Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40024 * 126.26196 * 2 1 4 4 N 1.23647 * 109.32098 * 180.02562 * 3 2 1 5 5 N 1.40025 * 109.31492 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.25669 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47215 * 270.02528 * 6 5 4 8 8 O 1.21403 * 120.00185 * 0.02562 * 7 6 5 9 9 C 1.41736 * 119.99995 * 179.72735 * 7 6 5 10 10 C 1.37861 * 126.91009 * 0.29839 * 9 7 6 11 11 N 1.34669 * 109.61873 * 180.02562 * 10 9 7 12 12 C 1.46494 * 124.64158 * 180.02562 * 11 10 9 13 13 C 1.50709 * 109.47189 * 265.02390 * 12 11 10 14 14 H 1.07998 * 119.99797 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00020 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00330 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99689 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47383 * 59.99849 * 17 15 13 19 19 H 1.48501 * 109.47018 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47114 * 299.99883 * 17 15 13 21 21 C 1.38014 * 110.70941 * 0.02562 * 11 10 9 22 22 C 1.39151 * 133.03987 * 180.02562 * 21 11 10 23 23 C 1.37764 * 119.94885 * 179.97438 * 22 21 11 24 24 C 1.38733 * 120.63862 * 359.97438 * 23 22 21 25 25 C 1.37794 * 120.26649 * 0.02725 * 24 23 22 26 26 C 1.39190 * 119.67520 * 359.64667 * 25 24 23 27 27 C 1.35052 * 107.48269 * 0.26690 * 5 4 3 28 28 O 1.21825 * 126.79864 * 179.74197 * 27 5 4 29 29 H 1.08997 * 109.47454 * 359.97011 * 1 2 3 30 30 H 1.08996 * 109.47533 * 119.97795 * 1 2 3 31 31 H 1.09007 * 109.47096 * 239.97589 * 1 2 3 32 32 H 1.09004 * 109.47039 * 150.02714 * 6 5 4 33 33 H 1.08994 * 109.47376 * 30.02578 * 6 5 4 34 34 H 1.08006 * 125.18826 * 359.96984 * 10 9 7 35 35 H 1.08998 * 109.48039 * 25.02174 * 12 11 10 36 36 H 1.08999 * 109.47311 * 145.02930 * 12 11 10 37 37 H 0.96995 * 120.00110 * 180.02562 * 16 15 13 38 38 H 1.08000 * 120.02245 * 359.96671 * 22 21 11 39 39 H 1.08004 * 119.68482 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.86555 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.16299 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2932 1.1290 0.0000 4 7 3.4760 0.7688 -0.0005 5 7 3.5340 -0.6303 -0.0003 6 6 4.7502 -1.4470 -0.0013 7 6 5.1663 -1.7268 -1.4225 8 8 4.5110 -1.2865 -2.3447 9 6 6.3262 -2.4988 -1.6824 10 6 7.1700 -3.0648 -0.7506 11 7 8.1622 -3.7229 -1.3799 12 6 9.2421 -4.4456 -0.7035 13 6 10.4449 -3.5467 -0.5751 14 1 10.4083 -2.5378 -0.9587 15 6 11.5919 -4.0123 0.0319 16 7 11.6362 -5.2408 0.4995 17 14 13.0829 -2.8983 0.1903 18 1 12.7205 -1.6958 0.9827 19 1 14.1775 -3.6309 0.8762 20 1 13.5359 -2.4824 -1.1613 21 6 8.0223 -3.6230 -2.7493 22 6 8.7659 -4.1138 -3.8182 23 6 8.3720 -3.8456 -5.1108 24 6 7.2367 -3.0885 -5.3612 25 6 6.4874 -2.5938 -4.3160 26 6 6.8705 -2.8632 -3.0053 27 6 2.2638 -1.0890 -0.0056 28 8 1.9088 -2.2544 -0.0115 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5135 -0.8901 31 1 -0.3634 -0.5142 0.8898 32 1 4.5560 -2.3886 0.5125 33 1 5.5483 -0.9109 0.5120 34 1 7.0535 -2.9909 0.3206 35 1 8.9094 -4.7510 0.2885 36 1 9.5086 -5.3282 -1.2850 37 1 12.4430 -5.5682 0.9269 38 1 9.6512 -4.7045 -3.6346 39 1 8.9525 -4.2283 -5.9372 40 1 6.9395 -2.8854 -6.3794 41 1 5.6041 -2.0042 -4.5128 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000641515820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = 109.578959 kcal Electronic energy + Delta-G solvation = -28489.937388 eV Core-core repulsion = 24374.236401 eV Total energy + Delta-G solvation = -4115.700988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.93958 -41.10793 -38.77330 -38.07163 -36.74383 -35.33859 -33.70557 -33.39134 -32.03158 -29.93861 -29.76280 -28.39794 -27.76124 -26.85860 -24.11872 -23.35985 -22.75113 -22.37795 -21.62462 -20.50737 -18.99965 -17.94491 -17.46254 -16.96651 -16.62872 -16.43250 -16.32691 -15.92301 -15.20847 -15.12931 -14.89740 -14.49284 -14.14703 -13.90955 -13.81547 -13.64496 -13.56103 -13.38868 -13.20840 -13.05940 -12.89382 -12.52935 -12.23592 -12.16060 -11.85166 -11.50230 -11.30055 -11.01205 -10.95848 -10.86326 -10.65955 -10.62914 -10.33143 -9.87846 -9.69437 -9.12710 -9.11693 -8.83648 -7.84889 -7.26572 -6.45450 -4.56632 0.92924 1.11843 1.19735 1.85844 2.23769 2.24478 2.73292 3.11129 3.16533 3.18490 3.41306 3.49589 3.86265 4.13206 4.22832 4.35300 4.67148 4.88353 4.89934 4.97119 5.07233 5.14003 5.16949 5.17549 5.28396 5.36162 5.43282 5.53196 5.61693 5.69514 5.90837 5.98930 6.06568 6.23568 6.43190 6.49913 6.72006 6.84736 6.97524 7.07288 7.25353 7.44599 7.52247 7.61866 7.63385 7.67484 7.72868 7.93636 8.50116 9.12772 10.61131 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.002967 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.925854 B = 9433.627683 C =10821.007733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.476 5.476 3 N 0.015 4.985 4 N 0.033 4.967 5 N -0.454 5.454 6 C 0.105 3.895 7 C 0.417 3.583 8 O -0.476 6.476 9 C -0.314 4.314 10 C 0.158 3.842 11 N -0.419 5.419 12 C 0.226 3.774 13 C -0.549 4.549 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.887 5.887 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.085 3.915 22 C -0.098 4.098 23 C -0.121 4.121 24 C -0.140 4.140 25 C -0.084 4.084 26 C -0.054 4.054 27 C 0.649 3.351 28 O -0.527 6.527 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.177 0.823 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.271 0.729 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.843 6.966 -0.639 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.308 5.308 3 N 0.017 4.983 4 N 0.036 4.964 5 N -0.284 5.284 6 C -0.017 4.017 7 C 0.298 3.702 8 O -0.354 6.354 9 C -0.323 4.323 10 C 0.015 3.985 11 N -0.092 5.092 12 C 0.108 3.892 13 C -0.587 4.587 14 H 0.085 0.915 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.733 3.267 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.020 4.020 22 C -0.118 4.118 23 C -0.140 4.140 24 C -0.159 4.159 25 C -0.102 4.102 26 C -0.057 4.057 27 C 0.347 3.653 28 O -0.396 6.396 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.194 0.806 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.704 7.056 -0.874 16.333 hybrid contribution 0.868 -0.270 0.297 0.956 sum -13.836 6.787 -0.577 15.421 Atomic orbital electron populations 1.21812 0.71012 1.04914 1.03918 1.49980 1.08356 1.03117 1.69309 1.79595 0.95334 1.11217 1.12160 1.79604 1.12998 0.93459 1.10385 1.49692 1.07600 1.02896 1.68164 1.22254 0.83702 0.95850 0.99906 1.20069 0.83188 0.77525 0.89385 1.90528 1.52666 1.45554 1.46671 1.19306 1.03503 1.16815 0.92674 1.22569 0.86973 0.90787 0.98135 1.44642 1.21218 1.38807 1.04509 1.19988 0.83158 0.92572 0.93482 1.21245 0.97005 0.99753 1.40731 0.91467 1.24932 0.98867 0.95345 0.94348 1.69896 1.29397 1.15519 1.37622 0.86402 0.81195 0.80335 0.78777 1.19766 1.20865 1.19796 1.18310 0.97399 1.02230 0.84057 1.20216 0.99704 1.01504 0.90391 1.20724 0.97514 1.00310 0.95478 1.20871 0.96334 1.00353 0.98313 1.20477 0.99740 0.99683 0.90346 1.18779 0.94965 0.99538 0.92463 1.16862 0.81962 0.85624 0.80901 1.91153 1.77919 1.13666 1.56860 0.88129 0.89943 0.89921 0.84913 0.84752 0.80566 0.92753 0.93034 0.91946 0.85633 0.86136 0.86488 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.85 11.42 59.85 0.68 1.53 16 2 N -0.48 -5.62 4.02 -71.87 -0.29 -5.91 16 3 N 0.01 0.18 13.55 60.35 0.82 1.00 16 4 N 0.03 0.44 13.55 60.35 0.82 1.26 16 5 N -0.45 -6.30 3.11 -66.21 -0.21 -6.51 16 6 C 0.10 1.27 6.15 -5.19 -0.03 1.24 16 7 C 0.42 6.72 7.02 -32.97 -0.23 6.49 16 8 O -0.48 -9.15 16.07 5.45 0.09 -9.07 16 9 C -0.31 -5.36 6.11 -104.87 -0.64 -6.00 16 10 C 0.16 2.56 10.71 -16.45 -0.18 2.38 16 11 N -0.42 -8.11 2.70 -115.28 -0.31 -8.42 16 12 C 0.23 4.93 5.68 -5.19 -0.03 4.90 16 13 C -0.55 -13.43 9.39 -34.44 -0.32 -13.75 16 14 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -23.05 13.29 55.43 0.74 -22.32 16 17 Si 0.91 19.57 29.54 -169.99 -5.02 14.55 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 C 0.08 1.65 6.78 -83.95 -0.57 1.08 16 22 C -0.10 -1.79 9.96 -39.42 -0.39 -2.18 16 23 C -0.12 -1.90 10.01 -39.57 -0.40 -2.29 16 24 C -0.14 -2.17 10.03 -39.56 -0.40 -2.57 16 25 C -0.08 -1.48 9.80 -39.39 -0.39 -1.86 16 26 C -0.05 -1.03 6.24 -104.93 -0.65 -1.68 16 27 C 0.65 9.56 8.77 -86.42 -0.76 8.80 16 28 O -0.53 -9.05 17.84 5.08 0.09 -8.96 16 29 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.13 1.34 8.13 -51.93 -0.42 0.92 16 33 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.18 2.07 7.91 -52.48 -0.42 1.66 16 35 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.12 2.14 7.38 -52.48 -0.39 1.75 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -32.56 371.02 -6.66 -39.22 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -4.57 Total: 1.84 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -4.40 Total: -2.28 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 1.56 Total: -40.90 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.18 Total: -18.03 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.56 -6.66 -39.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000641515820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.802 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds