Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47498 * 2 1 4 4 C 1.46502 * 120.00006 * 270.00230 * 3 2 1 5 5 C 1.50689 * 109.47006 * 269.99701 * 4 3 2 6 6 H 1.07997 * 120.00464 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99976 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00123 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00165 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47258 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47159 * 119.99798 * 9 7 5 12 12 H 1.48496 * 109.47580 * 239.99817 * 9 7 5 13 13 C 1.34780 * 119.99834 * 89.99982 * 3 2 1 14 14 O 1.21274 * 119.99928 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99982 * 0.02562 * 13 3 2 16 16 N 1.46500 * 109.47095 * 180.02562 * 15 13 3 17 17 C 1.38996 * 119.99946 * 180.02562 * 16 15 13 18 18 C 1.38826 * 120.13844 * 5.56744 * 17 16 15 19 19 C 1.38228 * 120.06764 * 179.97438 * 18 17 16 20 20 F 1.35099 * 119.82478 * 180.02562 * 19 18 17 21 21 C 1.39077 * 120.34954 * 359.97438 * 19 18 17 22 22 F 1.35094 * 119.85914 * 180.02562 * 21 19 18 23 23 C 1.37793 * 120.27964 * 0.04715 * 21 19 18 24 24 C 1.39853 * 119.92400 * 359.97438 * 23 21 19 25 25 C 1.47315 * 120.17297 * 180.02562 * 24 23 21 26 26 N 1.34775 * 119.99726 * 354.10436 * 25 24 23 27 27 O 1.21610 * 120.00074 * 174.10124 * 25 24 23 28 28 H 1.08994 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46667 * 300.00018 * 1 2 3 30 30 H 1.09005 * 109.47195 * 59.99482 * 1 2 3 31 31 H 1.09003 * 109.46667 * 239.99982 * 2 1 3 32 32 H 1.09005 * 109.47195 * 120.00518 * 2 1 3 33 33 H 1.08997 * 109.46997 * 30.00388 * 4 3 2 34 34 H 1.09005 * 109.46681 * 149.99788 * 4 3 2 35 35 H 0.97000 * 120.00617 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47160 * 59.99954 * 15 13 3 37 37 H 1.09007 * 109.47176 * 300.00232 * 15 13 3 38 38 H 0.96999 * 119.99585 * 359.97438 * 16 15 13 39 39 H 1.07997 * 119.96383 * 0.25853 * 18 17 16 40 40 H 1.07998 * 120.03639 * 180.02562 * 23 21 19 41 41 H 0.97005 * 120.00225 * 359.97438 * 26 25 24 42 42 H 0.97004 * 119.99985 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8774 8 7 3.3494 3.1266 -3.6176 9 14 5.9133 2.0963 -3.4171 10 1 6.6004 1.2393 -2.4177 11 1 5.9203 1.4181 -4.7382 12 1 6.6216 3.3970 -3.5247 13 6 2.2431 2.0165 1.1673 14 8 2.6469 3.1600 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3091 2.2036 3.5859 17 6 2.1554 1.7665 4.8963 18 6 1.8137 0.4460 5.1551 19 6 1.6618 0.0127 6.4589 20 9 1.3297 -1.2734 6.7051 21 6 1.8501 0.8936 7.5186 22 9 1.6996 0.4594 8.7890 23 6 2.1891 2.2073 7.2782 24 6 2.3453 2.6582 5.9636 25 6 2.7082 4.0615 5.7003 26 7 2.7742 4.9427 6.7179 27 8 2.9482 4.4247 4.5648 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6878 -2.0283 34 1 2.0956 3.1411 -1.1383 35 1 3.6756 3.5177 -4.4431 36 1 2.6229 0.4186 2.5299 37 1 0.9445 1.0113 2.5302 38 1 2.6267 3.1028 3.4086 39 1 1.6709 -0.2444 4.3371 40 1 2.3348 2.8878 8.1041 41 1 2.5824 4.6530 7.6236 42 1 3.0128 5.8668 6.5445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453127491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = -126.434565 kcal Electronic energy + Delta-G solvation = -29507.968180 eV Core-core repulsion = 24931.343691 eV Total energy + Delta-G solvation = -4576.624488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.65640 -48.69434 -40.68865 -39.30319 -38.24204 -35.82946 -35.21987 -33.84210 -32.83939 -31.12231 -30.28195 -30.00874 -27.80326 -26.08049 -24.56630 -23.14934 -22.98758 -21.99594 -21.28148 -18.93471 -18.67244 -18.12130 -17.80733 -16.80063 -16.59261 -16.50909 -16.46538 -16.14434 -15.85495 -15.36499 -15.14769 -15.03976 -14.92878 -14.80055 -14.62952 -14.07177 -14.00356 -13.57327 -13.49280 -13.42497 -12.95425 -12.72454 -12.49548 -12.08664 -11.99844 -11.86572 -11.66277 -11.25770 -10.94965 -10.82557 -10.60236 -10.25150 -10.19082 -10.17158 -9.98315 -9.67333 -9.37015 -9.12373 -8.47133 -7.80111 -7.70918 -6.08058 -4.12956 0.29883 0.91904 2.44041 3.03251 3.19266 3.21063 3.28072 3.36094 3.36922 3.40269 3.55679 3.87449 4.06528 4.17361 4.41701 4.47284 4.75787 4.81022 5.04943 5.13350 5.23617 5.26845 5.28872 5.33413 5.40802 5.44763 5.54504 5.62489 5.68981 5.94031 6.15320 6.31797 6.40427 6.49006 6.81243 6.98267 7.07246 7.37002 7.44437 7.69691 7.87747 8.14042 8.18038 8.28091 8.79643 8.95399 9.52294 11.00159 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.002832 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.333644 B = 9883.000825 C =10968.834198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.246 3.754 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.498 3.502 14 O -0.526 6.526 15 C 0.085 3.915 16 N -0.691 5.691 17 C 0.305 3.695 18 C -0.228 4.228 19 C 0.155 3.845 20 F -0.123 7.123 21 C -0.018 4.018 22 F -0.135 7.135 23 C -0.034 4.034 24 C -0.222 4.222 25 C 0.573 3.427 26 N -0.850 5.850 27 O -0.528 6.528 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.436 0.564 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.400 0.600 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.232 -5.366 22.824 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.323 5.323 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.283 3.717 14 O -0.403 6.403 15 C -0.043 4.043 16 N -0.328 5.328 17 C 0.189 3.811 18 C -0.252 4.252 19 C 0.134 3.866 20 F -0.102 7.102 21 C -0.040 4.040 22 F -0.114 7.114 23 C -0.054 4.054 24 C -0.231 4.231 25 C 0.360 3.640 26 N -0.414 5.414 27 O -0.405 6.405 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.290 0.710 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.229 0.771 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -5.926 -4.667 21.622 22.900 hybrid contribution 0.936 -0.126 0.225 0.971 sum -4.991 -4.793 21.848 22.917 Atomic orbital electron populations 1.22237 0.96545 1.01650 1.02462 1.21491 0.93687 0.83983 1.02988 1.48225 1.63320 1.13331 1.07448 1.19325 0.96466 0.93700 0.77750 1.21449 0.96839 1.32021 1.06351 0.92363 1.24936 0.97917 0.94854 0.96374 1.69937 1.35623 1.33346 1.14354 0.86433 0.84539 0.78097 0.78293 1.19798 1.20946 1.20844 1.20023 0.79450 0.87204 0.85010 1.90732 1.45348 1.17685 1.86492 1.21485 1.02105 0.94037 0.86714 1.45754 1.66742 1.19805 1.00466 1.17432 0.88057 0.90640 0.84984 1.20484 1.13327 0.95810 0.95581 1.17518 0.97820 0.78599 0.92695 1.91547 1.89245 1.34350 1.95009 1.17014 1.14970 0.93317 0.78702 1.91500 1.94379 1.90011 1.35516 1.20807 0.94936 0.93447 0.96239 1.19002 1.17850 0.94220 0.92042 1.17879 0.76226 0.85032 0.84827 1.43625 1.73953 1.13512 1.10318 1.90636 1.49996 1.78690 1.21208 0.91914 0.93075 0.91852 0.89515 0.91701 0.94732 0.93767 0.92718 0.88992 0.89006 0.70971 0.82983 0.83616 0.77086 0.76143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.10 1.50 5.93 -4.04 -0.02 1.48 16 3 N -0.59 -11.90 2.46 -175.06 -0.43 -12.33 16 4 C 0.25 6.29 5.16 -5.20 -0.03 6.26 16 5 C -0.53 -14.77 9.39 -34.45 -0.32 -15.09 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.50 10.04 7.74 -10.98 -0.09 9.95 16 14 O -0.53 -13.21 15.25 5.56 0.08 -13.12 16 15 C 0.08 1.21 3.97 -5.19 -0.02 1.19 16 16 N -0.69 -10.53 5.56 -59.61 -0.33 -10.86 16 17 C 0.31 3.78 6.65 -83.59 -0.56 3.22 16 18 C -0.23 -2.38 9.27 -39.37 -0.37 -2.75 16 19 C 0.16 1.62 7.30 -39.27 -0.29 1.33 16 20 F -0.12 -1.35 17.17 2.25 0.04 -1.31 16 21 C -0.02 -0.17 7.29 -39.43 -0.29 -0.46 16 22 F -0.14 -1.41 17.17 2.25 0.04 -1.37 16 23 C -0.03 -0.28 9.49 -39.14 -0.37 -0.66 16 24 C -0.22 -2.43 5.89 -104.80 -0.62 -3.05 16 25 C 0.57 6.85 8.01 -12.57 -0.10 6.75 16 26 N -0.85 -5.98 8.82 30.41 0.27 -5.72 16 27 O -0.53 -8.94 14.47 5.27 0.08 -8.86 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 33 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.09 1.10 6.98 -51.93 -0.36 0.74 16 37 H 0.09 1.06 7.17 -51.92 -0.37 0.68 16 38 H 0.44 8.05 3.94 -40.97 -0.16 7.89 16 39 H 0.15 1.33 6.71 -52.49 -0.35 0.98 16 40 H 0.15 0.68 6.44 -52.49 -0.34 0.34 16 41 H 0.40 1.46 6.89 -40.82 -0.28 1.18 16 42 H 0.41 2.51 8.93 -40.82 -0.36 2.14 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -35.64 363.54 -6.40 -42.04 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.56 Total: 6.78 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -2.78 Total: 8.14 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.24 Total: -54.56 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.16 Total: -21.99 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.64 -6.40 -42.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453127491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.397 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds