69 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.46 -6.18 -41.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447512938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.639 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds