Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46632 * 2 1 4 4 C 1.50704 * 109.47003 * 119.99404 * 2 1 3 5 5 H 1.07997 * 120.00155 * 114.79061 * 4 2 1 6 6 C 1.37882 * 119.99726 * 294.78619 * 4 2 1 7 7 N 1.31506 * 120.00458 * 359.12472 * 6 4 2 8 8 Si 1.86807 * 119.99532 * 179.39572 * 6 4 2 9 9 H 1.48497 * 109.46944 * 264.74132 * 8 6 4 10 10 H 1.48495 * 109.47180 * 24.74171 * 8 6 4 11 11 H 1.48495 * 109.46906 * 144.74202 * 8 6 4 12 12 N 1.46889 * 109.47525 * 239.99672 * 2 1 3 13 13 C 1.46898 * 111.00178 * 85.00067 * 12 2 1 14 14 C 1.50702 * 109.47208 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00075 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00036 * 179.97438 * 14 13 12 17 17 C 1.46493 * 120.00231 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.47374 * 180.02562 * 17 16 14 19 19 O 1.21289 * 120.00075 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00226 * 180.02562 * 18 17 16 21 21 C 1.40013 * 120.00093 * 185.01179 * 20 18 17 22 22 C 1.38874 * 120.03605 * 34.04272 * 21 20 18 23 23 C 1.38125 * 119.99917 * 180.02562 * 22 21 20 24 24 C 1.38429 * 120.07081 * 359.97438 * 23 22 21 25 25 F 1.35100 * 119.96121 * 179.97438 * 24 23 22 26 26 C 1.38672 * 120.06959 * 359.97438 * 24 23 22 27 27 F 1.35103 * 119.99881 * 180.02562 * 26 24 23 28 28 C 1.38315 * 120.00064 * 359.72531 * 26 24 23 29 29 H 1.08999 * 109.46608 * 176.98632 * 1 2 3 30 30 H 1.08995 * 109.47637 * 296.98888 * 1 2 3 31 31 H 1.08998 * 109.46845 * 56.99336 * 1 2 3 32 32 H 0.97001 * 120.00308 * 180.27440 * 7 6 4 33 33 H 1.00904 * 111.00020 * 321.04255 * 12 2 1 34 34 H 1.09011 * 109.47022 * 299.99563 * 13 12 2 35 35 H 1.08992 * 109.47524 * 59.99607 * 13 12 2 36 36 H 0.97002 * 119.99542 * 0.02562 * 16 14 13 37 37 H 1.08996 * 109.47212 * 300.00559 * 17 16 14 38 38 H 1.09004 * 109.47250 * 60.00326 * 17 16 14 39 39 H 0.97008 * 119.99541 * 5.01243 * 20 18 17 40 40 H 1.08000 * 119.99737 * 0.02562 * 22 21 20 41 41 H 1.08004 * 119.96344 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.03575 * 180.27673 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.5821 -1.6348 1.1339 6 6 1.7901 -0.1797 2.4799 7 7 1.1358 0.9550 2.5969 8 14 2.3981 -1.0689 4.0061 9 1 1.3087 -1.9180 4.5513 10 1 3.5606 -1.9223 3.6517 11 1 2.8084 -0.0732 5.0286 12 7 2.0197 -0.6925 -1.1993 13 6 2.0826 0.2225 -2.3468 14 6 2.5876 -0.5220 -3.5558 15 8 2.8671 -1.6990 -3.4702 16 7 2.7276 0.1200 -4.7326 17 6 3.2190 -0.6036 -5.9078 18 6 3.2833 0.3351 -7.0851 19 8 2.9518 1.4945 -6.9551 20 7 3.7093 -0.1138 -8.2824 21 6 3.8692 0.7797 -9.3485 22 6 4.2884 2.0815 -9.1075 23 6 4.4454 2.9624 -10.1598 24 6 4.1858 2.5490 -11.4551 25 9 4.3396 3.4126 -12.4826 26 6 3.7681 1.2493 -11.6992 27 9 3.5157 0.8472 -12.9640 28 6 3.6159 0.3630 -10.6483 29 1 -0.3632 -1.0263 -0.0540 30 1 -0.3634 0.4663 0.9157 31 1 -0.3633 0.5598 -0.8618 32 1 0.9688 1.3303 3.4757 33 1 1.4497 -1.4980 -1.4098 34 1 1.0871 0.6161 -2.5526 35 1 2.7588 1.0461 -2.1182 36 1 2.5036 1.0613 -4.8012 37 1 4.2145 -0.9969 -5.7023 38 1 2.5429 -1.4275 -6.1362 39 1 3.9050 -1.0559 -8.4055 40 1 4.4916 2.4051 -8.0974 41 1 4.7710 3.9749 -9.9717 42 1 3.2949 -0.6506 -10.8381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -148.497922 kcal Electronic energy + Delta-G solvation = -27615.804521 eV Core-core repulsion = 23038.223294 eV Total energy + Delta-G solvation = -4577.581227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.54713 -49.62647 -41.89394 -40.63680 -39.41123 -37.51712 -35.96371 -35.47726 -34.41897 -32.00822 -31.47608 -30.68316 -28.80448 -27.20806 -26.16448 -24.55527 -23.92385 -22.15230 -21.78596 -21.54334 -19.69997 -19.11558 -18.72641 -18.38281 -17.91822 -17.47291 -17.42327 -17.17025 -17.00764 -16.75803 -16.55476 -16.09409 -16.04617 -15.61840 -15.54211 -15.15220 -15.07426 -14.66233 -14.59136 -14.25735 -14.07759 -13.99176 -13.73986 -13.53421 -13.38388 -13.14356 -12.84034 -12.70854 -12.47231 -12.39038 -12.20303 -11.89399 -11.53595 -11.23236 -11.16897 -10.80996 -10.46672 -10.21687 -10.14073 -9.30592 -8.97307 -8.08835 -6.17656 -0.28812 -0.10845 1.24654 1.44535 1.45291 1.46510 1.57491 1.63825 2.23833 2.32276 2.47866 2.77112 3.21266 3.23019 3.35172 3.53730 3.73093 3.82832 3.92690 3.96696 4.22163 4.30256 4.38366 4.48500 4.51443 4.64260 4.74987 4.76803 4.90089 4.93571 4.98988 5.08242 5.13540 5.27911 5.38419 5.66358 5.71309 5.78362 6.14244 6.23727 6.42433 6.65301 6.79396 6.82659 6.95140 7.22972 7.51377 8.98029 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.034430 B = 0.001508 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.040877 B =18558.309186 C =18885.833475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.016 0.984 4 C -0.514 4.514 5 H 0.050 0.950 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.283 1.283 12 N -0.678 5.678 13 C 0.042 3.958 14 C 0.527 3.473 15 O -0.559 6.559 16 N -0.717 5.717 17 C 0.103 3.897 18 C 0.522 3.478 19 O -0.540 6.540 20 N -0.652 5.652 21 C 0.168 3.832 22 C -0.109 4.109 23 C -0.099 4.099 24 C 0.035 3.965 25 F -0.140 7.140 26 C 0.076 3.924 27 F -0.134 7.134 28 C -0.141 4.141 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.261 0.739 33 H 0.335 0.665 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.417 0.583 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.437 0.563 40 H 0.149 0.851 41 H 0.167 0.833 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 0.586 -30.499 31.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.106 3.894 3 H 0.034 0.966 4 C -0.553 4.553 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.209 1.209 12 N -0.309 5.309 13 C -0.091 4.091 14 C 0.314 3.686 15 O -0.437 6.437 16 N -0.374 5.374 17 C -0.023 4.023 18 C 0.311 3.689 19 O -0.416 6.416 20 N -0.299 5.299 21 C 0.072 3.928 22 C -0.129 4.129 23 C -0.118 4.118 24 C 0.014 3.986 25 F -0.119 7.119 26 C 0.055 3.945 27 F -0.113 7.113 28 C -0.162 4.162 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.152 0.848 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.255 0.745 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.278 0.722 40 H 0.166 0.834 41 H 0.185 0.815 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.511 0.743 -30.073 30.778 hybrid contribution -0.809 0.073 0.127 0.822 sum 5.701 0.815 -29.946 30.494 Atomic orbital electron populations 1.22226 0.99765 0.99083 1.00305 1.19019 0.90136 0.93282 0.86923 0.96581 1.21421 1.34171 1.08462 0.91269 0.93128 1.25662 0.95613 0.95803 1.01709 1.70016 1.42196 1.19719 1.24216 0.85541 0.78576 0.78286 0.79179 1.20234 1.19762 1.20858 1.60403 1.58870 1.08987 1.02689 1.21833 1.01446 0.96405 0.89401 1.20667 0.76805 0.87060 0.84103 1.90678 1.50655 1.17368 1.84983 1.45613 1.68129 1.15395 1.08262 1.21146 1.04190 0.94219 0.82790 1.20788 0.75275 0.88656 0.84215 1.90759 1.47469 1.19564 1.83843 1.43231 1.65650 1.12793 1.08258 1.17442 0.97481 0.90909 0.86927 1.21203 0.98675 0.92506 1.00503 1.21144 0.99535 1.02380 0.88775 1.17925 1.07503 0.87206 0.85955 1.91506 1.93694 1.68863 1.57814 1.17498 1.04443 0.92295 0.80265 1.91531 1.91955 1.90827 1.36985 1.20881 1.03844 1.02156 0.89279 0.94780 0.92749 0.94748 0.92975 0.84759 0.91458 0.88121 0.74489 0.86407 0.86313 0.72203 0.83371 0.81548 0.80437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.10 9.02 71.98 0.65 -6.45 16 2 C 0.21 10.63 2.47 44.17 0.11 10.74 16 3 H 0.02 0.87 7.80 -2.38 -0.02 0.85 16 4 C -0.51 -28.70 8.78 25.60 0.22 -28.47 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -52.55 11.74 21.45 0.25 -52.29 16 8 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 N -0.68 -28.79 5.86 -499.46 -2.92 -31.71 16 13 C 0.04 1.35 5.97 85.56 0.51 1.86 16 14 C 0.53 15.12 7.87 87.66 0.69 15.81 16 15 O -0.56 -19.88 16.20 -3.03 -0.05 -19.93 16 16 N -0.72 -14.21 5.53 -466.80 -2.58 -16.79 16 17 C 0.10 1.32 6.16 85.64 0.53 1.85 16 18 C 0.52 6.31 7.64 87.66 0.67 6.98 16 19 O -0.54 -10.14 13.39 -3.06 -0.04 -10.19 16 20 N -0.65 -4.30 5.34 -303.47 -1.62 -5.93 16 21 C 0.17 1.70 6.27 38.13 0.24 1.94 16 22 C -0.11 -1.35 8.65 22.40 0.19 -1.16 16 23 C -0.10 -1.20 10.02 22.29 0.22 -0.98 16 24 C 0.03 0.53 7.30 22.42 0.16 0.69 16 25 F -0.14 -2.55 17.18 44.97 0.77 -1.78 16 26 C 0.08 1.06 7.30 22.39 0.16 1.22 16 27 F -0.13 -2.22 17.18 44.97 0.77 -1.45 16 28 C -0.14 -1.27 9.94 22.43 0.22 -1.04 16 29 H 0.03 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.05 2.81 6.47 -2.39 -0.02 2.79 16 31 H 0.03 1.35 7.53 -2.39 -0.02 1.33 16 32 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.33 14.07 8.14 -89.69 -0.73 13.34 16 34 H 0.07 1.96 7.49 -2.38 -0.02 1.94 16 35 H 0.10 3.17 8.05 -2.39 -0.02 3.15 16 36 H 0.42 7.64 7.44 -92.71 -0.69 6.95 16 37 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.44 -0.25 8.82 -92.70 -0.82 -1.07 16 40 H 0.15 2.03 6.46 -2.91 -0.02 2.01 16 41 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.18 0.57 8.06 -2.91 -0.02 0.54 16 Total: -1.00 -72.38 370.76 0.52 -71.86 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -1.12 Total: 18.01 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.04 Total: 4.02 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -6.87 Total: -106.72 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.09 Total: -30.11 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 1.55 Total: -3.23 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -72.38 0.52 -71.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.636 kcal (2) G-P(sol) polarization free energy of solvation -72.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds