Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 5 5 C 1.34777 * 119.99854 * 84.99752 * 4 2 1 6 6 O 1.21593 * 119.99953 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00097 * 180.27545 * 5 4 2 8 8 C 1.47021 * 125.64656 * 359.42380 * 7 5 4 9 9 C 1.54339 * 107.26633 * 178.84800 * 8 7 5 10 10 C 1.55158 * 103.02072 * 338.13723 * 9 8 7 11 11 O 1.42901 * 111.00724 * 277.23574 * 10 9 8 12 12 C 1.50692 * 111.03807 * 153.39716 * 10 9 8 13 13 H 1.08003 * 120.00461 * 6.32730 * 12 10 9 14 14 C 1.37878 * 120.00332 * 186.33479 * 12 10 9 15 15 N 1.31522 * 119.99502 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00593 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46912 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47167 * 119.99605 * 16 14 12 19 19 H 1.48493 * 109.47323 * 239.99960 * 16 14 12 20 20 C 1.47426 * 125.64872 * 179.72565 * 7 5 4 21 21 C 1.50700 * 109.47460 * 120.00542 * 2 1 3 22 22 C 1.38812 * 120.81013 * 74.71328 * 21 2 1 23 23 F 1.35104 * 120.43269 * 0.02562 * 22 21 2 24 24 C 1.38461 * 119.14214 * 179.78439 * 22 21 2 25 25 N 1.31847 * 120.77702 * 0.50232 * 24 22 21 26 26 C 1.31847 * 121.77930 * 359.75071 * 25 24 22 27 27 C 1.38459 * 120.77960 * 359.97438 * 26 25 24 28 28 F 1.35097 * 120.43095 * 179.97438 * 27 26 25 29 29 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 30 30 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 31 31 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00410 * 265.00478 * 4 2 1 33 33 H 1.09000 * 109.88280 * 298.39038 * 8 7 5 34 34 H 1.09001 * 109.88287 * 59.55703 * 8 7 5 35 35 H 1.09000 * 110.85247 * 219.67418 * 9 8 7 36 36 H 1.08994 * 110.51545 * 96.44877 * 9 8 7 37 37 H 0.96697 * 114.00376 * 173.64422 * 11 10 9 38 38 H 0.97005 * 119.99579 * 180.02562 * 15 14 12 39 39 H 1.09003 * 110.37118 * 322.92989 * 20 7 5 40 40 H 1.08998 * 110.36604 * 85.15028 * 20 7 5 41 41 H 1.07999 * 119.61080 * 180.25276 * 24 22 21 42 42 H 1.07998 * 119.61251 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8581 1.1617 -2.4116 7 7 2.5909 -0.6548 -3.4590 8 6 2.9799 -2.0707 -3.5322 9 6 3.3909 -2.3579 -4.9919 10 6 2.6799 -1.2290 -5.7839 11 8 1.3176 -1.5692 -6.0495 12 6 3.4153 -0.9191 -7.0622 13 1 4.2532 -1.5297 -7.3649 14 6 3.0186 0.1440 -7.8455 15 7 1.9981 0.8873 -7.4771 16 14 3.9306 0.5285 -9.4297 17 1 5.0325 -0.4494 -9.6164 18 1 2.9905 0.4405 -10.5759 19 1 4.4941 1.9004 -9.3560 20 6 2.7727 -0.0452 -4.7889 21 6 2.0324 -0.7105 1.2304 22 6 1.9731 -2.0940 1.3265 23 9 1.4624 -2.8291 0.3144 24 6 2.4486 -2.7114 2.4709 25 7 2.9437 -2.0006 3.4649 26 6 3.0114 -0.6849 3.4114 27 6 2.5607 0.0030 2.2975 28 9 2.6330 1.3512 2.2504 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2489 -1.6318 -1.1528 33 1 3.8206 -2.2592 -2.8645 34 1 2.1354 -2.7020 -3.2558 35 1 3.0327 -3.3369 -5.3104 36 1 4.4726 -2.2863 -5.1053 37 1 0.8062 -0.8563 -6.4559 38 1 1.7188 1.6350 -8.0284 39 1 1.9818 0.6787 -4.9859 40 1 3.7496 0.4335 -4.8564 41 1 2.4099 -3.7877 2.5520 42 1 3.4240 -0.1374 4.2458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592022805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -144.212795 kcal Electronic energy + Delta-G solvation = -30437.570707 eV Core-core repulsion = 25860.175297 eV Total energy + Delta-G solvation = -4577.395410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.34287 -50.25524 -41.56768 -41.02274 -39.29198 -37.15855 -36.07614 -34.23221 -33.62154 -31.89141 -31.82378 -30.70796 -29.50156 -27.06564 -25.99849 -24.79739 -24.32882 -22.76401 -21.48885 -21.24855 -19.56399 -19.27050 -19.14068 -18.90470 -17.86954 -17.43151 -17.19492 -17.03937 -16.88663 -16.71845 -16.59607 -16.24759 -15.81534 -15.57436 -15.33187 -14.81499 -14.78378 -14.67271 -14.60625 -14.34347 -14.07084 -13.75970 -13.52346 -13.40188 -13.28851 -13.17916 -12.86623 -12.56361 -12.53178 -12.33787 -12.20521 -12.10902 -11.42750 -11.20735 -11.05122 -10.91265 -10.67501 -10.42611 -10.30544 -10.09425 -9.42088 -8.24650 -6.41812 -0.47638 -0.43501 1.40372 1.44253 1.52581 1.55565 2.04142 2.25113 2.38219 2.50176 2.82026 2.88035 2.96632 3.01699 3.26813 3.43093 3.77205 3.81516 3.99425 4.00499 4.08622 4.15418 4.29410 4.32567 4.37303 4.53202 4.57829 4.63250 4.73202 4.74581 5.03898 5.05315 5.07421 5.24360 5.28865 5.33616 5.35850 5.45228 5.75640 5.98592 6.10150 6.46369 6.65571 6.94038 7.27160 7.34936 7.45178 8.80696 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.002786 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.095323 B =10048.876987 C =10500.741859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.200 3.800 3 H 0.087 0.913 4 N -0.729 5.729 5 C 0.714 3.286 6 O -0.636 6.636 7 N -0.632 5.632 8 C 0.106 3.894 9 C -0.109 4.109 10 C 0.232 3.768 11 O -0.586 6.586 12 C -0.554 4.554 13 H 0.070 0.930 14 C 0.025 3.975 15 N -0.915 5.915 16 Si 0.965 3.035 17 H -0.263 1.263 18 H -0.280 1.280 19 H -0.284 1.284 20 C 0.129 3.871 21 C -0.128 4.128 22 C 0.080 3.920 23 F -0.118 7.118 24 C 0.083 3.917 25 N -0.437 5.437 26 C 0.082 3.918 27 C 0.083 3.917 28 F -0.123 7.123 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.406 0.594 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.373 0.627 38 H 0.268 0.732 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.209 0.791 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 -8.067 22.416 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.095 3.905 3 H 0.105 0.895 4 N -0.388 5.388 5 C 0.416 3.584 6 O -0.518 6.518 7 N -0.368 5.368 8 C -0.017 4.017 9 C -0.147 4.147 10 C 0.192 3.808 11 O -0.394 6.394 12 C -0.592 4.592 13 H 0.088 0.912 14 C -0.176 4.176 15 N -0.554 5.554 16 Si 0.790 3.210 17 H -0.187 1.187 18 H -0.206 1.206 19 H -0.210 1.210 20 C 0.006 3.994 21 C -0.138 4.138 22 C 0.058 3.942 23 F -0.097 7.097 24 C -0.075 4.075 25 N -0.143 5.143 26 C -0.076 4.076 27 C 0.061 3.939 28 F -0.101 7.101 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.244 0.756 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.221 0.779 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.226 0.774 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.501 -8.030 23.364 24.751 hybrid contribution -0.334 1.580 -2.469 2.950 sum 1.167 -6.451 20.896 21.900 Atomic orbital electron populations 1.22138 0.92652 1.03310 1.03100 1.19464 0.95425 0.96086 0.79543 0.89467 1.45102 1.71987 1.14123 1.07623 1.15624 0.78222 0.84182 0.80330 1.90857 1.59575 1.16376 1.85032 1.47877 1.67546 1.12400 1.08979 1.22129 1.00022 0.80792 0.98708 1.22590 1.00635 0.99321 0.92123 1.19868 0.80406 0.89485 0.91038 1.86094 1.24779 1.44425 1.84095 1.21810 1.16377 1.14069 1.06961 0.91201 1.25846 0.95494 0.95138 1.01113 1.69860 1.27175 1.18864 1.39526 0.85401 0.78693 0.77888 0.78999 1.18669 1.20626 1.20955 1.22693 0.98817 0.98184 0.79733 1.20593 1.02218 0.93835 0.97111 1.18542 0.99762 0.87636 0.88247 1.91518 1.84339 1.76008 1.57788 1.23508 0.94341 1.03120 0.86515 1.67932 1.12539 1.06759 1.27120 1.23481 0.96995 0.90289 0.96813 1.18560 1.01233 0.78278 0.95874 1.91571 1.93902 1.28219 1.96430 0.89322 0.93176 0.91027 0.75582 0.89588 0.91021 0.89445 0.89180 0.77891 0.92224 0.93650 0.94201 0.77441 0.77555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.43 71.98 0.68 -3.11 16 2 C 0.20 5.35 2.62 44.24 0.12 5.47 16 3 H 0.09 2.74 6.81 -2.39 -0.02 2.72 16 4 N -0.73 -22.51 4.85 -461.41 -2.24 -24.75 16 5 C 0.71 29.77 8.45 179.06 1.51 31.29 16 6 O -0.64 -31.93 16.26 -4.01 -0.07 -31.99 16 7 N -0.63 -26.50 3.33 -829.70 -2.76 -29.26 16 8 C 0.11 3.50 6.15 86.73 0.53 4.03 16 9 C -0.11 -4.09 6.13 31.79 0.19 -3.90 16 10 C 0.23 11.25 0.87 -10.15 -0.01 11.24 16 11 O -0.59 -30.18 13.16 -148.98 -1.96 -32.14 16 12 C -0.55 -28.76 8.27 25.60 0.21 -28.55 16 13 H 0.07 3.50 7.79 -2.91 -0.02 3.48 16 14 C 0.03 1.31 5.29 84.65 0.45 1.76 16 15 N -0.92 -50.34 10.69 21.45 0.23 -50.11 16 16 Si 0.96 41.91 29.54 68.60 2.03 43.94 16 17 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 C 0.13 6.46 5.38 86.86 0.47 6.92 16 21 C -0.13 -2.53 4.97 -19.59 -0.10 -2.63 16 22 C 0.08 1.30 6.91 22.46 0.16 1.46 16 23 F -0.12 -2.10 14.53 44.97 0.65 -1.44 16 24 C 0.08 1.00 11.17 84.74 0.95 1.95 16 25 N -0.44 -5.88 10.36 -195.47 -2.02 -7.90 16 26 C 0.08 1.03 11.17 84.74 0.95 1.98 16 27 C 0.08 1.43 7.29 22.46 0.16 1.60 16 28 F -0.12 -2.47 16.40 44.97 0.74 -1.73 16 29 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.60 7.77 -2.39 -0.02 1.58 16 32 H 0.41 10.66 5.27 -92.71 -0.49 10.17 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.09 3.14 8.03 -2.39 -0.02 3.12 16 37 H 0.37 20.21 7.56 -74.06 -0.56 19.65 16 38 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 39 H 0.04 2.61 7.33 -2.39 -0.02 2.60 16 40 H 0.04 2.08 8.03 -2.39 -0.02 2.06 16 41 H 0.21 1.16 8.06 -2.91 -0.02 1.13 16 42 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -68.12 358.27 0.91 -67.20 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: 0.04 Total: 38.67 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 6.27 Total: 29.51 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -6.79 Total: -112.02 kcal Atomic # 8 Polarization: -62.10 SS G_CDS: -2.03 Total: -64.13 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 1.39 Total: -3.17 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -68.12 0.91 -67.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592022805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.008 kcal (2) G-P(sol) polarization free energy of solvation -68.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds