Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48510 * 109.47113 * 267.32620 * 3 2 1 5 5 H 1.48496 * 109.47139 * 27.32557 * 3 2 1 6 6 H 1.48497 * 109.47369 * 147.32859 * 3 2 1 7 7 C 1.37876 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00659 * 353.51244 * 7 2 1 9 9 C 1.50702 * 119.99715 * 173.51587 * 7 2 1 10 10 O 1.42897 * 110.88931 * 328.70356 * 9 7 2 11 11 C 1.55159 * 111.03899 * 92.61008 * 9 7 2 12 12 C 1.54327 * 103.02532 * 153.39434 * 11 9 7 13 13 N 1.47029 * 107.26504 * 338.14289 * 12 11 9 14 14 C 1.34770 * 125.65049 * 178.85022 * 13 12 11 15 15 O 1.21283 * 120.00059 * 179.68699 * 14 13 12 16 16 C 1.50706 * 119.99857 * 359.96704 * 14 13 12 17 17 O 1.42904 * 109.46951 * 179.72773 * 16 14 13 18 18 C 1.35802 * 116.99544 * 180.02562 * 17 16 14 19 19 C 1.36666 * 120.23435 * 359.71543 * 18 17 16 20 20 C 1.39195 * 120.92295 * 179.73495 * 19 18 17 21 21 C 1.36171 * 121.05951 * 0.57415 * 20 19 18 22 22 C 1.40529 * 119.76713 * 359.70848 * 21 20 19 23 23 C 1.40558 * 121.26663 * 180.02562 * 22 21 20 24 24 C 1.36107 * 119.64509 * 179.97438 * 23 22 21 25 25 C 1.39360 * 120.97914 * 0.02562 * 24 23 22 26 26 C 1.36135 * 120.97665 * 359.97329 * 25 24 23 27 27 C 1.40411 * 119.66555 * 0.04630 * 26 25 24 28 28 C 1.47425 * 108.69818 * 358.58334 * 13 12 11 29 29 H 0.97001 * 119.99997 * 359.97438 * 1 2 3 30 30 H 0.96703 * 114.00170 * 292.32566 * 10 9 7 31 31 H 1.09006 * 110.71782 * 271.95536 * 11 9 7 32 32 H 1.09002 * 110.71929 * 35.04258 * 11 9 7 33 33 H 1.08998 * 109.99219 * 218.66658 * 12 11 9 34 34 H 1.09002 * 109.77821 * 97.49526 * 12 11 9 35 35 H 1.09006 * 109.47014 * 299.72055 * 16 14 13 36 36 H 1.09000 * 109.47408 * 59.72435 * 16 14 13 37 37 H 1.08006 * 119.53424 * 0.02747 * 19 18 17 38 38 H 1.08004 * 119.46722 * 180.28297 * 20 19 18 39 39 H 1.07994 * 120.11580 * 179.73294 * 21 20 19 40 40 H 1.07994 * 120.18091 * 359.95716 * 23 22 21 41 41 H 1.07998 * 119.50437 * 180.02562 * 24 23 22 42 42 H 1.07993 * 119.50875 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.16620 * 179.97438 * 26 25 24 44 44 H 1.09007 * 110.36272 * 143.20026 * 28 13 12 45 45 H 1.09006 * 110.36461 * 265.51762 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5532 2.0138 -1.3986 5 1 1.4195 2.6683 0.6427 6 1 3.5173 1.4572 0.7558 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1264 0.1047 9 6 3.5042 -1.1981 -0.1479 10 8 3.9403 -0.0994 -0.9507 11 6 4.2003 -1.1845 1.2387 12 6 5.5567 -1.8632 0.9538 13 7 5.3952 -2.6653 -0.2678 14 6 6.3601 -3.3952 -0.8615 15 8 6.1114 -4.0254 -1.8675 16 6 7.7465 -3.4334 -0.2718 17 8 8.5813 -4.2733 -1.0716 18 6 9.8720 -4.4172 -0.6747 19 6 10.3252 -3.7702 0.4406 20 6 11.6438 -3.9118 0.8634 21 6 12.5234 -4.6887 0.1729 22 6 12.0982 -5.3661 -0.9826 23 6 12.9793 -6.1766 -1.7189 24 6 12.5321 -6.8182 -2.8329 25 6 11.2113 -6.6835 -3.2567 26 6 10.3303 -5.9069 -2.5682 27 6 10.7555 -5.2294 -1.4142 28 6 4.0011 -2.5441 -0.7319 29 1 -0.4850 0.8401 0.0004 30 1 3.6749 -0.1604 -1.8786 31 1 4.3439 -0.1619 1.5881 32 1 3.6263 -1.7612 1.9640 33 1 5.8327 -2.5088 1.7874 34 1 6.3238 -1.1042 0.8001 35 1 8.1599 -2.4250 -0.2501 36 1 7.6990 -3.8286 0.7429 37 1 9.6494 -3.1441 1.0044 38 1 11.9757 -3.3933 1.7508 39 1 13.5442 -4.7843 0.5123 40 1 14.0057 -6.2896 -1.4027 41 1 13.2110 -7.4407 -3.3968 42 1 10.8819 -7.2030 -4.1443 43 1 9.3098 -5.8116 -2.9086 44 1 3.9646 -2.5216 -1.8211 45 1 3.4005 -3.3689 -0.3483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592837349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = -86.051076 kcal Electronic energy + Delta-G solvation = -28761.148220 eV Core-core repulsion = 24708.211670 eV Total energy + Delta-G solvation = -4052.936550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.88389 -41.15780 -39.78175 -38.86936 -36.92681 -36.41856 -34.46874 -33.20578 -32.25423 -31.37419 -30.40329 -29.78263 -29.14841 -26.82357 -24.41178 -24.20314 -23.75913 -22.65537 -21.60165 -20.69229 -19.47418 -19.22728 -18.62207 -17.81520 -17.73261 -17.67098 -17.15520 -16.78187 -16.59536 -16.40406 -16.16966 -15.43128 -15.15878 -15.09647 -14.93674 -14.64425 -14.53611 -14.28038 -14.10425 -13.96647 -13.71674 -13.37379 -13.23963 -13.16643 -12.91985 -12.76148 -12.64280 -12.30970 -12.21411 -11.99059 -11.96572 -11.94562 -11.78023 -11.27350 -11.02414 -10.65047 -10.49781 -10.42165 -9.68180 -9.63603 -8.55253 -8.34583 -6.48807 -0.35679 0.01009 1.09240 1.35126 1.40694 1.51409 1.53685 1.74599 2.07946 2.42714 2.45754 2.96284 3.14104 3.28646 3.48970 3.72263 3.80961 3.85660 3.92763 3.96571 3.97881 4.06518 4.13461 4.25235 4.28719 4.35170 4.39251 4.48613 4.52139 4.62138 4.65017 4.77281 4.94340 4.99306 5.08593 5.13241 5.14132 5.21413 5.31066 5.36198 5.46554 5.52866 5.56750 5.62064 5.75174 6.02727 6.03610 6.27644 6.43549 6.57447 6.87878 6.96906 7.29117 8.78306 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.002236 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.895427 B =12519.659382 C =13110.744897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.023 3.977 3 Si 1.011 2.989 4 H -0.289 1.289 5 H -0.338 1.338 6 H -0.250 1.250 7 C -0.549 4.549 8 H 0.043 0.957 9 C 0.216 3.784 10 O -0.559 6.559 11 C -0.120 4.120 12 C 0.099 3.901 13 N -0.606 5.606 14 C 0.522 3.478 15 O -0.579 6.579 16 C 0.054 3.946 17 O -0.315 6.315 18 C 0.118 3.882 19 C -0.222 4.222 20 C -0.079 4.079 21 C -0.146 4.146 22 C -0.038 4.038 23 C -0.117 4.117 24 C -0.109 4.109 25 C -0.131 4.131 26 C -0.113 4.113 27 C -0.095 4.095 28 C 0.098 3.902 29 H 0.267 0.733 30 H 0.379 0.621 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.138 0.862 43 H 0.112 0.888 44 H 0.059 0.941 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.916 -8.358 3.061 31.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.177 4.177 3 Si 0.845 3.155 4 H -0.216 1.216 5 H -0.271 1.271 6 H -0.175 1.175 7 C -0.587 4.587 8 H 0.062 0.938 9 C 0.175 3.825 10 O -0.367 6.367 11 C -0.158 4.158 12 C -0.022 4.022 13 N -0.339 5.339 14 C 0.311 3.689 15 O -0.459 6.459 16 C -0.023 4.023 17 O -0.228 6.228 18 C 0.073 3.927 19 C -0.240 4.240 20 C -0.097 4.097 21 C -0.164 4.164 22 C -0.038 4.038 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.149 4.149 26 C -0.131 4.131 27 C -0.095 4.095 28 C -0.025 4.025 29 H 0.076 0.924 30 H 0.229 0.771 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.175 0.825 40 H 0.178 0.822 41 H 0.171 0.829 42 H 0.156 0.844 43 H 0.130 0.870 44 H 0.077 0.923 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 29.846 -8.571 2.898 31.187 hybrid contribution -1.373 0.568 -0.783 1.680 sum 28.472 -8.003 2.115 29.651 Atomic orbital electron populations 1.70092 1.08645 1.28572 1.50158 1.25903 0.95339 1.03875 0.92535 0.84665 0.76932 0.75775 0.78156 1.21630 1.27077 1.17463 1.21334 0.91070 0.93775 1.52487 0.93832 1.20148 0.91381 0.81798 0.89123 1.86065 1.79636 1.46340 1.24696 1.22898 0.94454 1.01848 0.96640 1.22397 0.98903 0.94897 0.86018 1.48472 1.10081 1.47007 1.28370 1.20267 0.86360 0.78580 0.83674 1.90707 1.82880 1.45314 1.27021 1.22554 0.86704 0.97451 0.95640 1.86039 1.19221 1.65379 1.52165 1.18974 0.82803 0.96251 0.94655 1.21226 0.99359 1.05242 0.98217 1.20958 0.91732 0.97084 0.99936 1.21285 1.01527 0.98752 0.94827 1.18257 0.91348 0.97805 0.96436 1.21380 1.00278 0.96464 0.95293 1.21265 0.95549 0.99061 0.96782 1.21141 0.94196 0.98951 1.00611 1.21070 1.00098 0.97096 0.94860 1.17774 0.93596 1.00675 0.97471 1.22833 0.80862 0.99601 0.99219 0.92428 0.77148 0.89722 0.89493 0.87919 0.89123 0.86169 0.85780 0.83192 0.82583 0.82533 0.82224 0.82881 0.84403 0.87033 0.92263 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.07 13.96 21.45 0.30 -55.77 16 2 C 0.02 1.28 5.46 84.65 0.46 1.74 16 3 Si 1.01 46.32 24.93 68.60 1.71 48.03 16 4 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.34 -16.11 7.11 99.48 0.71 -15.40 16 6 H -0.25 -10.51 5.42 99.48 0.54 -9.97 16 7 C -0.55 -28.59 8.89 25.60 0.23 -28.36 16 8 H 0.04 2.55 7.99 -2.91 -0.02 2.52 16 9 C 0.22 8.87 0.70 -10.15 -0.01 8.86 16 10 O -0.56 -22.24 8.52 -148.98 -1.27 -23.51 16 11 C -0.12 -4.00 5.90 31.78 0.19 -3.81 16 12 C 0.10 2.46 6.49 86.73 0.56 3.02 16 13 N -0.61 -19.31 3.33 -811.76 -2.70 -22.01 16 14 C 0.52 17.18 7.93 87.66 0.69 17.88 16 15 O -0.58 -24.82 16.76 16.00 0.27 -24.55 16 16 C 0.05 1.24 4.41 71.24 0.31 1.56 16 17 O -0.32 -9.12 8.90 -72.30 -0.64 -9.76 16 18 C 0.12 2.93 6.67 22.57 0.15 3.08 16 19 C -0.22 -3.98 8.99 22.13 0.20 -3.78 16 20 C -0.08 -1.12 9.94 22.02 0.22 -0.90 16 21 C -0.15 -2.14 9.77 22.35 0.22 -1.92 16 22 C -0.04 -0.75 5.74 -21.30 -0.12 -0.87 16 23 C -0.12 -1.72 9.77 22.34 0.22 -1.50 16 24 C -0.11 -1.62 9.95 22.04 0.22 -1.40 16 25 C -0.13 -2.54 9.95 22.05 0.22 -2.32 16 26 C -0.11 -2.88 9.56 22.31 0.21 -2.66 16 27 C -0.09 -2.37 5.75 -21.23 -0.12 -2.49 16 28 C 0.10 3.80 6.07 86.85 0.53 4.32 16 29 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.38 13.88 8.98 -74.06 -0.67 13.21 16 31 H 0.08 2.80 6.66 -2.38 -0.02 2.79 16 32 H 0.09 2.88 8.03 -2.39 -0.02 2.86 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.12 2.09 7.64 -2.38 -0.02 2.07 16 36 H 0.12 2.03 7.66 -2.39 -0.02 2.01 16 37 H 0.15 1.90 6.21 -2.91 -0.02 1.88 16 38 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 43 H 0.11 3.22 7.62 -2.91 -0.02 3.20 16 44 H 0.06 2.43 8.02 -2.38 -0.02 2.41 16 45 H 0.06 2.58 7.98 -2.38 -0.02 2.56 16 Total: -1.00 -76.52 369.62 2.24 -74.28 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.19 Total: 22.85 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 4.38 Total: -9.56 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -2.40 Total: -77.78 kcal Atomic # 8 Polarization: -56.18 SS G_CDS: -1.64 Total: -57.83 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.71 Total: 48.03 kcal Total: -76.52 2.24 -74.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.771 kcal (2) G-P(sol) polarization free energy of solvation -76.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds