Wall clock time and date at job start Sat Apr 11 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48510 * 109.47113 * 267.32620 * 3 2 1 5 5 H 1.48496 * 109.47139 * 27.32557 * 3 2 1 6 6 H 1.48497 * 109.47369 * 147.32859 * 3 2 1 7 7 C 1.37876 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00659 * 353.51244 * 7 2 1 9 9 C 1.50702 * 119.99715 * 173.51587 * 7 2 1 10 10 O 1.42897 * 110.88931 * 328.70356 * 9 7 2 11 11 C 1.55159 * 111.03899 * 92.61008 * 9 7 2 12 12 C 1.54327 * 103.02532 * 153.39434 * 11 9 7 13 13 N 1.47029 * 107.26504 * 338.14289 * 12 11 9 14 14 C 1.34770 * 125.65049 * 178.85022 * 13 12 11 15 15 O 1.21283 * 120.00059 * 179.68699 * 14 13 12 16 16 C 1.50706 * 119.99857 * 359.96704 * 14 13 12 17 17 O 1.42904 * 109.46951 * 179.72773 * 16 14 13 18 18 C 1.35802 * 116.99544 * 180.02562 * 17 16 14 19 19 C 1.36666 * 120.23435 * 359.71543 * 18 17 16 20 20 C 1.39195 * 120.92295 * 179.73495 * 19 18 17 21 21 C 1.36171 * 121.05951 * 0.57415 * 20 19 18 22 22 C 1.40529 * 119.76713 * 359.70848 * 21 20 19 23 23 C 1.40558 * 121.26663 * 180.02562 * 22 21 20 24 24 C 1.36107 * 119.64509 * 179.97438 * 23 22 21 25 25 C 1.39360 * 120.97914 * 0.02562 * 24 23 22 26 26 C 1.36135 * 120.97665 * 359.97329 * 25 24 23 27 27 C 1.40411 * 119.66555 * 0.04630 * 26 25 24 28 28 C 1.47425 * 108.69818 * 358.58334 * 13 12 11 29 29 H 0.97001 * 119.99997 * 359.97438 * 1 2 3 30 30 H 0.96703 * 114.00170 * 292.32566 * 10 9 7 31 31 H 1.09006 * 110.71782 * 271.95536 * 11 9 7 32 32 H 1.09002 * 110.71929 * 35.04258 * 11 9 7 33 33 H 1.08998 * 109.99219 * 218.66658 * 12 11 9 34 34 H 1.09002 * 109.77821 * 97.49526 * 12 11 9 35 35 H 1.09006 * 109.47014 * 299.72055 * 16 14 13 36 36 H 1.09000 * 109.47408 * 59.72435 * 16 14 13 37 37 H 1.08006 * 119.53424 * 0.02747 * 19 18 17 38 38 H 1.08004 * 119.46722 * 180.28297 * 20 19 18 39 39 H 1.07994 * 120.11580 * 179.73294 * 21 20 19 40 40 H 1.07994 * 120.18091 * 359.95716 * 23 22 21 41 41 H 1.07998 * 119.50437 * 180.02562 * 24 23 22 42 42 H 1.07993 * 119.50875 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.16620 * 179.97438 * 26 25 24 44 44 H 1.09007 * 110.36272 * 143.20026 * 28 13 12 45 45 H 1.09006 * 110.36461 * 265.51762 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5532 2.0138 -1.3986 5 1 1.4195 2.6683 0.6427 6 1 3.5173 1.4572 0.7558 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1264 0.1047 9 6 3.5042 -1.1981 -0.1479 10 8 3.9403 -0.0994 -0.9507 11 6 4.2003 -1.1845 1.2387 12 6 5.5567 -1.8632 0.9538 13 7 5.3952 -2.6653 -0.2678 14 6 6.3601 -3.3952 -0.8615 15 8 6.1114 -4.0254 -1.8675 16 6 7.7465 -3.4334 -0.2718 17 8 8.5813 -4.2733 -1.0716 18 6 9.8720 -4.4172 -0.6747 19 6 10.3252 -3.7702 0.4406 20 6 11.6438 -3.9118 0.8634 21 6 12.5234 -4.6887 0.1729 22 6 12.0982 -5.3661 -0.9826 23 6 12.9793 -6.1766 -1.7189 24 6 12.5321 -6.8182 -2.8329 25 6 11.2113 -6.6835 -3.2567 26 6 10.3303 -5.9069 -2.5682 27 6 10.7555 -5.2294 -1.4142 28 6 4.0011 -2.5441 -0.7319 29 1 -0.4850 0.8401 0.0004 30 1 3.6749 -0.1604 -1.8786 31 1 4.3439 -0.1619 1.5881 32 1 3.6263 -1.7612 1.9640 33 1 5.8327 -2.5088 1.7874 34 1 6.3238 -1.1042 0.8001 35 1 8.1599 -2.4250 -0.2501 36 1 7.6990 -3.8286 0.7429 37 1 9.6494 -3.1441 1.0044 38 1 11.9757 -3.3933 1.7508 39 1 13.5442 -4.7843 0.5123 40 1 14.0057 -6.2896 -1.4027 41 1 13.2110 -7.4407 -3.3968 42 1 10.8819 -7.2030 -4.1443 43 1 9.3098 -5.8116 -2.9086 44 1 3.9646 -2.5216 -1.8211 45 1 3.4005 -3.3689 -0.3483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592837349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:18 Heat of formation + Delta-G solvation = -64.863534 kcal Electronic energy + Delta-G solvation = -28760.229460 eV Core-core repulsion = 24708.211670 eV Total energy + Delta-G solvation = -4052.017789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04963 -39.90808 -38.72741 -37.49049 -36.20290 -34.88215 -32.45601 -32.41875 -30.88143 -30.56644 -29.28722 -28.77665 -27.87721 -25.13431 -23.58137 -23.30953 -22.60815 -21.85783 -19.96687 -19.42214 -18.43558 -17.77696 -17.56022 -16.97110 -16.67112 -16.58996 -15.91378 -15.44668 -15.25983 -15.12648 -14.67982 -14.42347 -14.31504 -13.95280 -13.85090 -13.63433 -13.30720 -13.23818 -12.76975 -12.66538 -12.28806 -12.23634 -12.07051 -11.90580 -11.71564 -11.61114 -11.28034 -11.21850 -11.12750 -11.06274 -10.56888 -10.46814 -10.30982 -9.72046 -9.68358 -9.30755 -8.92399 -8.77109 -8.60702 -8.26539 -7.81428 -6.25442 -4.38367 0.37399 0.72715 1.83947 2.41640 2.68540 2.76994 3.40486 3.47381 3.52077 3.63417 3.87322 4.38279 4.41671 4.43582 4.59415 4.62766 4.76072 4.76695 4.85992 4.93506 4.95695 4.98866 5.03157 5.15955 5.19958 5.23346 5.33017 5.44680 5.67397 5.70107 5.74597 5.79623 5.82587 5.95649 5.97965 6.15945 6.27550 6.32526 6.32843 6.41490 6.45017 6.56575 6.61165 6.71354 6.95109 7.09033 7.37267 7.71503 8.05147 8.27047 8.53556 8.74500 9.35324 10.83251 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.002236 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.895427 B =12519.659382 C =13110.744897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.075 3.925 3 Si 0.952 3.048 4 H -0.293 1.293 5 H -0.326 1.326 6 H -0.270 1.270 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.220 3.780 10 O -0.559 6.559 11 C -0.121 4.121 12 C 0.095 3.905 13 N -0.607 5.607 14 C 0.527 3.473 15 O -0.528 6.528 16 C 0.046 3.954 17 O -0.284 6.284 18 C 0.154 3.846 19 C -0.230 4.230 20 C -0.070 4.070 21 C -0.152 4.152 22 C -0.017 4.017 23 C -0.122 4.122 24 C -0.102 4.102 25 C -0.134 4.134 26 C -0.077 4.077 27 C -0.071 4.071 28 C 0.091 3.909 29 H 0.267 0.733 30 H 0.372 0.628 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.136 0.864 44 H 0.073 0.927 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.091 -8.871 1.212 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.787 3.213 4 H -0.220 1.220 5 H -0.257 1.257 6 H -0.196 1.196 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.180 3.820 10 O -0.367 6.367 11 C -0.160 4.160 12 C -0.028 4.028 13 N -0.341 5.341 14 C 0.313 3.687 15 O -0.405 6.405 16 C -0.033 4.033 17 O -0.195 6.195 18 C 0.107 3.893 19 C -0.249 4.249 20 C -0.088 4.088 21 C -0.170 4.170 22 C -0.017 4.017 23 C -0.140 4.140 24 C -0.120 4.120 25 C -0.152 4.152 26 C -0.095 4.095 27 C -0.072 4.072 28 C -0.030 4.030 29 H 0.077 0.923 30 H 0.221 0.779 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.154 0.846 44 H 0.091 0.909 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 24.980 -9.079 1.027 26.598 hybrid contribution 0.096 0.858 -0.172 0.881 sum 25.075 -8.221 0.855 26.402 Atomic orbital electron populations 1.69963 1.06858 1.27914 1.47280 1.25122 0.94893 1.00554 0.92502 0.85637 0.77750 0.79930 0.77956 1.22040 1.25733 1.19588 1.21081 0.88276 0.95529 1.54225 0.90007 1.20248 0.93837 0.80951 0.87008 1.86110 1.80064 1.46530 1.24032 1.22988 0.92682 1.01101 0.99191 1.22231 1.00582 0.93972 0.86005 1.48480 1.11331 1.46677 1.27644 1.19453 0.84894 0.79888 0.84440 1.90729 1.81830 1.43280 1.24632 1.22538 0.89694 0.95836 0.95189 1.86089 1.18000 1.64478 1.50967 1.18753 0.83392 0.94186 0.92954 1.20886 0.98269 1.06313 0.99384 1.20563 0.92396 0.96951 0.98938 1.20869 1.00090 1.00106 0.95960 1.17895 0.91824 0.96768 0.95255 1.20949 0.99175 0.97922 0.95935 1.20919 0.95911 0.98721 0.96407 1.20862 0.93628 1.00051 1.00660 1.21122 1.00488 0.94608 0.93295 1.17455 0.92366 1.00188 0.97152 1.23201 0.78859 1.00838 1.00122 0.92318 0.77946 0.89942 0.89415 0.92034 0.91814 0.88880 0.88931 0.85290 0.85697 0.85517 0.85399 0.85929 0.85772 0.84596 0.90876 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 13.96 55.43 0.77 -24.79 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.95 22.56 24.93 -169.99 -4.24 18.33 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.33 -7.98 7.11 56.52 0.40 -7.58 16 6 H -0.27 -6.17 5.42 56.52 0.31 -5.87 16 7 C -0.55 -14.05 8.89 -34.44 -0.31 -14.36 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.22 4.58 0.70 -89.62 -0.06 4.52 16 10 O -0.56 -11.59 8.52 -35.23 -0.30 -11.89 16 11 C -0.12 -2.17 5.90 -24.89 -0.15 -2.32 16 12 C 0.09 1.37 6.49 -3.06 -0.02 1.35 16 13 N -0.61 -10.18 3.33 -170.51 -0.57 -10.75 16 14 C 0.53 8.89 7.93 -10.99 -0.09 8.80 16 15 O -0.53 -10.97 16.76 -14.35 -0.24 -11.21 16 16 C 0.05 0.58 4.41 36.01 0.16 0.74 16 17 O -0.28 -4.11 8.90 -39.03 -0.35 -4.45 16 18 C 0.15 1.95 6.67 -39.12 -0.26 1.69 16 19 C -0.23 -2.40 8.99 -39.79 -0.36 -2.76 16 20 C -0.07 -0.63 9.94 -39.97 -0.40 -1.03 16 21 C -0.15 -1.38 9.77 -39.46 -0.39 -1.77 16 22 C -0.02 -0.19 5.74 -106.84 -0.61 -0.80 16 23 C -0.12 -1.07 9.77 -39.47 -0.39 -1.46 16 24 C -0.10 -0.86 9.95 -39.93 -0.40 -1.26 16 25 C -0.13 -1.30 9.95 -39.92 -0.40 -1.70 16 26 C -0.08 -0.93 9.56 -39.52 -0.38 -1.30 16 27 C -0.07 -0.89 5.75 -106.73 -0.61 -1.50 16 28 C 0.09 1.76 6.07 -2.53 -0.02 1.74 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.37 6.96 8.98 45.56 0.41 7.37 16 31 H 0.08 1.51 6.66 -51.93 -0.35 1.17 16 32 H 0.09 1.53 8.03 -51.93 -0.42 1.12 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.99 7.64 -51.93 -0.40 0.59 16 36 H 0.09 0.94 7.66 -51.93 -0.40 0.54 16 37 H 0.13 1.10 6.21 -52.48 -0.33 0.78 16 38 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.14 1.72 7.62 -52.49 -0.40 1.32 16 44 H 0.07 1.45 8.02 -51.93 -0.42 1.03 16 45 H 0.08 1.49 7.98 -51.93 -0.41 1.07 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -32.76 369.62 -9.43 -42.19 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.31 Total: 6.51 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -4.76 Total: -9.50 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.21 Total: -35.54 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.89 Total: -27.55 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.24 Total: 18.33 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.76 -9.43 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.674 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds