Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00076 * 2 1 4 4 H 1.48499 * 109.47322 * 270.00099 * 3 2 1 5 5 H 1.48504 * 109.46960 * 30.00137 * 3 2 1 6 6 H 1.48502 * 109.47272 * 150.00033 * 3 2 1 7 7 C 1.37878 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00258 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99881 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47002 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47172 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47151 * 179.97438 * 11 10 9 13 13 C 1.39094 * 119.99711 * 180.02562 * 12 11 10 14 14 C 1.40851 * 119.60624 * 0.02562 * 13 12 11 15 15 C 1.35962 * 120.11076 * 180.02562 * 14 13 12 16 16 C 1.40737 * 119.16220 * 0.02562 * 15 14 13 17 17 N 1.32516 * 133.64141 * 179.97438 * 16 15 14 18 18 N 1.28705 * 109.60343 * 180.02562 * 17 16 15 19 19 C 1.32032 * 110.06916 * 0.02562 * 18 17 16 20 20 C 1.47785 * 126.34334 * 179.97438 * 19 18 17 21 21 C 1.39618 * 120.11944 * 194.74588 * 20 19 18 22 22 C 1.37916 * 119.87225 * 180.29621 * 21 20 19 23 23 C 1.38578 * 120.12597 * 359.96027 * 22 21 20 24 24 F 1.35100 * 119.87764 * 180.02562 * 23 22 21 25 25 C 1.38584 * 120.24468 * 0.04406 * 23 22 21 26 26 C 1.37912 * 120.12405 * 359.97438 * 25 23 22 27 27 N 1.36335 * 107.31111 * 0.24134 * 19 18 17 28 28 N 1.31279 * 119.60627 * 180.02562 * 13 12 11 29 29 H 0.97003 * 119.99646 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47298 * 60.00053 * 9 7 2 31 31 H 1.09001 * 109.47479 * 300.00064 * 9 7 2 32 32 H 1.09003 * 109.47573 * 60.00328 * 10 9 7 33 33 H 1.09000 * 109.47339 * 299.99591 * 10 9 7 34 34 H 1.09003 * 109.46552 * 59.99766 * 11 10 9 35 35 H 1.09005 * 109.47044 * 300.00389 * 11 10 9 36 36 H 0.96997 * 120.00319 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.94773 * 0.02562 * 14 13 12 38 38 H 1.08004 * 120.42265 * 180.02562 * 15 14 13 39 39 H 1.07995 * 120.06297 * 0.25516 * 21 20 19 40 40 H 1.08000 * 119.93723 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.93945 * 179.97438 * 25 23 22 42 42 H 1.08000 * 120.06781 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 6 5.5515 -2.6367 -0.0035 12 7 6.0398 -4.0179 -0.0040 13 6 7.4073 -4.2721 -0.0046 14 6 8.3152 -3.1952 -0.0042 15 6 9.6540 -3.4319 -0.0053 16 6 10.1154 -4.7614 -0.0074 17 7 11.3213 -5.3110 -0.0093 18 7 11.2113 -6.5934 -0.0113 19 6 9.9370 -6.9389 -0.0114 20 6 9.4032 -8.3170 -0.0139 21 6 8.0610 -8.5478 -0.3212 22 6 7.5667 -9.8353 -0.3161 23 6 8.3998 -10.8989 -0.0076 24 9 7.9105 -12.1582 -0.0046 25 6 9.7329 -10.6756 0.2982 26 6 10.2378 -9.3922 0.2965 27 7 9.2049 -5.7888 -0.0147 28 7 7.8364 -5.5127 -0.0056 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6805 0.8888 31 1 3.8746 -0.6801 -0.8911 32 1 3.6578 -3.1499 -0.8925 33 1 3.6585 -3.1510 0.8875 34 1 5.9155 -2.1233 0.8865 35 1 5.9141 -2.1223 -0.8935 36 1 5.4094 -4.7552 -0.0039 37 1 7.9473 -2.1798 -0.0030 38 1 10.3547 -2.6099 -0.0045 39 1 7.4109 -7.7197 -0.5617 40 1 6.5285 -10.0151 -0.5532 41 1 10.3777 -11.5081 0.5383 42 1 11.2769 -9.2192 0.5345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599039608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 100.758966 kcal Electronic energy + Delta-G solvation = -27179.122687 eV Core-core repulsion = 23075.412026 eV Total energy + Delta-G solvation = -4103.710662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.99243 -44.30457 -40.36883 -39.89806 -37.50871 -35.51413 -35.01238 -33.77005 -32.77084 -32.28725 -31.70578 -29.90514 -28.60332 -25.88691 -25.16734 -24.57335 -24.16980 -23.27609 -22.20942 -22.00435 -19.76424 -19.22611 -18.87158 -18.68269 -18.07272 -17.78685 -17.22874 -16.94694 -16.66409 -16.42042 -16.37163 -15.72482 -15.35186 -14.89328 -14.87209 -14.80134 -14.67576 -14.54576 -14.24686 -13.85114 -13.76276 -13.68982 -13.60773 -13.22918 -12.78277 -12.70006 -12.39440 -12.17322 -12.02493 -11.90335 -11.74348 -11.69834 -11.41890 -11.34759 -11.28297 -10.72753 -10.42599 -10.23065 -9.47838 -9.14365 -8.25718 -6.30701 -0.71139 -0.49660 0.15738 0.38969 0.48586 1.41989 1.44063 1.47379 1.54894 2.01832 2.08396 2.40359 2.54519 2.73674 3.08516 3.10905 3.13614 3.26833 3.42655 3.65511 3.83143 3.93684 4.01643 4.06539 4.16309 4.24597 4.41253 4.54581 4.56644 4.61562 4.66069 4.80524 4.86214 4.88728 4.93375 5.01164 5.05017 5.06284 5.14734 5.31965 5.49835 5.61773 5.62815 5.71057 5.73131 6.23554 6.30707 6.64859 6.79593 7.18802 7.34334 8.91037 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.002085 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.870295 B =13424.847743 C =15369.195305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.004 4.004 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.232 1.232 7 C -0.533 4.533 8 H 0.028 0.972 9 C -0.010 4.010 10 C -0.106 4.106 11 C 0.126 3.874 12 N -0.686 5.686 13 C 0.417 3.583 14 C -0.161 4.161 15 C 0.007 3.993 16 C 0.121 3.879 17 N -0.280 5.280 18 N -0.271 5.271 19 C 0.228 3.772 20 C -0.046 4.046 21 C -0.065 4.065 22 C -0.153 4.153 23 C 0.105 3.895 24 F -0.139 7.139 25 C -0.146 4.146 26 C -0.048 4.048 27 N -0.273 5.273 28 N -0.374 5.374 29 H 0.264 0.736 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.414 0.586 37 H 0.197 0.803 38 H 0.207 0.793 39 H 0.142 0.858 40 H 0.157 0.843 41 H 0.169 0.831 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.306 -13.545 0.123 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.200 4.200 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.220 1.220 6 H -0.154 1.154 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.321 5.321 13 C 0.152 3.848 14 C -0.188 4.188 15 C -0.020 4.020 16 C -0.135 4.135 17 N -0.129 5.129 18 N -0.117 5.117 19 C -0.035 4.035 20 C -0.049 4.049 21 C -0.085 4.085 22 C -0.172 4.172 23 C 0.085 3.915 24 F -0.118 7.118 25 C -0.165 4.165 26 C -0.068 4.068 27 N -0.047 5.047 28 N -0.207 5.207 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.251 0.749 37 H 0.214 0.786 38 H 0.224 0.776 39 H 0.159 0.841 40 H 0.175 0.825 41 H 0.187 0.813 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 23.289 -14.290 0.120 27.324 hybrid contribution -1.921 0.922 -0.055 2.131 sum 21.368 -13.369 0.064 25.206 Atomic orbital electron populations 1.70096 1.08657 1.28108 1.52876 1.26135 0.95620 1.03987 0.94265 0.85615 0.79898 0.77672 0.79171 1.19285 1.22039 1.15443 1.21540 0.92627 0.92842 1.50140 0.95333 1.19458 0.93365 0.94341 0.97621 1.21479 0.92832 0.98273 1.01834 1.21818 0.94248 0.79823 1.03753 1.44730 1.00462 1.10159 1.76725 1.19593 0.87958 0.89797 0.87475 1.21853 0.91731 1.01666 1.03593 1.20858 0.96576 0.91780 0.92800 1.23028 0.87521 0.93463 1.09486 1.74815 1.18070 1.00353 1.19671 1.74749 1.12688 1.05712 1.18521 1.22669 0.86184 0.87307 1.07304 1.17638 0.94615 0.86676 1.05944 1.21308 0.93795 0.97491 0.95919 1.21224 1.01710 0.90973 1.03252 1.18048 0.93229 0.79148 1.01032 1.91516 1.88353 1.38011 1.93912 1.21305 0.93926 0.98542 1.02706 1.21174 1.00511 0.89992 0.95100 1.47179 1.04355 1.06811 1.46328 1.75450 0.88741 1.18869 1.37662 0.92721 0.95048 0.95183 0.92408 0.92452 0.89306 0.89190 0.74882 0.78583 0.77633 0.84061 0.82524 0.81322 0.82750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.71 13.96 21.45 0.30 -57.41 16 2 C 0.00 -0.21 5.47 84.65 0.46 0.25 16 3 Si 0.95 40.10 27.47 68.60 1.88 41.98 16 4 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.23 -8.42 6.54 99.48 0.65 -7.77 16 7 C -0.53 -27.91 9.66 25.60 0.25 -27.66 16 8 H 0.03 1.68 7.99 -2.91 -0.02 1.65 16 9 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 10 C -0.11 -2.98 5.27 30.60 0.16 -2.82 16 11 C 0.13 2.24 4.89 86.38 0.42 2.67 16 12 N -0.69 -12.04 5.73 -344.29 -1.97 -14.01 16 13 C 0.42 7.91 7.75 133.79 1.04 8.95 16 14 C -0.16 -2.20 9.26 22.38 0.21 -1.99 16 15 C 0.01 0.10 10.11 22.35 0.23 0.33 16 16 C 0.12 2.94 7.99 134.00 1.07 4.01 16 17 N -0.28 -7.96 12.31 -55.37 -0.68 -8.64 16 18 N -0.27 -7.83 11.99 -51.19 -0.61 -8.45 16 19 C 0.23 6.11 7.81 136.37 1.07 7.18 16 20 C -0.05 -1.03 5.87 -20.09 -0.12 -1.15 16 21 C -0.07 -1.34 9.60 22.53 0.22 -1.12 16 22 C -0.15 -2.66 10.01 22.27 0.22 -2.43 16 23 C 0.11 1.80 7.30 22.43 0.16 1.96 16 24 F -0.14 -2.50 17.26 44.97 0.78 -1.72 16 25 C -0.15 -2.16 10.01 22.27 0.22 -1.94 16 26 C -0.05 -0.85 9.70 22.52 0.22 -0.63 16 27 N -0.27 -7.13 4.05 -185.48 -0.75 -7.88 16 28 N -0.37 -8.81 10.10 -54.82 -0.55 -9.36 16 29 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.03 1.12 7.20 -2.39 -0.02 1.11 16 31 H 0.03 1.06 7.57 -2.39 -0.02 1.04 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 1.32 7.92 -2.39 -0.02 1.30 16 35 H 0.09 1.32 7.93 -2.38 -0.02 1.30 16 36 H 0.41 7.30 8.59 -92.71 -0.80 6.50 16 37 H 0.20 1.32 6.69 -2.91 -0.02 1.30 16 38 H 0.21 1.48 8.06 -2.91 -0.02 1.45 16 39 H 0.14 3.06 6.32 -2.91 -0.02 3.04 16 40 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.15 2.43 7.93 -2.91 -0.02 2.40 16 Total: -1.00 -72.24 365.27 4.56 -67.68 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.23 Total: 12.47 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 5.95 Total: -14.65 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -4.27 Total: -105.76 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.88 Total: 41.98 kcal Total: -72.24 4.56 -67.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599039608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.437 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds