Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46632 * 2 1 4 4 C 1.50704 * 109.47003 * 119.99404 * 2 1 3 5 5 H 1.07997 * 120.00155 * 114.79061 * 4 2 1 6 6 C 1.37882 * 119.99726 * 294.78619 * 4 2 1 7 7 N 1.31506 * 120.00458 * 359.12472 * 6 4 2 8 8 Si 1.86807 * 119.99532 * 179.39572 * 6 4 2 9 9 H 1.48497 * 109.46944 * 264.74132 * 8 6 4 10 10 H 1.48495 * 109.47180 * 24.74171 * 8 6 4 11 11 H 1.48495 * 109.46906 * 144.74202 * 8 6 4 12 12 N 1.46889 * 109.47525 * 239.99672 * 2 1 3 13 13 C 1.46898 * 111.00178 * 85.00067 * 12 2 1 14 14 C 1.50702 * 109.47208 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00075 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00036 * 179.97438 * 14 13 12 17 17 C 1.46493 * 120.00231 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.47374 * 180.02562 * 17 16 14 19 19 O 1.21289 * 120.00075 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00226 * 180.02562 * 18 17 16 21 21 C 1.40013 * 120.00093 * 185.01179 * 20 18 17 22 22 C 1.38874 * 120.03605 * 34.04272 * 21 20 18 23 23 C 1.38125 * 119.99917 * 180.02562 * 22 21 20 24 24 C 1.38429 * 120.07081 * 359.97438 * 23 22 21 25 25 F 1.35100 * 119.96121 * 179.97438 * 24 23 22 26 26 C 1.38672 * 120.06959 * 359.97438 * 24 23 22 27 27 F 1.35103 * 119.99881 * 180.02562 * 26 24 23 28 28 C 1.38315 * 120.00064 * 359.72531 * 26 24 23 29 29 H 1.08999 * 109.46608 * 176.98632 * 1 2 3 30 30 H 1.08995 * 109.47637 * 296.98888 * 1 2 3 31 31 H 1.08998 * 109.46845 * 56.99336 * 1 2 3 32 32 H 0.97001 * 120.00308 * 180.27440 * 7 6 4 33 33 H 1.00904 * 111.00020 * 321.04255 * 12 2 1 34 34 H 1.09011 * 109.47022 * 299.99563 * 13 12 2 35 35 H 1.08992 * 109.47524 * 59.99607 * 13 12 2 36 36 H 0.97002 * 119.99542 * 0.02562 * 16 14 13 37 37 H 1.08996 * 109.47212 * 300.00559 * 17 16 14 38 38 H 1.09004 * 109.47250 * 60.00326 * 17 16 14 39 39 H 0.97008 * 119.99541 * 5.01243 * 20 18 17 40 40 H 1.08000 * 119.99737 * 0.02562 * 22 21 20 41 41 H 1.08004 * 119.96344 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.03575 * 180.27673 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.5821 -1.6348 1.1339 6 6 1.7901 -0.1797 2.4799 7 7 1.1358 0.9550 2.5969 8 14 2.3981 -1.0689 4.0061 9 1 1.3087 -1.9180 4.5513 10 1 3.5606 -1.9223 3.6517 11 1 2.8084 -0.0732 5.0286 12 7 2.0197 -0.6925 -1.1993 13 6 2.0826 0.2225 -2.3468 14 6 2.5876 -0.5220 -3.5558 15 8 2.8671 -1.6990 -3.4702 16 7 2.7276 0.1200 -4.7326 17 6 3.2190 -0.6036 -5.9078 18 6 3.2833 0.3351 -7.0851 19 8 2.9518 1.4945 -6.9551 20 7 3.7093 -0.1138 -8.2824 21 6 3.8692 0.7797 -9.3485 22 6 4.2884 2.0815 -9.1075 23 6 4.4454 2.9624 -10.1598 24 6 4.1858 2.5490 -11.4551 25 9 4.3396 3.4126 -12.4826 26 6 3.7681 1.2493 -11.6992 27 9 3.5157 0.8472 -12.9640 28 6 3.6159 0.3630 -10.6483 29 1 -0.3632 -1.0263 -0.0540 30 1 -0.3634 0.4663 0.9157 31 1 -0.3633 0.5598 -0.8618 32 1 0.9688 1.3303 3.4757 33 1 1.4497 -1.4980 -1.4098 34 1 1.0871 0.6161 -2.5526 35 1 2.7588 1.0461 -2.1182 36 1 2.5036 1.0613 -4.8012 37 1 4.2145 -0.9969 -5.7023 38 1 2.5429 -1.4275 -6.1362 39 1 3.9050 -1.0559 -8.4055 40 1 4.4916 2.4051 -8.0974 41 1 4.7710 3.9749 -9.9717 42 1 3.2949 -0.6506 -10.8381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -123.625376 kcal Electronic energy + Delta-G solvation = -27614.725967 eV Core-core repulsion = 23038.223294 eV Total energy + Delta-G solvation = -4576.502673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.93509 -49.00384 -41.29724 -39.58824 -38.71842 -35.79777 -35.39132 -34.48601 -32.47383 -31.50224 -30.50522 -29.40196 -27.82672 -25.26296 -24.73258 -24.04038 -23.28047 -21.22381 -20.50885 -20.19918 -19.11243 -18.24248 -18.12415 -17.44151 -16.84282 -16.66736 -16.60495 -16.27690 -15.94082 -15.76877 -15.41515 -15.15970 -14.93846 -14.69443 -14.58575 -14.34308 -13.90850 -13.70255 -13.44924 -13.33945 -13.25147 -12.88351 -12.60462 -12.48303 -11.95726 -11.69573 -11.57103 -10.97218 -10.93806 -10.85153 -10.62270 -10.54353 -10.22939 -9.97419 -9.64887 -9.64247 -9.25982 -8.99712 -8.76911 -8.37014 -7.29448 -5.99425 -4.01072 0.25764 0.38843 1.81491 2.06118 2.80517 2.83426 3.14814 3.30045 3.34068 3.40708 3.46725 3.78907 3.86797 4.03416 4.33378 4.42111 4.45932 4.70687 4.86899 4.90313 5.10132 5.17531 5.23227 5.32143 5.35787 5.41973 5.50708 5.66428 5.81767 5.86807 6.17050 6.19970 6.57667 6.61021 6.76518 7.01396 7.22238 7.31196 7.47617 7.65422 7.87493 8.19618 8.32850 8.50685 8.58008 9.06677 9.63783 11.09108 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.034430 B = 0.001508 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.040877 B =18558.309186 C =18885.833475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.493 4.493 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.288 1.288 12 N -0.667 5.667 13 C 0.045 3.955 14 C 0.518 3.482 15 O -0.524 6.524 16 N -0.732 5.732 17 C 0.105 3.895 18 C 0.514 3.486 19 O -0.509 6.509 20 N -0.670 5.670 21 C 0.171 3.829 22 C -0.102 4.102 23 C -0.102 4.102 24 C 0.052 3.948 25 F -0.128 7.128 26 C 0.089 3.911 27 F -0.125 7.125 28 C -0.155 4.155 29 H 0.029 0.971 30 H 0.082 0.918 31 H 0.007 0.993 32 H 0.260 0.740 33 H 0.335 0.665 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.411 0.589 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.419 0.581 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.744 1.425 -29.673 30.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.103 3.897 3 H 0.058 0.942 4 C -0.532 4.532 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.214 1.214 12 N -0.299 5.299 13 C -0.088 4.088 14 C 0.306 3.694 15 O -0.398 6.398 16 N -0.390 5.390 17 C -0.023 4.023 18 C 0.302 3.698 19 O -0.382 6.382 20 N -0.317 5.317 21 C 0.076 3.924 22 C -0.122 4.122 23 C -0.121 4.121 24 C 0.031 3.969 25 F -0.107 7.107 26 C 0.068 3.932 27 F -0.104 7.104 28 C -0.176 4.176 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.249 0.751 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.257 0.743 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.310 1.587 -29.184 29.901 hybrid contribution -0.772 -0.224 -0.035 0.805 sum 5.537 1.364 -29.219 29.771 Atomic orbital electron populations 1.22423 1.00802 0.98789 1.00615 1.19257 0.89448 0.94783 0.86235 0.94240 1.21130 1.33933 1.08604 0.89529 0.91789 1.24949 0.95463 0.95096 0.99050 1.69914 1.41575 1.18753 1.23590 0.86481 0.79073 0.79316 0.82529 1.20919 1.19778 1.21379 1.60602 1.59031 1.08311 1.01915 1.21790 1.00172 0.96922 0.89912 1.21156 0.76955 0.87798 0.83539 1.90687 1.48669 1.16082 1.84319 1.45832 1.69601 1.15147 1.08457 1.20943 1.03146 0.94170 0.83996 1.20958 0.75642 0.89389 0.83829 1.90756 1.45774 1.18342 1.83350 1.43445 1.66764 1.11999 1.09447 1.17384 0.97625 0.90939 0.86478 1.21140 0.98396 0.91942 1.00702 1.21015 1.00070 1.01649 0.89413 1.17688 1.06517 0.86977 0.85751 1.91541 1.93471 1.68430 1.57249 1.17280 1.03742 0.91981 0.80149 1.91556 1.91768 1.90752 1.36283 1.20714 1.05275 1.01357 0.90255 0.95138 0.89968 0.97380 0.93074 0.84753 0.93194 0.88467 0.75150 0.87742 0.88005 0.74330 0.82913 0.83001 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 9.02 37.16 0.34 -3.54 16 2 C 0.21 5.18 2.47 -68.87 -0.17 5.01 16 3 H 0.04 1.05 7.80 -51.92 -0.40 0.64 16 4 C -0.49 -13.63 8.78 -34.44 -0.30 -13.93 16 5 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.49 11.74 55.43 0.65 -24.84 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.67 -14.25 5.86 -109.22 -0.64 -14.89 16 13 C 0.05 0.75 5.97 -4.98 -0.03 0.72 16 14 C 0.52 7.83 7.87 -10.98 -0.09 7.74 16 15 O -0.52 -9.62 16.20 5.56 0.09 -9.53 16 16 N -0.73 -8.01 5.53 -61.47 -0.34 -8.35 16 17 C 0.11 0.82 6.16 -5.20 -0.03 0.78 16 18 C 0.51 3.73 7.64 -10.98 -0.08 3.65 16 19 O -0.51 -5.23 13.39 5.55 0.07 -5.15 16 20 N -0.67 -3.16 5.34 -9.85 -0.05 -3.21 16 21 C 0.17 1.05 6.27 -83.67 -0.52 0.53 16 22 C -0.10 -0.70 8.65 -39.39 -0.34 -1.04 16 23 C -0.10 -0.66 10.02 -39.55 -0.40 -1.06 16 24 C 0.05 0.40 7.30 -39.35 -0.29 0.12 16 25 F -0.13 -1.16 17.18 2.25 0.04 -1.12 16 26 C 0.09 0.67 7.30 -39.39 -0.29 0.38 16 27 F -0.13 -1.08 17.18 2.25 0.04 -1.04 16 28 C -0.15 -0.87 9.94 -39.34 -0.39 -1.26 16 29 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.08 2.12 6.47 -51.93 -0.34 1.78 16 31 H 0.01 0.15 7.53 -51.93 -0.39 -0.24 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.33 7.10 8.14 -39.29 -0.32 6.78 16 34 H 0.05 0.77 7.49 -51.92 -0.39 0.39 16 35 H 0.10 1.57 8.05 -51.93 -0.42 1.15 16 36 H 0.41 4.17 7.44 -40.82 -0.30 3.87 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.42 0.61 8.82 -40.82 -0.36 0.25 16 40 H 0.15 1.13 6.46 -52.49 -0.34 0.79 16 41 H 0.15 0.70 8.06 -52.48 -0.42 0.27 16 42 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -33.55 370.76 -7.18 -40.73 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.92 Total: 5.80 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.69 Total: -0.47 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.38 Total: -51.29 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.16 Total: -14.69 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.08 Total: -2.16 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.55 -7.18 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.894 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds