Wall clock time and date at job start Sat Apr 11 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47192 * 2 1 4 4 C 1.50697 * 109.47224 * 240.00397 * 2 1 3 5 5 H 1.08003 * 119.99997 * 240.00183 * 4 2 1 6 6 C 1.37878 * 120.00193 * 59.99854 * 4 2 1 7 7 N 1.31516 * 119.99598 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00174 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47014 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.46904 * 300.00122 * 8 6 4 11 11 H 1.48499 * 109.46924 * 59.99909 * 8 6 4 12 12 N 1.46896 * 109.47186 * 119.99922 * 2 1 3 13 13 C 1.46900 * 111.00233 * 274.99940 * 12 2 1 14 14 C 1.50707 * 109.47113 * 179.97438 * 13 12 2 15 15 O 1.21286 * 119.99910 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99830 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99673 * 180.02562 * 16 14 13 18 18 C 1.50708 * 109.47082 * 180.02562 * 17 16 14 19 19 O 1.21289 * 119.99630 * 0.02562 * 18 17 16 20 20 N 1.34768 * 119.99683 * 179.97438 * 18 17 16 21 21 C 1.40028 * 119.99587 * 175.38035 * 20 18 17 22 22 C 1.38868 * 120.03905 * 35.08669 * 21 20 18 23 23 C 1.38121 * 120.00588 * 180.02562 * 22 21 20 24 24 C 1.38433 * 120.06675 * 0.02562 * 23 22 21 25 25 F 1.35094 * 119.96672 * 179.97438 * 24 23 22 26 26 C 1.38675 * 120.07013 * 359.97438 * 24 23 22 27 27 F 1.35093 * 119.99999 * 180.02562 * 26 24 23 28 28 C 1.38329 * 119.99862 * 359.72567 * 26 24 23 29 29 H 1.09000 * 109.47394 * 299.99879 * 1 2 3 30 30 H 1.08996 * 109.47240 * 59.99765 * 1 2 3 31 31 H 1.09007 * 109.47192 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99492 * 180.02562 * 7 6 4 33 33 H 1.00898 * 111.00060 * 38.95532 * 12 2 1 34 34 H 1.08991 * 109.47682 * 300.00074 * 13 12 2 35 35 H 1.09003 * 109.46785 * 60.00588 * 13 12 2 36 36 H 0.97003 * 120.00375 * 0.02562 * 16 14 13 37 37 H 1.09003 * 109.47236 * 300.00220 * 17 16 14 38 38 H 1.08999 * 109.47591 * 60.00144 * 17 16 14 39 39 H 0.96996 * 120.00627 * 355.38138 * 20 18 17 40 40 H 1.08011 * 119.99648 * 0.02673 * 22 21 20 41 41 H 1.07996 * 119.97120 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.03483 * 180.27207 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8304 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.8259 -0.4203 -5.2205 10 1 3.8063 -1.1207 -4.0082 11 1 1.8258 -2.5200 -4.0078 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5874 -0.5219 3.5560 15 8 2.8677 -1.6988 3.4702 16 7 2.7283 0.1204 4.7325 17 6 3.2196 -0.6032 5.9077 18 6 3.2840 0.3355 7.0850 19 8 2.9516 1.4947 6.9551 20 7 3.7098 -0.1134 8.2822 21 6 3.8619 0.7788 9.3507 22 6 2.9857 1.8465 9.4949 23 6 3.1367 2.7264 10.5488 24 6 4.1613 2.5456 11.4619 25 9 4.3074 3.4078 12.4917 26 6 5.0380 1.4804 11.3208 27 9 6.0371 1.3051 12.2130 28 6 4.8856 0.5939 10.2699 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.7089 1.1616 -3.4843 33 1 1.4495 -1.4979 1.4100 34 1 2.7588 1.0462 2.1183 35 1 1.0870 0.6162 2.5526 36 1 2.5044 1.0617 4.8011 37 1 2.5430 -1.4266 6.1366 38 1 4.2149 -0.9973 5.7020 39 1 3.9110 -1.0544 8.4038 40 1 2.1861 1.9888 8.7829 41 1 2.4552 3.5568 10.6602 42 1 5.5653 -0.2383 10.1619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:35 Heat of formation + Delta-G solvation = -121.950787 kcal Electronic energy + Delta-G solvation = -27620.099991 eV Core-core repulsion = 23043.669933 eV Total energy + Delta-G solvation = -4576.430057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.93374 -49.00280 -41.30188 -39.58507 -38.71201 -35.80043 -35.39213 -34.48887 -32.49354 -31.48715 -30.51040 -29.36113 -27.79973 -25.26300 -24.72687 -24.02311 -23.27640 -21.24414 -20.50681 -20.19016 -19.10650 -18.22002 -18.16279 -17.42272 -16.85103 -16.65059 -16.60176 -16.30014 -15.89703 -15.73082 -15.41346 -15.21293 -14.96328 -14.68704 -14.58272 -14.27868 -13.98838 -13.65313 -13.45075 -13.38242 -13.25945 -12.84275 -12.61225 -12.47604 -11.95960 -11.66500 -11.55618 -10.94862 -10.91447 -10.82018 -10.59280 -10.54804 -10.15770 -9.99897 -9.65346 -9.62933 -9.26070 -9.01217 -8.78434 -8.35510 -7.28311 -5.98420 -4.01115 0.26383 0.39524 1.80421 2.06933 2.80379 2.83071 3.14871 3.30473 3.36719 3.39920 3.44423 3.79175 3.87966 4.04102 4.35482 4.42764 4.45663 4.70799 4.86691 4.90452 5.10781 5.17648 5.23732 5.32940 5.35116 5.44356 5.53010 5.66981 5.81803 5.86702 6.17691 6.20506 6.57981 6.64000 6.80922 7.03988 7.24355 7.31257 7.48112 7.72297 7.87964 8.23217 8.33219 8.50461 8.58657 9.06265 9.64057 11.08780 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.032962 B = 0.001512 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.264368 B =18515.303051 C =18876.121677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.035 0.965 4 C -0.494 4.494 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.900 3.100 9 H -0.289 1.289 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.667 5.667 13 C 0.045 3.955 14 C 0.518 3.482 15 O -0.524 6.524 16 N -0.731 5.731 17 C 0.105 3.895 18 C 0.515 3.485 19 O -0.510 6.510 20 N -0.670 5.670 21 C 0.167 3.833 22 C -0.102 4.102 23 C -0.104 4.104 24 C 0.052 3.948 25 F -0.128 7.128 26 C 0.088 3.912 27 F -0.125 7.125 28 C -0.153 4.153 29 H 0.005 0.995 30 H 0.091 0.909 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.335 0.665 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.411 0.589 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.419 0.581 40 H 0.158 0.842 41 H 0.152 0.848 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.304 1.368 30.104 30.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.215 1.215 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.299 5.299 13 C -0.088 4.088 14 C 0.305 3.695 15 O -0.398 6.398 16 N -0.390 5.390 17 C -0.022 4.022 18 C 0.303 3.697 19 O -0.384 6.384 20 N -0.316 5.316 21 C 0.072 3.928 22 C -0.122 4.122 23 C -0.124 4.124 24 C 0.032 3.968 25 F -0.107 7.107 26 C 0.067 3.933 27 F -0.104 7.104 28 C -0.175 4.175 29 H 0.024 0.976 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.249 0.751 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.257 0.743 40 H 0.176 0.824 41 H 0.170 0.830 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.901 1.530 29.596 30.038 hybrid contribution -0.360 -0.175 -0.043 0.402 sum 4.542 1.355 29.552 29.930 Atomic orbital electron populations 1.22457 1.00573 0.99402 1.00555 1.19237 0.89682 0.94483 0.86211 0.94665 1.21104 1.30266 1.12525 0.89405 0.91806 1.24947 0.95338 0.95227 0.99051 1.69870 1.37316 1.23180 1.23483 0.86530 0.79190 0.79603 0.81873 1.21501 1.20279 1.20348 1.60592 1.59057 1.08341 1.01915 1.21787 1.00170 0.96918 0.89928 1.21157 0.76966 0.87795 0.83537 1.90689 1.48666 1.16107 1.84301 1.45830 1.69575 1.15129 1.08488 1.20943 1.03146 0.94128 0.84019 1.20953 0.75872 0.89200 0.83722 1.90731 1.45789 1.18259 1.83582 1.43405 1.67257 1.11857 1.09067 1.17407 0.94055 0.92782 0.88522 1.21299 0.99343 0.93917 0.97628 1.21045 0.97131 1.00927 0.93250 1.17711 0.98769 0.90853 0.89514 1.91539 1.95330 1.67831 1.56001 1.17281 0.88637 0.96452 0.90911 1.91553 1.57980 1.94958 1.65868 1.20737 0.99350 1.01898 0.95480 0.97645 0.89071 0.95162 0.93011 0.84692 0.88500 0.93177 0.75147 0.87940 0.87816 0.74329 0.82435 0.83037 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 8.94 37.15 0.33 -3.66 16 2 C 0.21 5.22 2.57 -68.87 -0.18 5.04 16 3 H 0.04 0.93 7.80 -51.93 -0.40 0.53 16 4 C -0.49 -13.69 8.84 -34.44 -0.30 -13.99 16 5 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.40 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 N -0.67 -14.31 5.86 -109.22 -0.64 -14.94 16 13 C 0.04 0.75 5.97 -4.97 -0.03 0.72 16 14 C 0.52 7.84 7.87 -10.98 -0.09 7.76 16 15 O -0.52 -9.65 16.20 5.55 0.09 -9.56 16 16 N -0.73 -8.01 5.53 -61.47 -0.34 -8.35 16 17 C 0.11 0.82 6.16 -5.19 -0.03 0.79 16 18 C 0.51 3.73 7.74 -10.99 -0.09 3.64 16 19 O -0.51 -5.17 13.10 5.55 0.07 -5.09 16 20 N -0.67 -3.14 5.34 -9.85 -0.05 -3.20 16 21 C 0.17 1.03 6.30 -83.67 -0.53 0.50 16 22 C -0.10 -0.70 8.69 -39.39 -0.34 -1.04 16 23 C -0.10 -0.68 10.02 -39.55 -0.40 -1.07 16 24 C 0.05 0.41 7.30 -39.35 -0.29 0.12 16 25 F -0.13 -1.17 17.18 2.25 0.04 -1.13 16 26 C 0.09 0.66 7.30 -39.39 -0.29 0.38 16 27 F -0.13 -1.09 17.18 2.25 0.04 -1.05 16 28 C -0.15 -0.87 9.94 -39.33 -0.39 -1.26 16 29 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 30 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 31 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.34 7.15 8.17 -39.29 -0.32 6.83 16 34 H 0.10 1.57 8.05 -51.93 -0.42 1.15 16 35 H 0.05 0.78 7.44 -51.93 -0.39 0.39 16 36 H 0.41 4.17 7.44 -40.82 -0.30 3.86 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.42 0.61 8.82 -40.82 -0.36 0.25 16 40 H 0.16 1.18 6.22 -52.48 -0.33 0.85 16 41 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -33.38 369.63 -7.21 -40.59 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.88 Total: 6.07 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.71 Total: -0.66 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.40 Total: -51.26 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.16 Total: -14.65 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.08 Total: -2.18 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.38 -7.21 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.364 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds