Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 5 5 C 1.34777 * 119.99854 * 84.99752 * 4 2 1 6 6 O 1.21593 * 119.99953 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00097 * 180.27545 * 5 4 2 8 8 C 1.47021 * 125.64656 * 359.42380 * 7 5 4 9 9 C 1.54339 * 107.26633 * 178.84800 * 8 7 5 10 10 C 1.55158 * 103.02072 * 338.13723 * 9 8 7 11 11 O 1.42901 * 111.00724 * 277.23574 * 10 9 8 12 12 C 1.50692 * 111.03807 * 153.39716 * 10 9 8 13 13 H 1.08003 * 120.00461 * 6.32730 * 12 10 9 14 14 C 1.37878 * 120.00332 * 186.33479 * 12 10 9 15 15 N 1.31522 * 119.99502 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00593 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46912 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47167 * 119.99605 * 16 14 12 19 19 H 1.48493 * 109.47323 * 239.99960 * 16 14 12 20 20 C 1.47426 * 125.64872 * 179.72565 * 7 5 4 21 21 C 1.50700 * 109.47460 * 120.00542 * 2 1 3 22 22 C 1.38812 * 120.81013 * 74.71328 * 21 2 1 23 23 F 1.35104 * 120.43269 * 0.02562 * 22 21 2 24 24 C 1.38461 * 119.14214 * 179.78439 * 22 21 2 25 25 N 1.31847 * 120.77702 * 0.50232 * 24 22 21 26 26 C 1.31847 * 121.77930 * 359.75071 * 25 24 22 27 27 C 1.38459 * 120.77960 * 359.97438 * 26 25 24 28 28 F 1.35097 * 120.43095 * 179.97438 * 27 26 25 29 29 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 30 30 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 31 31 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00410 * 265.00478 * 4 2 1 33 33 H 1.09000 * 109.88280 * 298.39038 * 8 7 5 34 34 H 1.09001 * 109.88287 * 59.55703 * 8 7 5 35 35 H 1.09000 * 110.85247 * 219.67418 * 9 8 7 36 36 H 1.08994 * 110.51545 * 96.44877 * 9 8 7 37 37 H 0.96697 * 114.00376 * 173.64422 * 11 10 9 38 38 H 0.97005 * 119.99579 * 180.02562 * 15 14 12 39 39 H 1.09003 * 110.37118 * 322.92989 * 20 7 5 40 40 H 1.08998 * 110.36604 * 85.15028 * 20 7 5 41 41 H 1.07999 * 119.61080 * 180.25276 * 24 22 21 42 42 H 1.07998 * 119.61251 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8581 1.1617 -2.4116 7 7 2.5909 -0.6548 -3.4590 8 6 2.9799 -2.0707 -3.5322 9 6 3.3909 -2.3579 -4.9919 10 6 2.6799 -1.2290 -5.7839 11 8 1.3176 -1.5692 -6.0495 12 6 3.4153 -0.9191 -7.0622 13 1 4.2532 -1.5297 -7.3649 14 6 3.0186 0.1440 -7.8455 15 7 1.9981 0.8873 -7.4771 16 14 3.9306 0.5285 -9.4297 17 1 5.0325 -0.4494 -9.6164 18 1 2.9905 0.4405 -10.5759 19 1 4.4941 1.9004 -9.3560 20 6 2.7727 -0.0452 -4.7889 21 6 2.0324 -0.7105 1.2304 22 6 1.9731 -2.0940 1.3265 23 9 1.4624 -2.8291 0.3144 24 6 2.4486 -2.7114 2.4709 25 7 2.9437 -2.0006 3.4649 26 6 3.0114 -0.6849 3.4114 27 6 2.5607 0.0030 2.2975 28 9 2.6330 1.3512 2.2504 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2489 -1.6318 -1.1528 33 1 3.8206 -2.2592 -2.8645 34 1 2.1354 -2.7020 -3.2558 35 1 3.0327 -3.3369 -5.3104 36 1 4.4726 -2.2863 -5.1053 37 1 0.8062 -0.8563 -6.4559 38 1 1.7188 1.6350 -8.0284 39 1 1.9818 0.6787 -4.9859 40 1 3.7496 0.4335 -4.8564 41 1 2.4099 -3.7877 2.5520 42 1 3.4240 -0.1374 4.2458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592022805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -122.583307 kcal Electronic energy + Delta-G solvation = -30436.632782 eV Core-core repulsion = 25860.175297 eV Total energy + Delta-G solvation = -4576.457485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.60534 -49.50305 -40.59922 -39.70315 -37.64772 -35.87429 -34.24961 -32.47526 -32.22750 -31.18708 -30.47437 -29.41214 -27.72931 -25.46246 -24.84174 -24.07486 -22.84071 -21.67739 -19.86422 -19.66394 -18.62172 -18.30205 -17.94520 -17.11542 -16.85864 -16.62688 -16.31263 -15.85750 -15.70812 -15.24129 -15.02932 -14.88806 -14.50188 -14.28561 -14.14913 -13.86965 -13.67045 -13.51652 -13.05260 -12.85547 -12.82738 -12.65185 -12.19249 -12.05542 -11.67132 -11.59601 -11.37485 -11.05589 -10.83081 -10.60976 -10.46394 -10.36371 -10.19771 -10.11073 -9.66928 -9.45254 -9.37262 -9.02191 -8.70182 -8.36307 -7.73237 -6.27561 -4.37277 0.20274 0.27413 2.80721 3.02324 3.20047 3.21476 3.29041 3.32217 3.52581 3.62871 3.78860 3.88325 4.07710 4.25944 4.42668 4.50562 4.88838 4.99060 5.00998 5.07750 5.18264 5.26202 5.39437 5.53193 5.62752 5.70405 5.79811 5.95279 6.00427 6.09294 6.12183 6.49890 6.59330 6.69089 6.87159 6.92243 7.09274 7.21262 7.31441 7.57888 7.74497 8.03189 8.46578 8.67001 9.05387 9.30173 9.38429 10.79458 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.002786 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.095323 B =10048.876987 C =10500.741859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.110 0.890 4 N -0.749 5.749 5 C 0.719 3.281 6 O -0.593 6.593 7 N -0.626 5.626 8 C 0.104 3.896 9 C -0.115 4.115 10 C 0.248 3.752 11 O -0.582 6.582 12 C -0.537 4.537 13 H 0.067 0.933 14 C 0.071 3.929 15 N -0.891 5.891 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.114 3.886 21 C -0.118 4.118 22 C 0.086 3.914 23 F -0.113 7.113 24 C 0.068 3.932 25 N -0.429 5.429 26 C 0.067 3.933 27 C 0.093 3.907 28 F -0.113 7.113 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.395 0.605 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.381 0.619 38 H 0.269 0.731 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.179 0.821 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -5.863 20.513 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.097 3.903 3 H 0.128 0.872 4 N -0.408 5.408 5 C 0.421 3.579 6 O -0.472 6.472 7 N -0.362 5.362 8 C -0.020 4.020 9 C -0.153 4.153 10 C 0.208 3.792 11 O -0.391 6.391 12 C -0.575 4.575 13 H 0.085 0.915 14 C -0.133 4.133 15 N -0.530 5.530 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.008 4.008 21 C -0.128 4.128 22 C 0.064 3.936 23 F -0.091 7.091 24 C -0.091 4.091 25 N -0.136 5.136 26 C -0.091 4.091 27 C 0.071 3.929 28 F -0.092 7.092 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.231 0.769 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.196 0.804 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.360 -5.763 21.414 22.179 hybrid contribution 0.024 0.902 -1.959 2.157 sum 0.384 -4.861 19.455 20.057 Atomic orbital electron populations 1.22209 0.93330 1.02817 1.03477 1.19434 0.94801 0.96857 0.79204 0.87247 1.45267 1.73163 1.13834 1.08514 1.15436 0.78480 0.84547 0.79401 1.90893 1.57851 1.14248 1.84180 1.47931 1.67171 1.11131 1.09960 1.21951 0.98064 0.82800 0.99141 1.22588 1.00394 1.00485 0.91837 1.19637 0.80918 0.87606 0.91072 1.86103 1.24023 1.44763 1.84185 1.21483 1.16105 1.13919 1.06035 0.91485 1.25089 0.94781 0.95191 0.98212 1.69735 1.26036 1.18599 1.38608 0.86351 0.79704 0.78250 0.82605 1.19603 1.20761 1.20788 1.23166 1.01474 0.98716 0.77430 1.20812 1.00806 0.93143 0.98031 1.18474 0.99107 0.88328 0.87667 1.91534 1.84129 1.76023 1.57429 1.23053 0.96373 1.01836 0.87826 1.67800 1.12264 1.06561 1.26984 1.23050 0.98688 0.90416 0.96992 1.18414 1.00503 0.78608 0.95423 1.91591 1.93736 1.27482 1.96349 0.91587 0.90176 0.92053 0.76895 0.93283 0.92567 0.90705 0.90417 0.76916 0.92058 0.89560 0.92438 0.80424 0.80417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.43 37.16 0.35 -1.62 16 2 C 0.20 2.72 2.62 -69.08 -0.18 2.54 16 3 H 0.11 1.65 6.81 -51.93 -0.35 1.30 16 4 N -0.75 -11.71 4.85 -59.81 -0.29 -12.00 16 5 C 0.72 14.70 8.45 -86.92 -0.73 13.97 16 6 O -0.59 -14.18 16.26 5.28 0.09 -14.10 16 7 N -0.63 -13.06 3.33 -176.22 -0.59 -13.64 16 8 C 0.10 1.83 6.15 -3.06 -0.02 1.81 16 9 C -0.12 -2.26 6.13 -24.89 -0.15 -2.41 16 10 C 0.25 5.96 0.87 -89.62 -0.08 5.89 16 11 O -0.58 -14.73 13.16 -35.23 -0.46 -15.20 16 12 C -0.54 -13.87 8.27 -34.44 -0.28 -14.16 16 13 H 0.07 1.70 7.79 -52.48 -0.41 1.29 16 14 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 15 N -0.89 -23.74 10.69 55.43 0.59 -23.15 16 16 Si 0.90 20.30 29.54 -169.99 -5.02 15.27 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 C 0.11 2.75 5.38 -2.52 -0.01 2.74 16 21 C -0.12 -1.25 4.97 -104.20 -0.52 -1.77 16 22 C 0.09 0.81 6.91 -39.29 -0.27 0.54 16 23 F -0.11 -1.14 14.53 2.25 0.03 -1.11 16 24 C 0.07 0.52 11.17 -17.46 -0.20 0.33 16 25 N -0.43 -3.63 10.36 -13.14 -0.14 -3.77 16 26 C 0.07 0.52 11.17 -17.46 -0.20 0.33 16 27 C 0.09 0.88 7.29 -39.29 -0.29 0.59 16 28 F -0.11 -1.18 16.40 2.25 0.04 -1.14 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.71 7.77 -51.93 -0.40 0.31 16 32 H 0.39 5.53 5.27 -40.82 -0.21 5.31 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 37 H 0.38 9.93 7.56 45.56 0.34 10.28 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.09 2.35 7.33 -51.93 -0.38 1.97 16 40 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 41 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.18 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -30.30 358.27 -7.37 -37.67 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -4.35 Total: 15.26 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -2.67 Total: 10.51 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.42 Total: -52.56 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.38 Total: -29.29 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.07 Total: -2.25 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.30 -7.37 -37.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592022805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.918 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds