Wall clock time and date at job start Sat Apr 11 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00147 * 2 1 4 4 C 1.52997 * 109.46864 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47449 * 65.00617 * 4 3 2 6 6 C 1.46503 * 119.99684 * 269.99750 * 5 4 3 7 7 C 1.50697 * 109.46909 * 269.99747 * 6 5 4 8 8 H 1.08003 * 120.00206 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00222 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99925 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00425 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47181 * 89.99788 * 11 9 7 13 13 H 1.48500 * 109.47024 * 209.99878 * 11 9 7 14 14 H 1.48494 * 109.46931 * 329.99702 * 11 9 7 15 15 C 1.34771 * 120.00193 * 89.99134 * 5 4 3 16 16 O 1.21288 * 119.99986 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00319 * 0.02562 * 15 5 4 18 18 S 1.81394 * 109.47410 * 179.97438 * 17 15 5 19 19 C 1.81398 * 103.00193 * 179.97438 * 18 17 15 20 20 C 1.50706 * 109.47148 * 179.97438 * 19 18 17 21 21 C 1.38244 * 119.97491 * 269.72674 * 20 19 18 22 22 C 1.38201 * 120.02142 * 179.72306 * 21 20 19 23 23 C 1.38459 * 119.97601 * 0.57371 * 22 21 20 24 24 F 1.35094 * 120.02797 * 179.67746 * 23 22 21 25 25 C 1.38461 * 119.94519 * 359.70287 * 23 22 21 26 26 C 1.38193 * 119.98059 * 359.97438 * 25 23 22 27 27 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47152 * 299.99649 * 1 2 3 29 29 H 1.08998 * 109.47001 * 59.99934 * 1 2 3 30 30 H 1.08998 * 109.46773 * 60.00108 * 3 2 1 31 31 H 1.08994 * 109.47225 * 300.00250 * 3 2 1 32 32 H 1.08997 * 109.47816 * 304.99461 * 4 3 2 33 33 H 1.09006 * 109.46963 * 185.00205 * 4 3 2 34 34 H 1.09000 * 109.46894 * 29.99740 * 6 5 4 35 35 H 1.09000 * 109.47425 * 149.99630 * 6 5 4 36 36 H 0.97001 * 120.00117 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.47180 * 59.99787 * 17 15 5 38 38 H 1.09001 * 109.47086 * 299.99864 * 17 15 5 39 39 H 1.09000 * 109.46753 * 60.00559 * 19 18 17 40 40 H 1.09000 * 109.47055 * 299.99894 * 19 18 17 41 41 H 1.08000 * 119.98716 * 359.97438 * 21 20 19 42 42 H 1.07996 * 120.01399 * 180.25476 * 22 21 20 43 43 H 1.08009 * 120.01051 * 179.97438 * 25 23 22 44 44 H 1.07999 * 119.99486 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3429 7 6 5.5009 -1.2978 -0.9450 8 1 6.2198 -0.5459 -0.6546 9 6 5.8606 -2.6288 -0.9529 10 7 4.9854 -3.5444 -1.3070 11 14 7.5905 -3.1318 -0.4591 12 1 7.6339 -3.3851 1.0036 13 1 7.9733 -4.3682 -1.1871 14 1 8.5395 -2.0421 -0.8011 15 6 4.2614 1.3338 -2.3218 16 8 4.6254 0.8203 -3.3586 17 6 4.1286 2.8320 -2.2290 18 16 4.5818 3.5789 -3.8188 19 6 4.3617 5.3534 -3.5136 20 6 4.7054 6.1243 -4.7621 21 6 6.0005 6.5614 -4.9693 22 6 6.3180 7.2635 -6.1166 23 6 5.3360 7.5393 -7.0529 24 9 5.6439 8.2311 -8.1717 25 6 4.0381 7.1059 -6.8415 26 6 3.7243 6.3982 -5.6967 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5682 0.8409 33 1 3.9785 2.1764 0.0890 34 1 3.3852 -1.3629 -0.6735 35 1 3.9119 -1.2114 -2.3669 36 1 5.2383 -4.4809 -1.3122 37 1 4.7912 3.2079 -1.4494 38 1 3.0981 3.0911 -1.9861 39 1 5.0179 5.6664 -2.7015 40 1 3.3251 5.5490 -3.2392 41 1 6.7651 6.3507 -4.2363 42 1 7.3306 7.6013 -6.2803 43 1 3.2712 7.3208 -7.5710 44 1 2.7119 6.0604 -5.5313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:41 Heat of formation + Delta-G solvation = -97.287389 kcal Electronic energy + Delta-G solvation = -26259.087791 eV Core-core repulsion = 22217.647644 eV Total energy + Delta-G solvation = -4041.440147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.15378 -39.40587 -39.14193 -37.53501 -34.89600 -32.80401 -32.71241 -31.44909 -30.15741 -29.49629 -27.11147 -26.61422 -25.94156 -23.37156 -22.80171 -22.66858 -21.85706 -18.65596 -17.95126 -16.90215 -16.69694 -16.63161 -16.46702 -15.93738 -15.88531 -15.71861 -15.56374 -15.10171 -14.95066 -14.48923 -14.42734 -14.14311 -14.02888 -13.78330 -13.55428 -13.12347 -12.93843 -12.58181 -12.30578 -12.21900 -11.99765 -11.86394 -11.74300 -11.66941 -11.30866 -11.23093 -10.91678 -10.84533 -10.43202 -10.11577 -9.96373 -9.58948 -9.49344 -9.41411 -9.04915 -8.77683 -8.36081 -7.71830 -7.54595 -5.97465 -4.01831 0.60647 0.93739 1.69098 2.55995 3.27578 3.33795 3.36803 3.40582 3.45111 3.85448 3.96885 3.99278 4.32593 4.35307 4.49532 4.59534 4.75104 4.85937 4.94639 5.03855 5.18070 5.19467 5.23230 5.25177 5.36566 5.40922 5.43783 5.50050 5.53787 5.59722 5.59977 5.67747 5.81590 5.81843 5.90829 6.15235 6.16643 6.56465 7.16623 7.34572 7.52616 7.60178 7.99251 8.30484 8.38212 8.90001 9.06192 9.62076 11.10616 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.002464 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.892369 B =11359.261533 C =13053.906860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.044 3.956 4 C 0.110 3.890 5 N -0.584 5.584 6 C 0.251 3.749 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.519 3.481 16 O -0.518 6.518 17 C -0.130 4.130 18 S -0.165 6.165 19 C -0.074 4.074 20 C -0.076 4.076 21 C -0.072 4.072 22 C -0.153 4.153 23 C 0.098 3.902 24 F -0.141 7.141 25 C -0.153 4.153 26 C -0.073 4.073 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 23.129 -1.066 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.035 4.035 4 C -0.015 4.015 5 N -0.316 5.316 6 C 0.132 3.868 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.303 3.697 16 O -0.394 6.394 17 C -0.282 4.282 18 S 0.063 5.937 19 C -0.222 4.222 20 C -0.078 4.078 21 C -0.092 4.092 22 C -0.172 4.172 23 C 0.078 3.922 24 F -0.120 7.120 25 C -0.172 4.172 26 C -0.093 4.093 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.962 21.918 -2.567 22.859 hybrid contribution 0.298 0.646 1.386 1.558 sum -5.664 22.564 -1.180 23.294 Atomic orbital electron populations 1.22709 0.81943 1.02713 0.99111 1.88112 1.18802 1.26743 1.95120 1.23105 0.95275 0.85621 0.99452 1.21546 0.91265 0.98945 0.89734 1.48121 1.64176 1.09889 1.09437 1.19354 0.96866 0.71527 0.99029 1.21446 0.97387 0.92245 1.45488 0.92638 1.24916 0.97384 0.96414 0.95335 1.69946 1.34342 1.00983 1.47907 0.86529 0.84680 0.78111 0.78279 1.20723 1.21134 1.19929 1.19378 0.79227 0.86396 0.84733 1.90730 1.45809 1.73937 1.28961 1.23738 1.05367 0.99071 0.99983 1.87935 1.89754 0.98645 1.17323 1.22429 1.05043 0.96510 0.98185 1.19262 0.94024 0.98636 0.95856 1.20950 0.95897 0.95612 0.96747 1.21137 0.99541 1.01968 0.94519 1.17763 0.94197 0.96034 0.84206 1.91499 1.93752 1.76886 1.49835 1.21128 0.95281 1.01266 0.99542 1.20931 0.99822 0.96162 0.92349 0.89677 0.94663 0.94564 0.92991 0.93861 0.88674 0.90238 0.93444 0.94176 0.92810 0.87799 0.88175 0.89077 0.89167 0.84576 0.84532 0.84561 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.13 9.53 -35.23 -0.34 -6.47 16 3 C 0.04 0.58 6.28 37.16 0.23 0.81 16 4 C 0.11 1.68 5.62 -4.04 -0.02 1.66 16 5 N -0.58 -12.17 2.42 -175.06 -0.42 -12.59 16 6 C 0.25 6.65 4.98 -5.19 -0.03 6.62 16 7 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 11 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.52 10.65 7.69 -10.99 -0.08 10.57 16 16 O -0.52 -13.27 15.44 5.55 0.09 -13.19 16 17 C -0.13 -1.83 4.98 36.00 0.18 -1.65 16 18 S -0.17 -2.39 20.86 -107.50 -2.24 -4.63 16 19 C -0.07 -0.68 6.07 36.01 0.22 -0.46 16 20 C -0.08 -0.72 5.14 -104.61 -0.54 -1.26 16 21 C -0.07 -0.65 9.70 -39.59 -0.38 -1.04 16 22 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16 23 C 0.10 0.96 7.30 -39.42 -0.29 0.68 16 24 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 25 C -0.15 -1.37 10.03 -39.52 -0.40 -1.76 16 26 C -0.07 -0.65 9.70 -39.59 -0.38 -1.03 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.54 7.30 -51.93 -0.38 0.16 16 32 H 0.09 1.56 8.07 -51.93 -0.42 1.15 16 33 H 0.08 0.91 6.44 -51.93 -0.33 0.57 16 34 H 0.05 1.30 7.11 -51.93 -0.37 0.93 16 35 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.10 1.21 7.40 -51.92 -0.38 0.83 16 38 H 0.10 1.12 7.26 -51.92 -0.38 0.74 16 39 H 0.09 0.70 8.08 -51.92 -0.42 0.28 16 40 H 0.09 0.67 8.09 -51.92 -0.42 0.25 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 44 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -35.91 391.12 -8.88 -44.79 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.42 Total: -2.37 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.20 Total: -0.84 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.31 Total: -38.85 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.25 Total: -19.65 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.24 Total: -4.63 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.91 -8.88 -44.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.497 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds