Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00458 * 2 1 4 4 C 1.52998 * 109.47309 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47232 * 64.99979 * 4 3 2 6 6 C 1.46506 * 119.99822 * 269.99994 * 5 4 3 7 7 C 1.50706 * 109.47117 * 270.00146 * 6 5 4 8 8 H 1.07997 * 119.99651 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99828 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99993 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99744 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47008 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46742 * 120.00191 * 11 9 7 14 14 H 1.48495 * 109.47268 * 239.99912 * 11 9 7 15 15 C 1.34769 * 120.00241 * 90.00321 * 5 4 3 16 16 O 1.21282 * 119.99850 * 359.97438 * 15 5 4 17 17 C 1.50702 * 120.00466 * 179.97438 * 15 5 4 18 18 S 1.81000 * 109.47238 * 179.97438 * 17 15 5 19 19 C 1.76205 * 99.99610 * 179.97438 * 18 17 15 20 20 N 1.31544 * 126.45489 * 0.03071 * 19 18 17 21 21 N 1.28420 * 110.49825 * 179.97438 * 20 19 18 22 22 N 1.28902 * 110.34431 * 0.02562 * 21 20 19 23 23 N 1.35398 * 126.44693 * 179.71414 * 19 18 17 24 24 C 1.46498 * 127.38863 * 359.97438 * 23 19 18 25 25 C 1.52998 * 117.49634 * 188.62253 * 24 23 19 26 26 C 1.52998 * 117.49778 * 119.99828 * 24 23 19 27 27 H 1.09000 * 109.46599 * 59.99556 * 1 2 3 28 28 H 1.08992 * 109.47370 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46558 * 300.00245 * 1 2 3 30 30 H 1.08999 * 109.46874 * 59.99742 * 3 2 1 31 31 H 1.08998 * 109.47029 * 299.99688 * 3 2 1 32 32 H 1.09007 * 109.47087 * 304.99732 * 4 3 2 33 33 H 1.08999 * 109.47095 * 185.00313 * 4 3 2 34 34 H 1.08996 * 109.46927 * 29.99844 * 6 5 4 35 35 H 1.08998 * 109.46879 * 150.00184 * 6 5 4 36 36 H 0.97001 * 119.99370 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.46923 * 59.99646 * 17 15 5 38 38 H 1.09004 * 109.46818 * 300.00196 * 17 15 5 39 39 H 1.09002 * 115.54795 * 334.32905 * 24 23 19 40 40 H 1.08998 * 117.50523 * 359.97438 * 25 24 23 41 41 H 1.09004 * 117.49431 * 145.02557 * 25 24 23 42 42 H 1.09001 * 117.49567 * 214.97295 * 26 24 23 43 43 H 1.08996 * 117.50258 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.1052 -0.8923 -1.3427 7 6 5.5010 -1.2981 -0.9448 8 1 6.2198 -0.5462 -0.6544 9 6 5.8605 -2.6291 -0.9526 10 7 4.9855 -3.5446 -1.3077 11 14 7.5908 -3.1320 -0.4600 12 1 8.3762 -1.9223 -0.1067 13 1 7.5272 -4.0404 0.7130 14 1 8.2443 -3.8333 -1.5942 15 6 4.2617 1.3335 -2.3218 16 8 4.1541 2.5392 -2.2474 17 6 4.7151 0.6955 -3.6096 18 16 5.0175 1.9819 -4.8464 19 6 5.5205 0.9841 -6.2088 20 7 5.6169 -0.3277 -6.2234 21 7 6.0112 -0.7369 -7.3750 22 7 6.1935 0.2632 -8.1677 23 7 5.8750 1.4230 -7.4397 24 6 5.9193 2.8093 -7.9112 25 6 6.1581 3.0402 -9.4047 26 6 7.2667 3.3479 -8.3960 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6888 1.8463 -0.8900 32 1 3.8515 0.5680 0.8410 33 1 3.9786 2.1763 0.0890 34 1 3.3853 -1.3631 -0.6733 35 1 3.9120 -1.2116 -2.3668 36 1 5.2387 -4.4809 -1.3135 37 1 3.9413 0.0184 -3.9717 38 1 5.6341 0.1363 -3.4342 39 1 5.2566 3.5032 -7.3939 40 1 6.2827 2.1608 -10.0364 41 1 5.6525 3.8862 -9.8703 42 1 7.4903 4.3962 -8.1982 43 1 8.1204 2.6709 -8.3638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = 51.957165 kcal Electronic energy + Delta-G solvation = -27295.517623 eV Core-core repulsion = 23312.761918 eV Total energy + Delta-G solvation = -3982.755705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.05175 -40.92905 -38.73485 -38.68962 -36.72317 -34.59395 -34.24780 -33.47295 -32.29255 -30.19526 -28.81736 -27.06217 -26.47612 -24.87346 -24.61754 -23.91548 -23.45859 -22.65763 -20.38411 -19.29925 -18.62226 -18.23197 -18.11781 -17.72109 -17.44763 -17.09027 -16.73308 -16.33213 -16.20293 -16.10321 -15.70051 -15.33564 -14.75876 -14.53642 -14.44415 -14.16834 -13.90350 -13.61228 -13.54219 -13.33990 -13.23648 -13.02369 -12.76375 -12.72842 -12.65600 -12.59422 -12.38309 -12.15676 -12.11639 -11.98396 -11.81068 -11.68929 -11.64242 -11.06578 -10.97559 -10.60703 -10.50584 -9.54753 -9.11533 -8.18051 -6.32042 -0.48076 -0.34321 0.57150 0.92775 0.96765 1.39963 1.42764 1.49799 1.53955 2.21972 2.43182 2.49615 2.96550 3.04251 3.13979 3.38959 3.49856 3.64889 3.74646 3.93766 4.03149 4.17417 4.20811 4.24482 4.41073 4.43314 4.47766 4.55144 4.58162 4.63521 4.63989 4.87199 4.90182 4.91639 5.00552 5.07379 5.13895 5.31933 5.61916 5.80232 6.07317 6.29674 6.48524 6.79849 7.08792 7.18643 7.39808 8.88108 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009425 B = 0.003684 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.085673 B = 7598.929575 C = 9488.008707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.053 3.947 4 C 0.116 3.884 5 N -0.579 5.579 6 C 0.257 3.743 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.023 3.977 10 N -0.917 5.917 11 Si 0.951 3.049 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.285 1.285 15 C 0.536 3.464 16 O -0.571 6.571 17 C -0.142 4.142 18 S 0.151 5.849 19 C 0.196 3.804 20 N -0.360 5.360 21 N -0.062 5.062 22 N -0.092 5.092 23 N -0.325 5.325 24 C 0.023 3.977 25 C -0.141 4.141 26 C -0.153 4.153 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.033 0.967 35 H 0.021 0.979 36 H 0.266 0.734 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.180 0.820 40 H 0.098 0.902 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 17.286 -8.244 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.024 4.024 4 C -0.007 4.007 5 N -0.308 5.308 6 C 0.136 3.864 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.177 4.177 10 N -0.556 5.556 11 Si 0.777 3.223 12 H -0.190 1.190 13 H -0.202 1.202 14 H -0.211 1.211 15 C 0.322 3.678 16 O -0.455 6.455 17 C -0.294 4.294 18 S 0.376 5.624 19 C -0.188 4.188 20 N -0.217 5.217 21 N -0.057 5.057 22 N -0.080 5.080 23 N -0.123 5.123 24 C -0.079 4.079 25 C -0.178 4.178 26 C -0.191 4.191 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.051 0.949 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.197 0.803 40 H 0.117 0.883 41 H 0.169 0.831 42 H 0.169 0.831 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.025 17.421 -8.741 19.724 hybrid contribution 0.630 -1.601 0.403 1.767 sum -2.395 15.821 -8.337 18.043 Atomic orbital electron populations 1.22861 0.80025 1.03243 1.00684 1.88011 1.21126 1.28429 1.95505 1.22966 0.93385 0.84772 1.01267 1.21624 0.93064 0.99829 0.86175 1.48024 1.62759 1.09006 1.10979 1.19109 0.96036 0.73977 0.97267 1.21728 0.97993 0.92492 1.46399 0.92417 1.25610 1.00675 0.96543 0.94907 1.70031 1.35991 1.01493 1.48050 0.85611 0.80416 0.78448 0.77868 1.19023 1.20206 1.21112 1.19463 0.77299 0.86298 0.84719 1.90620 1.56610 1.13935 1.84287 1.23784 1.08597 1.01498 0.95497 1.85710 1.79702 1.01797 0.95213 1.28375 1.00693 0.95380 0.94321 1.75023 1.23378 1.07657 1.15641 1.77855 1.09905 1.21317 0.96640 1.82240 1.21426 0.86833 1.17452 1.51226 1.45552 1.09094 1.06465 1.22929 1.06659 0.75950 1.02399 1.23547 1.00845 1.05102 0.88316 1.23655 0.90574 1.04373 1.00542 0.93863 0.89560 0.92325 0.89718 0.93682 0.89786 0.87909 0.94865 0.96078 0.92523 0.86061 0.85981 0.80281 0.88346 0.83077 0.83126 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -13.82 9.53 -148.98 -1.42 -15.24 16 3 C 0.05 1.56 6.28 71.98 0.45 2.01 16 4 C 0.12 3.91 5.81 86.38 0.50 4.41 16 5 N -0.58 -23.29 2.42 -826.14 -2.00 -25.29 16 6 C 0.26 12.36 4.78 85.63 0.41 12.77 16 7 C -0.55 -28.62 9.28 25.60 0.24 -28.38 16 8 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.02 1.26 5.46 84.65 0.46 1.72 16 10 N -0.92 -52.44 13.29 21.45 0.28 -52.15 16 11 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 12 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 13 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 C 0.54 20.58 7.69 87.66 0.67 21.25 16 16 O -0.57 -21.96 15.44 -3.04 -0.05 -22.01 16 17 C -0.14 -5.18 4.27 71.24 0.30 -4.88 16 18 S 0.15 4.37 21.10 -56.49 -1.19 3.18 16 19 C 0.20 6.30 8.15 179.84 1.47 7.77 16 20 N -0.36 -14.15 11.57 -57.40 -0.66 -14.81 16 21 N -0.06 -2.40 13.38 37.02 0.50 -1.91 16 22 N -0.09 -3.02 13.45 37.02 0.50 -2.53 16 23 N -0.32 -8.90 4.01 -327.29 -1.31 -10.21 16 24 C 0.02 0.37 6.73 44.99 0.30 0.67 16 25 C -0.14 -1.56 10.22 30.60 0.31 -1.24 16 26 C -0.15 -1.78 10.46 30.60 0.32 -1.46 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 2.94 8.07 -2.38 -0.02 2.92 16 33 H 0.10 3.17 7.42 -2.39 -0.02 3.15 16 34 H 0.03 1.74 7.11 -2.39 -0.02 1.73 16 35 H 0.02 1.08 6.44 -2.39 -0.02 1.07 16 36 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.12 4.52 7.40 -2.39 -0.02 4.51 16 38 H 0.12 4.96 8.00 -2.39 -0.02 4.94 16 39 H 0.18 2.05 8.08 -2.39 -0.02 2.03 16 40 H 0.10 1.47 7.91 -2.39 -0.02 1.45 16 41 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -69.89 386.89 4.39 -65.51 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 1.03 Total: 13.64 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.69 Total: 16.57 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -2.70 Total: -106.90 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.47 Total: -37.25 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.19 Total: 3.18 kcal Total: -69.89 4.39 -65.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.463 kcal (2) G-P(sol) polarization free energy of solvation -69.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds