Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47192 * 2 1 4 4 C 1.50697 * 109.47224 * 240.00397 * 2 1 3 5 5 H 1.08003 * 119.99997 * 240.00183 * 4 2 1 6 6 C 1.37878 * 120.00193 * 59.99854 * 4 2 1 7 7 N 1.31516 * 119.99598 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00174 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47014 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.46904 * 300.00122 * 8 6 4 11 11 H 1.48499 * 109.46924 * 59.99909 * 8 6 4 12 12 N 1.46896 * 109.47186 * 119.99922 * 2 1 3 13 13 C 1.46900 * 111.00233 * 274.99940 * 12 2 1 14 14 C 1.50707 * 109.47113 * 179.97438 * 13 12 2 15 15 O 1.21286 * 119.99910 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99830 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99673 * 180.02562 * 16 14 13 18 18 C 1.50708 * 109.47082 * 180.02562 * 17 16 14 19 19 O 1.21289 * 119.99630 * 0.02562 * 18 17 16 20 20 N 1.34768 * 119.99683 * 179.97438 * 18 17 16 21 21 C 1.40028 * 119.99587 * 175.38035 * 20 18 17 22 22 C 1.38868 * 120.03905 * 35.08669 * 21 20 18 23 23 C 1.38121 * 120.00588 * 180.02562 * 22 21 20 24 24 C 1.38433 * 120.06675 * 0.02562 * 23 22 21 25 25 F 1.35094 * 119.96672 * 179.97438 * 24 23 22 26 26 C 1.38675 * 120.07013 * 359.97438 * 24 23 22 27 27 F 1.35093 * 119.99999 * 180.02562 * 26 24 23 28 28 C 1.38329 * 119.99862 * 359.72567 * 26 24 23 29 29 H 1.09000 * 109.47394 * 299.99879 * 1 2 3 30 30 H 1.08996 * 109.47240 * 59.99765 * 1 2 3 31 31 H 1.09007 * 109.47192 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99492 * 180.02562 * 7 6 4 33 33 H 1.00898 * 111.00060 * 38.95532 * 12 2 1 34 34 H 1.08991 * 109.47682 * 300.00074 * 13 12 2 35 35 H 1.09003 * 109.46785 * 60.00588 * 13 12 2 36 36 H 0.97003 * 120.00375 * 0.02562 * 16 14 13 37 37 H 1.09003 * 109.47236 * 300.00220 * 17 16 14 38 38 H 1.08999 * 109.47591 * 60.00144 * 17 16 14 39 39 H 0.96996 * 120.00627 * 355.38138 * 20 18 17 40 40 H 1.08011 * 119.99648 * 0.02673 * 22 21 20 41 41 H 1.07996 * 119.97120 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.03483 * 180.27207 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8304 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.8259 -0.4203 -5.2205 10 1 3.8063 -1.1207 -4.0082 11 1 1.8258 -2.5200 -4.0078 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5874 -0.5219 3.5560 15 8 2.8677 -1.6988 3.4702 16 7 2.7283 0.1204 4.7325 17 6 3.2196 -0.6032 5.9077 18 6 3.2840 0.3355 7.0850 19 8 2.9516 1.4947 6.9551 20 7 3.7098 -0.1134 8.2822 21 6 3.8619 0.7788 9.3507 22 6 2.9857 1.8465 9.4949 23 6 3.1367 2.7264 10.5488 24 6 4.1613 2.5456 11.4619 25 9 4.3074 3.4078 12.4917 26 6 5.0380 1.4804 11.3208 27 9 6.0371 1.3051 12.2130 28 6 4.8856 0.5939 10.2699 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.7089 1.1616 -3.4843 33 1 1.4495 -1.4979 1.4100 34 1 2.7588 1.0462 2.1183 35 1 1.0870 0.6162 2.5526 36 1 2.5044 1.0617 4.8011 37 1 2.5430 -1.4266 6.1366 38 1 4.2149 -0.9973 5.7020 39 1 3.9110 -1.0544 8.4038 40 1 2.1861 1.9888 8.7829 41 1 2.4552 3.5568 10.6602 42 1 5.5653 -0.2383 10.1619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -146.625620 kcal Electronic energy + Delta-G solvation = -27621.169972 eV Core-core repulsion = 23043.669933 eV Total energy + Delta-G solvation = -4577.500038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.54842 -49.62783 -41.89652 -40.63682 -39.40238 -37.52585 -35.96167 -35.48046 -34.43336 -31.99335 -31.45928 -30.66467 -28.78589 -27.22242 -26.15283 -24.53835 -23.91954 -22.14837 -21.80423 -21.54315 -19.69610 -19.10072 -18.74944 -18.37047 -17.90278 -17.45362 -17.43573 -17.17544 -17.09089 -16.60843 -16.51812 -16.25895 -16.04890 -15.61662 -15.45136 -15.18002 -15.06633 -14.70078 -14.59882 -14.20886 -14.12550 -14.00436 -13.72972 -13.51755 -13.34922 -13.12022 -12.83012 -12.70335 -12.47671 -12.38857 -12.12962 -11.92824 -11.50154 -11.19414 -11.18092 -10.81640 -10.45134 -10.21708 -10.13092 -9.32168 -8.96588 -8.07600 -6.17614 -0.28044 -0.10485 1.23431 1.45586 1.47147 1.47318 1.55233 1.63710 2.23646 2.32104 2.47834 2.77396 3.20978 3.22953 3.36152 3.54549 3.73208 3.84645 3.92663 3.97267 4.22535 4.29923 4.38376 4.48420 4.51316 4.64761 4.75495 4.78146 4.92354 4.96385 5.00833 5.10071 5.13874 5.27841 5.40503 5.67456 5.72364 5.83256 6.14669 6.26948 6.42693 6.64620 6.78842 6.82789 6.94969 7.22965 7.51746 8.97555 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.032962 B = 0.001512 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.264368 B =18515.303051 C =18876.121677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.014 0.986 4 C -0.517 4.517 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.283 1.283 10 H -0.275 1.275 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.042 3.958 14 C 0.527 3.473 15 O -0.560 6.560 16 N -0.717 5.717 17 C 0.103 3.897 18 C 0.523 3.477 19 O -0.540 6.540 20 N -0.651 5.651 21 C 0.165 3.835 22 C -0.108 4.108 23 C -0.101 4.101 24 C 0.036 3.964 25 F -0.140 7.140 26 C 0.074 3.926 27 F -0.135 7.135 28 C -0.140 4.140 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.335 0.665 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.417 0.583 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.437 0.563 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.600 0.600 30.889 31.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.032 0.968 4 C -0.556 4.556 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.208 1.208 10 H -0.201 1.201 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.091 4.091 14 C 0.314 3.686 15 O -0.437 6.437 16 N -0.374 5.374 17 C -0.023 4.023 18 C 0.311 3.689 19 O -0.416 6.416 20 N -0.299 5.299 21 C 0.069 3.931 22 C -0.128 4.128 23 C -0.120 4.120 24 C 0.015 3.985 25 F -0.119 7.119 26 C 0.053 3.947 27 F -0.113 7.113 28 C -0.161 4.161 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.152 0.848 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.255 0.745 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.278 0.722 40 H 0.171 0.829 41 H 0.184 0.816 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.210 0.759 30.444 30.896 hybrid contribution -0.447 0.100 -0.191 0.496 sum 4.763 0.858 30.253 30.638 Atomic orbital electron populations 1.22256 0.99661 0.99292 1.00515 1.19007 0.90281 0.93080 0.86922 0.96845 1.21399 1.30516 1.12492 0.91153 0.93131 1.25662 0.95496 0.95914 1.01683 1.69982 1.37867 1.24047 1.24053 0.85600 0.78595 0.78662 0.78650 1.20845 1.20079 1.19889 1.60397 1.58870 1.09005 1.02701 1.21832 1.01464 0.96395 0.89404 1.20670 0.76814 0.87056 0.84108 1.90680 1.50658 1.17404 1.84971 1.45610 1.68096 1.15383 1.08287 1.21145 1.04142 0.94220 0.82826 1.20782 0.75539 0.88488 0.84111 1.90736 1.47391 1.19445 1.84070 1.43192 1.66162 1.12641 1.07868 1.17461 0.94024 0.92794 0.88783 1.21353 0.99548 0.94358 0.97586 1.21176 0.96897 1.01250 0.92683 1.17948 0.99624 0.91173 0.89768 1.91504 1.95481 1.68296 1.56610 1.17501 0.88642 0.97041 0.91478 1.91527 1.58409 1.95057 1.66335 1.20899 0.99136 1.01870 0.94148 0.94920 0.91736 0.95198 0.92959 0.84756 0.88138 0.91407 0.74471 0.86154 0.86613 0.72212 0.82912 0.81561 0.80467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.34 8.94 71.98 0.64 -6.70 16 2 C 0.22 10.69 2.57 44.17 0.11 10.81 16 3 H 0.01 0.73 7.80 -2.38 -0.02 0.71 16 4 C -0.52 -28.88 8.84 25.60 0.23 -28.65 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -52.20 11.32 21.45 0.24 -51.96 16 8 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 N -0.68 -28.89 5.86 -499.47 -2.93 -31.82 16 13 C 0.04 1.35 5.97 85.56 0.51 1.86 16 14 C 0.53 15.14 7.87 87.66 0.69 15.83 16 15 O -0.56 -19.94 16.20 -3.05 -0.05 -19.99 16 16 N -0.72 -14.20 5.53 -466.77 -2.58 -16.78 16 17 C 0.10 1.33 6.16 85.64 0.53 1.85 16 18 C 0.52 6.27 7.74 87.66 0.68 6.95 16 19 O -0.54 -9.97 13.10 -3.06 -0.04 -10.01 16 20 N -0.65 -4.27 5.34 -303.47 -1.62 -5.89 16 21 C 0.16 1.67 6.30 38.12 0.24 1.91 16 22 C -0.11 -1.35 8.69 22.39 0.19 -1.15 16 23 C -0.10 -1.22 10.02 22.29 0.22 -1.00 16 24 C 0.04 0.54 7.30 22.42 0.16 0.70 16 25 F -0.14 -2.56 17.18 44.97 0.77 -1.78 16 26 C 0.07 1.04 7.30 22.40 0.16 1.21 16 27 F -0.13 -2.25 17.18 44.97 0.77 -1.48 16 28 C -0.14 -1.27 9.94 22.43 0.22 -1.05 16 29 H 0.03 1.29 7.45 -2.39 -0.02 1.27 16 30 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 31 H 0.03 1.34 8.13 -2.38 -0.02 1.32 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.33 14.18 8.17 -89.70 -0.73 13.45 16 34 H 0.10 3.17 8.05 -2.39 -0.02 3.15 16 35 H 0.07 1.97 7.44 -2.39 -0.02 1.95 16 36 H 0.42 7.61 7.44 -92.71 -0.69 6.92 16 37 H 0.12 1.21 8.14 -2.39 -0.02 1.20 16 38 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.44 -0.25 8.82 -92.71 -0.82 -1.07 16 40 H 0.15 2.11 6.22 -2.90 -0.02 2.09 16 41 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 42 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -71.98 369.63 0.52 -71.46 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -1.12 Total: 18.48 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.05 Total: 3.62 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -6.88 Total: -106.45 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.09 Total: -30.00 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 1.54 Total: -3.26 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -71.98 0.52 -71.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.168 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds