Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00458 * 2 1 4 4 C 1.52998 * 109.47309 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47232 * 64.99979 * 4 3 2 6 6 C 1.46506 * 119.99822 * 269.99994 * 5 4 3 7 7 C 1.50706 * 109.47117 * 270.00146 * 6 5 4 8 8 H 1.07997 * 119.99651 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99828 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99993 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99744 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47008 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46742 * 120.00191 * 11 9 7 14 14 H 1.48495 * 109.47268 * 239.99912 * 11 9 7 15 15 C 1.34769 * 120.00241 * 90.00321 * 5 4 3 16 16 O 1.21282 * 119.99850 * 359.97438 * 15 5 4 17 17 C 1.50702 * 120.00466 * 179.97438 * 15 5 4 18 18 S 1.81000 * 109.47238 * 179.97438 * 17 15 5 19 19 C 1.76205 * 99.99610 * 179.97438 * 18 17 15 20 20 N 1.31544 * 126.45489 * 0.03071 * 19 18 17 21 21 N 1.28420 * 110.49825 * 179.97438 * 20 19 18 22 22 N 1.28902 * 110.34431 * 0.02562 * 21 20 19 23 23 N 1.35398 * 126.44693 * 179.71414 * 19 18 17 24 24 C 1.46498 * 127.38863 * 359.97438 * 23 19 18 25 25 C 1.52998 * 117.49634 * 188.62253 * 24 23 19 26 26 C 1.52998 * 117.49778 * 119.99828 * 24 23 19 27 27 H 1.09000 * 109.46599 * 59.99556 * 1 2 3 28 28 H 1.08992 * 109.47370 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46558 * 300.00245 * 1 2 3 30 30 H 1.08999 * 109.46874 * 59.99742 * 3 2 1 31 31 H 1.08998 * 109.47029 * 299.99688 * 3 2 1 32 32 H 1.09007 * 109.47087 * 304.99732 * 4 3 2 33 33 H 1.08999 * 109.47095 * 185.00313 * 4 3 2 34 34 H 1.08996 * 109.46927 * 29.99844 * 6 5 4 35 35 H 1.08998 * 109.46879 * 150.00184 * 6 5 4 36 36 H 0.97001 * 119.99370 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.46923 * 59.99646 * 17 15 5 38 38 H 1.09004 * 109.46818 * 300.00196 * 17 15 5 39 39 H 1.09002 * 115.54795 * 334.32905 * 24 23 19 40 40 H 1.08998 * 117.50523 * 359.97438 * 25 24 23 41 41 H 1.09004 * 117.49431 * 145.02557 * 25 24 23 42 42 H 1.09001 * 117.49567 * 214.97295 * 26 24 23 43 43 H 1.08996 * 117.50258 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.1052 -0.8923 -1.3427 7 6 5.5010 -1.2981 -0.9448 8 1 6.2198 -0.5462 -0.6544 9 6 5.8605 -2.6291 -0.9526 10 7 4.9855 -3.5446 -1.3077 11 14 7.5908 -3.1320 -0.4600 12 1 8.3762 -1.9223 -0.1067 13 1 7.5272 -4.0404 0.7130 14 1 8.2443 -3.8333 -1.5942 15 6 4.2617 1.3335 -2.3218 16 8 4.1541 2.5392 -2.2474 17 6 4.7151 0.6955 -3.6096 18 16 5.0175 1.9819 -4.8464 19 6 5.5205 0.9841 -6.2088 20 7 5.6169 -0.3277 -6.2234 21 7 6.0112 -0.7369 -7.3750 22 7 6.1935 0.2632 -8.1677 23 7 5.8750 1.4230 -7.4397 24 6 5.9193 2.8093 -7.9112 25 6 6.1581 3.0402 -9.4047 26 6 7.2667 3.3479 -8.3960 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6888 1.8463 -0.8900 32 1 3.8515 0.5680 0.8410 33 1 3.9786 2.1763 0.0890 34 1 3.3853 -1.3631 -0.6733 35 1 3.9120 -1.2116 -2.3668 36 1 5.2387 -4.4809 -1.3135 37 1 3.9413 0.0184 -3.9717 38 1 5.6341 0.1363 -3.4342 39 1 5.2566 3.5032 -7.3939 40 1 6.2827 2.1608 -10.0364 41 1 5.6525 3.8862 -9.8703 42 1 7.4903 4.3962 -8.1982 43 1 8.1204 2.6709 -8.3638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = 72.131153 kcal Electronic energy + Delta-G solvation = -27294.642813 eV Core-core repulsion = 23312.761918 eV Total energy + Delta-G solvation = -3981.880895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.78238 -39.37631 -37.96361 -37.46199 -35.07952 -33.15154 -32.65384 -32.16401 -30.84549 -28.69795 -27.07688 -25.89788 -25.35576 -23.42007 -22.95499 -22.86990 -22.57407 -21.64117 -18.99120 -18.06499 -16.99885 -16.79766 -16.64233 -16.46523 -16.05230 -15.78306 -15.50196 -15.13567 -14.91848 -14.46330 -14.36091 -14.04584 -13.87704 -13.17986 -12.94326 -12.69431 -12.41606 -12.28632 -12.17263 -12.04599 -12.03413 -11.74185 -11.56716 -11.50188 -11.24553 -10.96819 -10.93273 -10.89603 -10.82410 -10.67225 -10.50439 -10.13135 -10.05798 -9.73488 -9.52976 -9.32526 -8.51067 -7.95458 -7.81542 -6.13534 -4.21541 0.76699 0.87318 1.91322 1.97133 2.31849 3.06323 3.16521 3.26705 3.35783 3.37991 3.74711 3.88657 4.09978 4.22734 4.34460 4.37447 4.61668 5.00121 5.07068 5.14242 5.20472 5.28140 5.32749 5.39338 5.42418 5.46116 5.52158 5.58684 5.60017 5.61407 5.62790 5.82440 5.90956 5.98402 6.07733 6.28021 6.71273 7.23041 7.42320 7.48003 7.80075 8.07291 8.16503 8.49166 8.61866 8.87623 9.46307 10.93456 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009425 B = 0.003684 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.085673 B = 7598.929575 C = 9488.008707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.122 3.878 5 N -0.574 5.574 6 C 0.235 3.765 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.070 3.930 10 N -0.884 5.884 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.534 3.466 16 O -0.569 6.569 17 C -0.135 4.135 18 S 0.094 5.906 19 C 0.209 3.791 20 N -0.324 5.324 21 N -0.030 5.030 22 N -0.094 5.094 23 N -0.341 5.341 24 C 0.062 3.938 25 C -0.156 4.156 26 C -0.166 4.166 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.037 0.963 36 H 0.265 0.735 37 H 0.127 0.873 38 H 0.142 0.858 39 H 0.157 0.843 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 14.549 -7.977 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.031 4.031 4 C -0.001 4.001 5 N -0.303 5.303 6 C 0.116 3.884 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.134 4.134 10 N -0.521 5.521 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.207 1.207 15 C 0.320 3.680 16 O -0.452 6.452 17 C -0.286 4.286 18 S 0.319 5.681 19 C -0.175 4.175 20 N -0.180 5.180 21 N -0.025 5.025 22 N -0.081 5.081 23 N -0.140 5.140 24 C -0.043 4.043 25 C -0.194 4.194 26 C -0.204 4.204 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.160 0.840 39 H 0.174 0.826 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.174 14.641 -8.473 17.211 hybrid contribution 0.699 -0.897 0.399 1.205 sum -2.475 13.744 -8.073 16.130 Atomic orbital electron populations 1.22686 0.82051 1.02486 0.99181 1.88062 1.18755 1.27316 1.95210 1.23013 0.95061 0.85062 0.99919 1.21410 0.91241 0.99744 0.87743 1.48084 1.62318 1.10265 1.09596 1.19624 0.97768 0.72023 0.99000 1.21484 0.97119 0.92536 1.47271 0.92098 1.24899 0.97436 0.96349 0.94739 1.69931 1.34279 1.01247 1.46680 0.86512 0.84383 0.78703 0.78318 1.19720 1.20857 1.20736 1.19370 0.77652 0.86401 0.84599 1.90634 1.56385 1.14044 1.84142 1.23923 1.09820 1.00256 0.94634 1.86052 1.79974 1.04675 0.97433 1.28256 1.00195 0.95825 0.93229 1.75141 1.22160 1.05790 1.14930 1.77885 1.08227 1.20163 0.96261 1.82372 1.21962 0.86329 1.17403 1.50926 1.47564 1.07971 1.07496 1.22165 1.03994 0.78111 0.99995 1.23399 1.01378 1.04658 0.89995 1.23525 0.92158 1.03170 1.01595 0.94619 0.89802 0.94689 0.93025 0.93317 0.89022 0.89195 0.92769 0.94497 0.92522 0.85486 0.83997 0.82581 0.86798 0.86558 0.86391 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.38 9.53 -35.23 -0.34 -6.71 16 3 C 0.05 0.72 6.28 37.16 0.23 0.95 16 4 C 0.12 2.10 5.81 -4.04 -0.02 2.08 16 5 N -0.57 -11.46 2.42 -175.05 -0.42 -11.88 16 6 C 0.24 5.49 4.78 -5.19 -0.02 5.47 16 7 C -0.55 -14.01 9.28 -34.44 -0.32 -14.33 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 10 N -0.88 -24.71 13.29 55.43 0.74 -23.97 16 11 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.53 10.29 7.69 -10.99 -0.08 10.21 16 16 O -0.57 -11.31 15.44 5.56 0.09 -11.23 16 17 C -0.14 -2.42 4.27 36.01 0.15 -2.27 16 18 S 0.09 1.40 21.10 -107.50 -2.27 -0.87 16 19 C 0.21 3.37 8.15 -89.17 -0.73 2.64 16 20 N -0.32 -6.18 11.57 30.50 0.35 -5.83 16 21 N -0.03 -0.56 13.38 60.35 0.81 0.25 16 22 N -0.09 -1.53 13.45 60.35 0.81 -0.72 16 23 N -0.34 -4.81 4.01 -54.80 -0.22 -5.03 16 24 C 0.06 0.58 6.73 -67.93 -0.46 0.12 16 25 C -0.16 -1.09 10.22 -26.73 -0.27 -1.37 16 26 C -0.17 -1.20 10.46 -26.73 -0.28 -1.48 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 33 H 0.09 1.45 7.42 -51.93 -0.39 1.06 16 34 H 0.05 1.37 7.11 -51.93 -0.37 1.00 16 35 H 0.04 0.90 6.44 -51.93 -0.33 0.57 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.13 2.27 7.40 -51.91 -0.38 1.89 16 38 H 0.14 2.78 8.00 -51.92 -0.42 2.36 16 39 H 0.16 1.15 8.08 -51.93 -0.42 0.73 16 40 H 0.11 0.95 7.91 -51.93 -0.41 0.54 16 41 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -31.73 386.89 -6.50 -38.23 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.07 Total: 0.75 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -0.79 Total: 5.31 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 2.06 Total: -47.18 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.25 Total: -17.94 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.27 Total: -0.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.73 -6.50 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.360 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds