Wall clock time and date at job start Sat Apr 11 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00147 * 2 1 4 4 C 1.52997 * 109.46864 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47449 * 65.00617 * 4 3 2 6 6 C 1.46503 * 119.99684 * 269.99750 * 5 4 3 7 7 C 1.50697 * 109.46909 * 269.99747 * 6 5 4 8 8 H 1.08003 * 120.00206 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00222 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99925 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00425 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47181 * 89.99788 * 11 9 7 13 13 H 1.48500 * 109.47024 * 209.99878 * 11 9 7 14 14 H 1.48494 * 109.46931 * 329.99702 * 11 9 7 15 15 C 1.34771 * 120.00193 * 89.99134 * 5 4 3 16 16 O 1.21288 * 119.99986 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00319 * 0.02562 * 15 5 4 18 18 S 1.81394 * 109.47410 * 179.97438 * 17 15 5 19 19 C 1.81398 * 103.00193 * 179.97438 * 18 17 15 20 20 C 1.50706 * 109.47148 * 179.97438 * 19 18 17 21 21 C 1.38244 * 119.97491 * 269.72674 * 20 19 18 22 22 C 1.38201 * 120.02142 * 179.72306 * 21 20 19 23 23 C 1.38459 * 119.97601 * 0.57371 * 22 21 20 24 24 F 1.35094 * 120.02797 * 179.67746 * 23 22 21 25 25 C 1.38461 * 119.94519 * 359.70287 * 23 22 21 26 26 C 1.38193 * 119.98059 * 359.97438 * 25 23 22 27 27 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47152 * 299.99649 * 1 2 3 29 29 H 1.08998 * 109.47001 * 59.99934 * 1 2 3 30 30 H 1.08998 * 109.46773 * 60.00108 * 3 2 1 31 31 H 1.08994 * 109.47225 * 300.00250 * 3 2 1 32 32 H 1.08997 * 109.47816 * 304.99461 * 4 3 2 33 33 H 1.09006 * 109.46963 * 185.00205 * 4 3 2 34 34 H 1.09000 * 109.46894 * 29.99740 * 6 5 4 35 35 H 1.09000 * 109.47425 * 149.99630 * 6 5 4 36 36 H 0.97001 * 120.00117 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.47180 * 59.99787 * 17 15 5 38 38 H 1.09001 * 109.47086 * 299.99864 * 17 15 5 39 39 H 1.09000 * 109.46753 * 60.00559 * 19 18 17 40 40 H 1.09000 * 109.47055 * 299.99894 * 19 18 17 41 41 H 1.08000 * 119.98716 * 359.97438 * 21 20 19 42 42 H 1.07996 * 120.01399 * 180.25476 * 22 21 20 43 43 H 1.08009 * 120.01051 * 179.97438 * 25 23 22 44 44 H 1.07999 * 119.99486 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3429 7 6 5.5009 -1.2978 -0.9450 8 1 6.2198 -0.5459 -0.6546 9 6 5.8606 -2.6288 -0.9529 10 7 4.9854 -3.5444 -1.3070 11 14 7.5905 -3.1318 -0.4591 12 1 7.6339 -3.3851 1.0036 13 1 7.9733 -4.3682 -1.1871 14 1 8.5395 -2.0421 -0.8011 15 6 4.2614 1.3338 -2.3218 16 8 4.6254 0.8203 -3.3586 17 6 4.1286 2.8320 -2.2290 18 16 4.5818 3.5789 -3.8188 19 6 4.3617 5.3534 -3.5136 20 6 4.7054 6.1243 -4.7621 21 6 6.0005 6.5614 -4.9693 22 6 6.3180 7.2635 -6.1166 23 6 5.3360 7.5393 -7.0529 24 9 5.6439 8.2311 -8.1717 25 6 4.0381 7.1059 -6.8415 26 6 3.7243 6.3982 -5.6967 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5682 0.8409 33 1 3.9785 2.1764 0.0890 34 1 3.3852 -1.3629 -0.6735 35 1 3.9119 -1.2114 -2.3669 36 1 5.2383 -4.4809 -1.3122 37 1 4.7912 3.2079 -1.4494 38 1 3.0981 3.0911 -1.9861 39 1 5.0179 5.6664 -2.7015 40 1 3.3251 5.5490 -3.2392 41 1 6.7651 6.3507 -4.2363 42 1 7.3306 7.6013 -6.2803 43 1 3.2712 7.3208 -7.5710 44 1 2.7119 6.0604 -5.5313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:40 Heat of formation + Delta-G solvation = -119.689510 kcal Electronic energy + Delta-G solvation = -26260.059220 eV Core-core repulsion = 22217.647644 eV Total energy + Delta-G solvation = -4042.411576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.91800 -40.72394 -40.05351 -38.72899 -36.54303 -34.82216 -33.48309 -32.10398 -31.70571 -30.73066 -28.58861 -27.65295 -27.08032 -24.74562 -24.03255 -23.92157 -22.59859 -20.17158 -18.68277 -18.63457 -18.18814 -17.83553 -17.40715 -17.07128 -16.97445 -16.69579 -16.63240 -16.36306 -16.24850 -15.90758 -15.59235 -15.07428 -14.83220 -14.62847 -14.48354 -14.42500 -14.39252 -13.79644 -13.59502 -13.34697 -13.17315 -13.04251 -12.98045 -12.82587 -12.72896 -12.61967 -12.49047 -12.17127 -11.95490 -11.93077 -11.67612 -10.91905 -10.72925 -10.61158 -10.50894 -10.07228 -9.50861 -9.44094 -8.63490 -8.18531 -6.33283 -0.17694 0.28089 0.76528 1.36588 1.40329 1.50318 1.66117 1.76531 2.30432 2.45824 2.69650 2.99098 3.11256 3.27788 3.55679 3.68264 3.73023 3.97230 4.03035 4.13635 4.14718 4.21989 4.31797 4.39803 4.44636 4.52553 4.55459 4.56157 4.61768 4.62370 4.88125 4.96821 4.97865 5.00557 5.15310 5.18647 5.23938 5.30033 5.49419 5.58327 5.86967 5.89738 6.10491 6.36473 6.72575 6.79910 7.29636 7.45396 8.88672 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.002464 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.892369 B =11359.261533 C =13053.906860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.419 6.419 3 C 0.043 3.957 4 C 0.102 3.898 5 N -0.591 5.591 6 C 0.273 3.727 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.005 3.995 10 N -0.930 5.930 11 Si 0.968 3.032 12 H -0.263 1.263 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.507 3.493 16 O -0.583 6.583 17 C -0.105 4.105 18 S -0.248 6.248 19 C -0.047 4.047 20 C -0.089 4.089 21 C -0.077 4.077 22 C -0.160 4.160 23 C 0.080 3.920 24 F -0.149 7.149 25 C -0.159 4.159 26 C -0.076 4.076 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.030 0.970 35 H -0.014 1.014 36 H 0.265 0.735 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 25.917 0.968 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.338 6.338 3 C -0.034 4.034 4 C -0.021 4.021 5 N -0.321 5.321 6 C 0.152 3.848 7 C -0.580 4.580 8 H 0.073 0.927 9 C -0.194 4.194 10 N -0.569 5.569 11 Si 0.792 3.208 12 H -0.187 1.187 13 H -0.209 1.209 14 H -0.196 1.196 15 C 0.294 3.706 16 O -0.464 6.464 17 C -0.255 4.255 18 S -0.019 6.019 19 C -0.194 4.194 20 C -0.090 4.090 21 C -0.097 4.097 22 C -0.178 4.178 23 C 0.060 3.940 24 F -0.128 7.128 25 C -0.178 4.178 26 C -0.095 4.095 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.048 0.952 35 H 0.004 0.996 36 H 0.074 0.926 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.169 0.831 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.027 24.750 -0.481 25.477 hybrid contribution 0.254 -0.157 0.708 0.768 sum -5.773 24.593 0.227 25.262 Atomic orbital electron populations 1.22842 0.80074 1.02985 1.00847 1.88052 1.21116 1.29141 1.95530 1.23218 0.93336 0.84839 1.01976 1.21964 0.93359 1.00445 0.86292 1.48065 1.64301 1.07826 1.11939 1.18640 0.95573 0.75616 0.95015 1.21751 0.98242 0.92605 1.45398 0.92737 1.25887 1.01874 0.96469 0.95171 1.70085 1.36609 1.01394 1.48853 0.85414 0.79044 0.77552 0.78781 1.18743 1.20850 1.19610 1.20463 0.77503 0.89279 0.83352 1.90697 1.48459 1.75868 1.31363 1.23529 1.08396 0.93236 1.00339 1.88304 1.90333 1.04226 1.19037 1.22434 1.07191 0.91242 0.98540 1.19444 0.94332 0.98855 0.96403 1.21186 0.96281 0.95259 0.96944 1.21353 1.00146 1.01904 0.94437 1.18044 0.95007 0.96629 0.84321 1.91475 1.93866 1.77169 1.50309 1.21359 0.95354 1.01019 1.00033 1.21186 1.00658 0.95687 0.92010 0.90371 0.91817 0.93745 0.88693 0.92709 0.90399 0.85331 0.95231 0.99608 0.92578 0.84470 0.84439 0.86858 0.86651 0.83208 0.83246 0.83121 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.91 16 2 O -0.42 -13.67 9.53 -148.98 -1.42 -15.09 16 3 C 0.04 1.03 6.28 71.98 0.45 1.48 16 4 C 0.10 2.90 5.62 86.38 0.49 3.38 16 5 N -0.59 -24.75 2.42 -826.16 -2.00 -26.75 16 6 C 0.27 15.23 4.98 85.63 0.43 15.66 16 7 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 8 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 9 C 0.00 0.27 5.46 84.65 0.46 0.73 16 10 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 11 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 12 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 15 C 0.51 20.81 7.69 87.66 0.67 21.49 16 16 O -0.58 -31.24 15.44 -3.05 -0.05 -31.29 16 17 C -0.10 -2.63 4.98 71.24 0.35 -2.27 16 18 S -0.25 -6.76 20.86 -56.49 -1.18 -7.94 16 19 C -0.05 -0.69 6.07 71.24 0.43 -0.26 16 20 C -0.09 -1.46 5.14 -19.86 -0.10 -1.56 16 21 C -0.08 -1.24 9.70 22.26 0.22 -1.02 16 22 C -0.16 -2.70 10.03 22.31 0.22 -2.47 16 23 C 0.08 1.51 7.30 22.38 0.16 1.67 16 24 F -0.15 -3.09 17.27 44.97 0.78 -2.32 16 25 C -0.16 -2.62 10.03 22.31 0.22 -2.39 16 26 C -0.08 -1.18 9.70 22.26 0.22 -0.96 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.16 7.30 -2.39 -0.02 1.15 16 32 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 33 H 0.13 2.33 6.44 -2.38 -0.02 2.31 16 34 H 0.03 1.73 7.11 -2.39 -0.02 1.71 16 35 H -0.01 -0.93 7.42 -2.39 -0.02 -0.95 16 36 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.14 2.54 7.40 -2.39 -0.02 2.52 16 38 H 0.14 2.42 7.26 -2.39 -0.02 2.41 16 39 H 0.11 1.20 8.08 -2.39 -0.02 1.18 16 40 H 0.12 1.15 8.09 -2.39 -0.02 1.13 16 41 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 44 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -85.57 391.12 5.16 -80.41 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.00 Total: 9.20 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.72 Total: 3.69 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -1.71 Total: -84.66 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -1.47 Total: -46.38 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: -6.76 SS G_CDS: -1.18 Total: -7.94 kcal Total: -85.57 5.16 -80.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.277 kcal (2) G-P(sol) polarization free energy of solvation -85.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds