Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00076 * 2 1 4 4 H 1.48499 * 109.47322 * 270.00099 * 3 2 1 5 5 H 1.48504 * 109.46960 * 30.00137 * 3 2 1 6 6 H 1.48502 * 109.47272 * 150.00033 * 3 2 1 7 7 C 1.37878 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00258 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99881 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47002 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47172 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47151 * 179.97438 * 11 10 9 13 13 C 1.39094 * 119.99711 * 180.02562 * 12 11 10 14 14 C 1.40851 * 119.60624 * 0.02562 * 13 12 11 15 15 C 1.35962 * 120.11076 * 180.02562 * 14 13 12 16 16 C 1.40737 * 119.16220 * 0.02562 * 15 14 13 17 17 N 1.32516 * 133.64141 * 179.97438 * 16 15 14 18 18 N 1.28705 * 109.60343 * 180.02562 * 17 16 15 19 19 C 1.32032 * 110.06916 * 0.02562 * 18 17 16 20 20 C 1.47785 * 126.34334 * 179.97438 * 19 18 17 21 21 C 1.39618 * 120.11944 * 194.74588 * 20 19 18 22 22 C 1.37916 * 119.87225 * 180.29621 * 21 20 19 23 23 C 1.38578 * 120.12597 * 359.96027 * 22 21 20 24 24 F 1.35100 * 119.87764 * 180.02562 * 23 22 21 25 25 C 1.38584 * 120.24468 * 0.04406 * 23 22 21 26 26 C 1.37912 * 120.12405 * 359.97438 * 25 23 22 27 27 N 1.36335 * 107.31111 * 0.24134 * 19 18 17 28 28 N 1.31279 * 119.60627 * 180.02562 * 13 12 11 29 29 H 0.97003 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47298 * 60.00053 * 9 7 2 31 31 H 1.09001 * 109.47479 * 300.00064 * 9 7 2 32 32 H 1.09003 * 109.47573 * 60.00328 * 10 9 7 33 33 H 1.09000 * 109.47339 * 299.99591 * 10 9 7 34 34 H 1.09003 * 109.46552 * 59.99766 * 11 10 9 35 35 H 1.09005 * 109.47044 * 300.00389 * 11 10 9 36 36 H 0.96997 * 120.00319 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.94773 * 0.02562 * 14 13 12 38 38 H 1.08004 * 120.42265 * 180.02562 * 15 14 13 39 39 H 1.07995 * 120.06297 * 0.25516 * 21 20 19 40 40 H 1.08000 * 119.93723 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.93945 * 179.97438 * 25 23 22 42 42 H 1.08000 * 120.06781 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 6 5.5515 -2.6367 -0.0035 12 7 6.0398 -4.0179 -0.0040 13 6 7.4073 -4.2721 -0.0046 14 6 8.3152 -3.1952 -0.0042 15 6 9.6540 -3.4319 -0.0053 16 6 10.1154 -4.7614 -0.0074 17 7 11.3213 -5.3110 -0.0093 18 7 11.2113 -6.5934 -0.0113 19 6 9.9370 -6.9389 -0.0114 20 6 9.4032 -8.3170 -0.0139 21 6 8.0610 -8.5478 -0.3212 22 6 7.5667 -9.8353 -0.3161 23 6 8.3998 -10.8989 -0.0076 24 9 7.9105 -12.1582 -0.0046 25 6 9.7329 -10.6756 0.2982 26 6 10.2378 -9.3922 0.2965 27 7 9.2049 -5.7888 -0.0147 28 7 7.8364 -5.5127 -0.0056 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6805 0.8888 31 1 3.8746 -0.6801 -0.8911 32 1 3.6578 -3.1499 -0.8925 33 1 3.6585 -3.1510 0.8875 34 1 5.9155 -2.1233 0.8865 35 1 5.9141 -2.1223 -0.8935 36 1 5.4094 -4.7552 -0.0039 37 1 7.9473 -2.1798 -0.0030 38 1 10.3547 -2.6099 -0.0045 39 1 7.4109 -7.7197 -0.5617 40 1 6.5285 -10.0151 -0.5532 41 1 10.3777 -11.5081 0.5383 42 1 11.2769 -9.2192 0.5345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599039608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = 117.654557 kcal Electronic energy + Delta-G solvation = -27178.390040 eV Core-core repulsion = 23075.412026 eV Total energy + Delta-G solvation = -4102.978014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.135 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.25671 -43.40217 -39.56053 -39.14973 -36.51458 -34.28177 -33.91938 -32.22307 -32.00210 -31.54245 -30.55280 -29.07376 -27.17869 -25.09605 -24.07491 -23.73713 -23.20503 -22.34726 -21.34331 -20.62009 -18.88813 -18.38909 -17.97536 -17.33014 -16.88803 -16.86681 -16.46443 -16.18486 -15.93219 -15.40796 -15.09576 -14.63481 -14.27893 -14.15170 -13.98637 -13.87756 -13.84307 -13.50484 -13.04737 -12.90178 -12.85992 -12.48180 -12.32051 -12.19627 -11.63286 -11.45242 -11.37399 -11.16084 -11.11322 -10.79193 -10.50230 -10.26654 -10.08465 -9.90213 -9.65876 -9.53358 -9.40740 -8.70263 -8.64822 -8.30415 -6.19687 -4.19967 0.03515 0.28802 0.85647 1.23552 1.33199 2.37548 2.85520 2.88232 3.18109 3.26187 3.27345 3.30295 3.54505 3.83810 3.86113 4.03204 4.20908 4.29840 4.35579 4.48562 4.68894 4.78404 4.87071 5.02522 5.12308 5.15736 5.21148 5.25305 5.31882 5.40087 5.55656 5.56416 5.57618 5.71996 5.76047 5.90140 6.05262 6.07840 6.12109 6.41777 6.50712 6.51432 6.98923 7.07500 7.12741 7.47743 7.59390 8.13360 8.34893 8.83736 9.41090 10.93423 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.002085 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.870295 B =13424.847743 C =15369.195305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.689 5.689 13 C 0.422 3.578 14 C -0.171 4.171 15 C 0.008 3.992 16 C 0.127 3.873 17 N -0.251 5.251 18 N -0.249 5.249 19 C 0.236 3.764 20 C -0.027 4.027 21 C -0.059 4.059 22 C -0.154 4.154 23 C 0.111 3.889 24 F -0.137 7.137 25 C -0.156 4.156 26 C -0.048 4.048 27 N -0.263 5.263 28 N -0.355 5.355 29 H 0.265 0.735 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.414 0.586 37 H 0.163 0.837 38 H 0.171 0.829 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.128 -14.658 0.018 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.152 4.152 11 C -0.008 4.008 12 N -0.325 5.325 13 C 0.156 3.844 14 C -0.199 4.199 15 C -0.019 4.019 16 C -0.128 4.128 17 N -0.101 5.101 18 N -0.096 5.096 19 C -0.026 4.026 20 C -0.030 4.030 21 C -0.079 4.079 22 C -0.173 4.173 23 C 0.091 3.909 24 F -0.116 7.116 25 C -0.175 4.175 26 C -0.068 4.068 27 N -0.036 5.036 28 N -0.187 5.187 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.251 0.749 37 H 0.181 0.819 38 H 0.189 0.811 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 21.077 -15.380 0.014 26.092 hybrid contribution -1.112 1.390 -0.020 1.780 sum 19.965 -13.990 -0.006 24.379 Atomic orbital electron populations 1.69907 1.06345 1.27109 1.50390 1.25046 0.94773 0.99275 0.94389 0.86767 0.80287 0.83571 0.78553 1.20215 1.21281 1.19005 1.21044 0.89136 0.94606 1.51677 0.90952 1.19496 0.97593 0.90921 0.96678 1.21721 0.89483 1.01514 1.02460 1.22009 0.97678 0.79361 1.01794 1.44857 1.00481 1.10278 1.76890 1.19361 0.87679 0.89433 0.87938 1.21528 0.92390 1.00924 1.05012 1.20384 0.95686 0.92578 0.93266 1.22392 0.87949 0.92078 1.10352 1.74914 1.16935 1.00156 1.18110 1.74840 1.11929 1.05401 1.17400 1.22306 0.86242 0.86414 1.07614 1.17448 0.93939 0.86965 1.04654 1.21359 0.94074 0.97165 0.95284 1.21083 1.00901 0.91477 1.03806 1.17911 0.92758 0.79292 1.00901 1.91519 1.88263 1.37898 1.93873 1.21063 0.94026 0.98269 1.04147 1.21050 1.00289 0.90067 0.95414 1.47076 1.03950 1.06646 1.45964 1.75478 0.89135 1.17618 1.36515 0.92544 0.96232 0.96670 0.91633 0.91603 0.91229 0.91214 0.74946 0.81912 0.81147 0.83379 0.83996 0.83921 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.96 55.43 0.77 -25.55 16 2 C 0.07 1.83 5.47 -17.82 -0.10 1.73 16 3 Si 0.88 20.01 27.47 -169.99 -4.67 15.34 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -5.63 6.54 56.52 0.37 -5.26 16 7 C -0.53 -13.68 9.66 -34.44 -0.33 -14.01 16 8 H 0.07 2.04 7.99 -52.49 -0.42 1.62 16 9 C -0.01 -0.18 4.04 -27.88 -0.11 -0.29 16 10 C -0.11 -1.71 5.27 -26.73 -0.14 -1.86 16 11 C 0.11 1.25 4.89 -4.04 -0.02 1.23 16 12 N -0.69 -6.97 5.73 -60.17 -0.34 -7.31 16 13 C 0.42 4.52 7.75 -155.22 -1.20 3.32 16 14 C -0.17 -1.49 9.26 -39.41 -0.36 -1.86 16 15 C 0.01 0.08 10.11 -39.45 -0.40 -0.32 16 16 C 0.13 1.61 7.99 -155.96 -1.25 0.36 16 17 N -0.25 -3.58 12.31 31.15 0.38 -3.20 16 18 N -0.25 -3.54 11.99 32.47 0.39 -3.15 16 19 C 0.24 3.12 7.81 -154.31 -1.21 1.92 16 20 C -0.03 -0.30 5.87 -104.97 -0.62 -0.92 16 21 C -0.06 -0.60 9.60 -39.18 -0.38 -0.98 16 22 C -0.15 -1.38 10.01 -39.57 -0.40 -1.78 16 23 C 0.11 1.01 7.30 -39.33 -0.29 0.73 16 24 F -0.14 -1.32 17.26 2.25 0.04 -1.28 16 25 C -0.16 -1.26 10.01 -39.57 -0.40 -1.66 16 26 C -0.05 -0.44 9.70 -39.19 -0.38 -0.82 16 27 N -0.26 -3.48 4.05 -9.98 -0.04 -3.52 16 28 N -0.35 -4.34 10.10 31.32 0.32 -4.03 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 31 H 0.02 0.30 7.57 -51.93 -0.39 -0.10 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 35 H 0.07 0.70 7.93 -51.93 -0.41 0.29 16 36 H 0.41 3.97 8.59 -40.82 -0.35 3.62 16 37 H 0.16 1.02 6.69 -52.49 -0.35 0.67 16 38 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.15 1.57 6.32 -52.49 -0.33 1.24 16 40 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 42 H 0.15 1.18 7.93 -52.49 -0.42 0.76 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -31.64 365.27 -9.96 -41.60 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.74 Total: 0.81 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -7.57 Total: -15.21 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 1.48 Total: -46.76 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.64 -9.96 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599039608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.255 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds