Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47498 * 2 1 4 4 C 1.46502 * 120.00006 * 270.00230 * 3 2 1 5 5 C 1.50689 * 109.47006 * 269.99701 * 4 3 2 6 6 H 1.07997 * 120.00464 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99976 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00123 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00165 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47258 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47159 * 119.99798 * 9 7 5 12 12 H 1.48496 * 109.47580 * 239.99817 * 9 7 5 13 13 C 1.34780 * 119.99834 * 89.99982 * 3 2 1 14 14 O 1.21274 * 119.99928 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99982 * 0.02562 * 13 3 2 16 16 N 1.46500 * 109.47095 * 180.02562 * 15 13 3 17 17 C 1.38996 * 119.99946 * 180.02562 * 16 15 13 18 18 C 1.38826 * 120.13844 * 5.56744 * 17 16 15 19 19 C 1.38228 * 120.06764 * 179.97438 * 18 17 16 20 20 F 1.35099 * 119.82478 * 180.02562 * 19 18 17 21 21 C 1.39077 * 120.34954 * 359.97438 * 19 18 17 22 22 F 1.35094 * 119.85914 * 180.02562 * 21 19 18 23 23 C 1.37793 * 120.27964 * 0.04715 * 21 19 18 24 24 C 1.39853 * 119.92400 * 359.97438 * 23 21 19 25 25 C 1.47315 * 120.17297 * 180.02562 * 24 23 21 26 26 N 1.34775 * 119.99726 * 354.10436 * 25 24 23 27 27 O 1.21610 * 120.00074 * 174.10124 * 25 24 23 28 28 H 1.08994 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46667 * 300.00018 * 1 2 3 30 30 H 1.09005 * 109.47195 * 59.99482 * 1 2 3 31 31 H 1.09003 * 109.46667 * 239.99982 * 2 1 3 32 32 H 1.09005 * 109.47195 * 120.00518 * 2 1 3 33 33 H 1.08997 * 109.46997 * 30.00388 * 4 3 2 34 34 H 1.09005 * 109.46681 * 149.99788 * 4 3 2 35 35 H 0.97000 * 120.00617 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47160 * 59.99954 * 15 13 3 37 37 H 1.09007 * 109.47176 * 300.00232 * 15 13 3 38 38 H 0.96999 * 119.99585 * 359.97438 * 16 15 13 39 39 H 1.07997 * 119.96383 * 0.25853 * 18 17 16 40 40 H 1.07998 * 120.03639 * 180.02562 * 23 21 19 41 41 H 0.97005 * 120.00225 * 359.97438 * 26 25 24 42 42 H 0.97004 * 119.99985 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8774 8 7 3.3494 3.1266 -3.6176 9 14 5.9133 2.0963 -3.4171 10 1 6.6004 1.2393 -2.4177 11 1 5.9203 1.4181 -4.7382 12 1 6.6216 3.3970 -3.5247 13 6 2.2431 2.0165 1.1673 14 8 2.6469 3.1600 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3091 2.2036 3.5859 17 6 2.1554 1.7665 4.8963 18 6 1.8137 0.4460 5.1551 19 6 1.6618 0.0127 6.4589 20 9 1.3297 -1.2734 6.7051 21 6 1.8501 0.8936 7.5186 22 9 1.6996 0.4594 8.7890 23 6 2.1891 2.2073 7.2782 24 6 2.3453 2.6582 5.9636 25 6 2.7082 4.0615 5.7003 26 7 2.7742 4.9427 6.7179 27 8 2.9482 4.4247 4.5648 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6878 -2.0283 34 1 2.0956 3.1411 -1.1383 35 1 3.6756 3.5177 -4.4431 36 1 2.6229 0.4186 2.5299 37 1 0.9445 1.0113 2.5302 38 1 2.6267 3.1028 3.4086 39 1 1.6709 -0.2444 4.3371 40 1 2.3348 2.8878 8.1041 41 1 2.5824 4.6530 7.6236 42 1 3.0128 5.8668 6.5445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453127491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = -153.662259 kcal Electronic energy + Delta-G solvation = -29509.148861 eV Core-core repulsion = 24931.343691 eV Total energy + Delta-G solvation = -4577.805170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.45852 -49.49348 -41.62996 -40.76288 -39.17836 -37.19055 -36.44940 -34.95225 -34.66669 -31.91080 -31.71528 -31.06217 -29.33407 -27.51114 -25.39165 -24.88397 -24.17250 -23.06440 -22.16248 -20.20564 -19.52987 -19.16547 -18.68806 -18.61435 -17.85407 -17.54841 -17.33355 -17.26128 -17.03526 -16.66788 -16.43919 -16.01631 -15.96906 -15.86240 -15.67225 -15.34987 -14.93543 -14.81185 -14.68586 -14.37935 -14.22909 -14.10486 -13.68912 -13.58041 -13.29597 -13.13729 -12.99978 -12.69965 -12.63871 -12.50114 -12.18629 -11.90717 -11.71058 -11.19752 -11.10325 -10.77971 -10.75498 -10.66750 -10.14279 -9.51252 -8.63675 -8.24646 -6.39161 -0.49653 0.12999 1.34713 1.37513 1.48794 1.58632 1.68027 1.91747 2.34836 2.44112 2.52601 2.53620 2.82386 3.05402 3.25780 3.45128 3.49893 3.77122 3.95512 4.07956 4.19847 4.26820 4.31844 4.43805 4.51705 4.62111 4.65287 4.67801 4.86578 4.92148 4.98830 5.05452 5.19855 5.40785 5.53070 5.55744 5.79674 5.80420 5.98974 6.03596 6.37804 6.56894 6.67817 6.74628 7.23142 7.31474 7.37935 8.82838 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.002832 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.333644 B = 9883.000825 C =10968.834198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.284 1.284 13 C 0.487 3.513 14 O -0.589 6.589 15 C 0.100 3.900 16 N -0.715 5.715 17 C 0.288 3.712 18 C -0.221 4.221 19 C 0.151 3.849 20 F -0.126 7.126 21 C -0.018 4.018 22 F -0.137 7.137 23 C -0.014 4.014 24 C -0.228 4.228 25 C 0.566 3.434 26 N -0.825 5.825 27 O -0.585 6.585 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.026 0.974 34 H -0.006 1.006 35 H 0.267 0.733 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.421 0.579 39 H 0.171 0.829 40 H 0.185 0.815 41 H 0.419 0.581 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 -7.570 25.416 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.326 5.326 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.210 1.210 13 C 0.275 3.725 14 O -0.469 6.469 15 C -0.027 4.027 16 N -0.352 5.352 17 C 0.174 3.826 18 C -0.244 4.244 19 C 0.130 3.870 20 F -0.104 7.104 21 C -0.041 4.041 22 F -0.116 7.116 23 C -0.034 4.034 24 C -0.237 4.237 25 C 0.354 3.646 26 N -0.389 5.389 27 O -0.467 6.467 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.044 0.956 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.272 0.728 39 H 0.189 0.811 40 H 0.202 0.798 41 H 0.252 0.748 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.908 -6.942 24.317 25.969 hybrid contribution 0.865 0.576 -0.443 1.130 sum -5.043 -6.365 23.873 25.217 Atomic orbital electron populations 1.22181 0.94400 1.03773 1.01765 1.21880 0.95445 0.80870 1.04584 1.48219 1.63315 1.15296 1.05807 1.18728 0.95429 0.91482 0.80274 1.21740 0.97872 1.31965 1.06516 0.92707 1.25862 1.02379 0.94481 0.96492 1.70056 1.37693 1.34206 1.14856 0.85366 0.79012 0.77948 0.78469 1.19062 1.19275 1.20985 1.21085 0.77893 0.86718 0.86778 1.90698 1.48003 1.20647 1.87583 1.21482 1.04630 0.93584 0.82998 1.45774 1.68429 1.19401 1.01600 1.17674 0.89050 0.91696 0.84153 1.20561 1.12504 0.95174 0.96197 1.17610 0.97920 0.78582 0.92918 1.91544 1.89292 1.34570 1.95014 1.17158 1.14679 0.93719 0.78494 1.91505 1.94376 1.90077 1.35613 1.21050 0.92791 0.93443 0.96101 1.19083 1.18059 0.93695 0.92863 1.18151 0.75787 0.85954 0.84669 1.43444 1.71862 1.13224 1.10367 1.90631 1.52821 1.79607 1.23609 0.88258 0.91982 0.94407 0.90551 0.87452 0.95574 0.98741 0.92414 0.86052 0.85654 0.72782 0.81144 0.79758 0.74828 0.75419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.24 71.98 0.74 -2.91 16 2 C 0.09 2.61 5.93 86.38 0.51 3.13 16 3 N -0.60 -24.47 2.46 -826.16 -2.03 -26.50 16 4 C 0.26 14.14 5.16 85.63 0.44 14.59 16 5 C -0.54 -31.39 9.39 25.60 0.24 -31.15 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 9 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 13 C 0.49 20.12 7.74 87.66 0.68 20.80 16 14 O -0.59 -31.46 15.25 -3.01 -0.05 -31.50 16 15 C 0.10 2.71 3.97 85.63 0.34 3.05 16 16 N -0.71 -21.62 5.56 -342.51 -1.90 -23.53 16 17 C 0.29 6.70 6.65 38.67 0.26 6.95 16 18 C -0.22 -4.00 9.27 22.41 0.21 -3.79 16 19 C 0.15 2.72 7.30 22.47 0.16 2.89 16 20 F -0.13 -2.40 17.17 44.97 0.77 -1.63 16 21 C -0.02 -0.30 7.29 22.37 0.16 -0.14 16 22 F -0.14 -2.43 17.17 44.97 0.77 -1.66 16 23 C -0.01 -0.19 9.49 22.56 0.21 0.02 16 24 C -0.23 -4.61 5.89 -19.98 -0.12 -4.72 16 25 C 0.57 13.21 8.01 86.63 0.69 13.91 16 26 N -0.82 -10.12 8.82 -175.97 -1.55 -11.67 16 27 O -0.59 -20.62 14.47 -4.06 -0.06 -20.68 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 30 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.08 2.29 8.07 -2.39 -0.02 2.27 16 32 H 0.11 2.08 6.44 -2.38 -0.02 2.06 16 33 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 34 H -0.01 -0.35 7.42 -2.38 -0.02 -0.37 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.12 2.53 6.98 -2.38 -0.02 2.51 16 37 H 0.13 2.50 7.17 -2.38 -0.02 2.48 16 38 H 0.42 16.19 3.94 -95.06 -0.37 15.81 16 39 H 0.17 2.34 6.71 -2.91 -0.02 2.32 16 40 H 0.19 0.88 6.44 -2.91 -0.02 0.86 16 41 H 0.42 1.71 6.89 -92.70 -0.64 1.08 16 42 H 0.41 4.54 8.93 -92.71 -0.83 3.71 16 Total: -1.00 -84.81 363.54 2.55 -82.27 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -0.71 Total: 20.39 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 4.99 Total: 23.49 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -5.20 Total: -118.09 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.10 Total: -52.18 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 1.54 Total: -3.29 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -84.81 2.55 -82.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453127491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.393 kcal (2) G-P(sol) polarization free energy of solvation -84.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds