Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40047 * 125.87296 * 2 1 4 4 C 1.30227 * 109.72322 * 180.02562 * 3 2 1 5 5 C 1.41257 * 108.46879 * 0.02562 * 4 3 2 6 6 C 1.36335 * 125.86527 * 180.02562 * 2 1 3 7 7 N 1.33137 * 134.54951 * 0.29245 * 6 2 1 8 8 C 1.32207 * 120.57250 * 180.20240 * 7 6 2 9 9 N 1.38385 * 118.79088 * 179.71680 * 8 7 6 10 10 C 1.46508 * 119.99957 * 179.73494 * 9 8 7 11 11 C 1.50698 * 109.46930 * 180.02562 * 10 9 8 12 12 C 1.38297 * 119.93202 * 89.99834 * 11 10 9 13 13 C 1.38101 * 120.07230 * 180.02562 * 12 11 10 14 14 C 1.38886 * 119.92536 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47448 * 89.99502 * 20 18 16 22 22 H 1.48501 * 109.47175 * 209.99712 * 20 18 16 23 23 H 1.48506 * 109.47415 * 329.99678 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38106 * 119.92542 * 359.44577 * 24 14 13 26 26 N 1.32824 * 122.41639 * 359.44224 * 8 7 6 27 27 C 1.32548 * 121.16298 * 0.27431 * 26 8 7 28 28 O 1.35364 * 120.73470 * 179.97438 * 27 26 8 29 29 H 1.09008 * 109.47003 * 89.97160 * 1 2 3 30 30 H 1.09000 * 109.47535 * 209.97256 * 1 2 3 31 31 H 1.08998 * 109.47150 * 329.97842 * 1 2 3 32 32 H 1.07999 * 125.76425 * 179.97438 * 4 3 2 33 33 H 0.96994 * 119.99958 * 359.73220 * 9 8 7 34 34 H 1.09003 * 109.46889 * 59.99802 * 10 9 8 35 35 H 1.09004 * 109.46798 * 299.99959 * 10 9 8 36 36 H 1.07999 * 119.96698 * 0.02562 * 12 11 10 37 37 H 1.07992 * 120.03608 * 179.97438 * 13 12 11 38 38 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 40 40 H 1.07997 * 119.96326 * 180.27708 * 25 24 14 41 41 H 0.96696 * 114.00171 * 90.00098 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2856 1.1348 0.0000 4 6 3.5365 0.7726 -0.0005 5 6 3.5937 -0.6388 -0.0015 6 6 2.2637 -1.1049 -0.0005 7 7 2.0420 -2.4176 -0.0059 8 6 3.0524 -3.2702 -0.0007 9 7 2.7797 -4.6269 -0.0006 10 6 3.8792 -5.5952 -0.0007 11 6 3.3171 -6.9935 -0.0013 12 6 3.0600 -7.6333 -1.2000 13 6 2.5444 -8.9145 -1.2039 14 6 2.2847 -9.5605 -0.0022 15 8 1.7784 -10.8200 -0.0027 16 6 1.6579 -11.4308 -1.1986 17 1 1.8810 -10.8898 -2.1063 18 6 1.2474 -12.7537 -1.2632 19 7 0.9760 -13.4130 -0.1576 20 14 1.0811 -13.6001 -2.9201 21 1 2.3710 -14.2422 -3.2797 22 1 0.0180 -14.6341 -2.8433 23 1 0.7222 -12.5971 -3.9547 24 6 2.5391 -8.9133 1.1999 25 6 3.0600 -7.6343 1.1971 26 7 4.3197 -2.8725 -0.0008 27 6 4.6345 -1.5850 -0.0008 28 8 5.9290 -1.1893 -0.0004 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 4.3865 1.4388 -0.0011 33 1 1.8606 -4.9368 -0.0005 34 1 4.4915 -5.4496 0.8892 35 1 4.4913 -5.4497 -0.8908 36 1 3.2625 -7.1306 -2.1342 37 1 2.3434 -9.4134 -2.1403 38 1 0.6885 -14.3383 -0.2028 39 1 2.3340 -9.4114 2.1360 40 1 3.2623 -7.1321 2.1316 41 1 6.3055 -1.0744 -0.8837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728567513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = 93.793282 kcal Electronic energy + Delta-G solvation = -27334.186511 eV Core-core repulsion = 23217.801005 eV Total energy + Delta-G solvation = -4116.385506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.19148 -39.63501 -39.16038 -38.12910 -36.97805 -34.91919 -33.88354 -32.59603 -32.41527 -30.65863 -30.28139 -28.90800 -27.32564 -25.89142 -24.76750 -24.27263 -22.66495 -22.08162 -21.32791 -20.66361 -19.31283 -18.59953 -18.09785 -17.55662 -17.11994 -16.76045 -16.32061 -15.66809 -15.12638 -15.01564 -14.84122 -14.58111 -14.47199 -14.28176 -14.09638 -13.67472 -13.53948 -13.17523 -12.97266 -12.81364 -12.70539 -12.35213 -12.16148 -11.82571 -11.72623 -11.38905 -11.13788 -10.95587 -10.85489 -10.80270 -10.72881 -10.50545 -10.04471 -9.44662 -9.40222 -9.08754 -8.93795 -8.31299 -8.08948 -7.36888 -6.55160 -4.13953 0.42881 1.14986 1.71337 2.05304 2.11191 2.17493 2.84416 3.06990 3.08138 3.12897 3.23985 3.63374 3.88557 3.89002 4.33042 4.43379 4.50790 4.68982 4.79192 4.94063 4.99373 5.08378 5.12934 5.20181 5.21410 5.38899 5.47088 5.63532 5.77599 5.86232 6.01132 6.09917 6.29638 6.32338 6.56817 6.67002 6.77926 6.89439 6.93429 7.01539 7.11373 7.22240 7.24113 7.32823 7.42423 7.69004 7.89472 8.19918 8.90065 9.57907 10.62241 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.001887 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.174240 B =14831.060657 C =15304.969151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.390 5.390 3 N -0.262 5.262 4 C 0.121 3.879 5 C -0.356 4.356 6 C 0.401 3.599 7 N -0.603 5.603 8 C 0.631 3.369 9 N -0.675 5.675 10 C 0.195 3.805 11 C -0.219 4.219 12 C -0.047 4.047 13 C -0.238 4.238 14 C 0.162 3.838 15 O -0.172 6.172 16 C -0.394 4.394 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.858 5.858 20 Si 0.943 3.057 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.196 4.196 25 C -0.051 4.051 26 N -0.597 5.597 27 C 0.488 3.512 28 O -0.472 6.472 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.198 0.802 33 H 0.418 0.582 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.272 0.728 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 25.038 -1.890 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.181 5.181 3 N -0.075 5.075 4 C -0.077 4.077 5 C -0.373 4.373 6 C 0.151 3.849 7 N -0.339 5.339 8 C 0.271 3.729 9 N -0.311 5.311 10 C 0.072 3.928 11 C -0.221 4.221 12 C -0.066 4.066 13 C -0.257 4.257 14 C 0.107 3.893 15 O -0.074 6.074 16 C -0.470 4.470 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.492 5.492 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.215 4.215 25 C -0.070 4.070 26 N -0.331 5.331 27 C 0.288 3.712 28 O -0.280 6.280 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.215 0.785 33 H 0.257 0.743 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 3.612 24.516 -1.057 24.803 hybrid contribution 0.313 -0.406 -1.314 1.411 sum 3.926 24.109 -2.371 24.542 Atomic orbital electron populations 1.21837 0.73035 1.04564 1.03407 1.48198 1.06340 1.00014 1.63523 1.76958 1.01968 1.06948 1.21607 1.23661 0.95103 0.92702 0.96237 1.19997 0.94981 0.95971 1.26336 1.18518 0.87945 0.87366 0.91057 1.66851 1.35100 0.99606 1.32371 1.18641 0.82079 0.86879 0.85316 1.44872 1.11215 0.99186 1.75798 1.20035 0.87005 0.83553 1.02158 1.19175 1.13261 0.95895 0.93746 1.20639 0.95640 0.93921 0.96404 1.21157 1.09514 0.96552 0.98502 1.19451 0.90227 0.86283 0.93326 1.83977 1.68545 1.21743 1.33183 1.21362 1.47542 0.95009 0.83038 0.88883 1.25332 0.96298 0.95436 0.99432 1.70033 1.41265 1.10821 1.27120 0.85686 0.78508 0.79152 0.79953 1.19764 1.20179 1.19135 1.20215 1.08856 0.96128 0.96321 1.20541 0.96252 0.93582 0.96600 1.67428 1.20811 1.17743 1.27160 1.18499 0.83692 0.85368 0.83649 1.84611 1.21682 1.87316 1.34391 0.90956 0.89046 0.89298 0.78535 0.74325 0.91186 0.91277 0.87379 0.85398 0.91843 0.86340 0.86914 0.72630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.86 11.47 59.84 0.69 1.55 16 2 N -0.39 -4.39 4.05 -67.24 -0.27 -4.66 16 3 N -0.26 -2.80 12.45 30.82 0.38 -2.42 16 4 C 0.12 1.08 12.05 -17.09 -0.21 0.88 16 5 C -0.36 -3.99 6.19 -106.82 -0.66 -4.65 16 6 C 0.40 5.17 8.04 -156.24 -1.26 3.92 16 7 N -0.60 -8.38 10.48 -13.30 -0.14 -8.52 16 8 C 0.63 8.68 8.41 -322.78 -2.71 5.96 16 9 N -0.68 -8.82 5.70 -63.48 -0.36 -9.19 16 10 C 0.19 2.56 5.74 -5.19 -0.03 2.53 16 11 C -0.22 -3.41 5.25 -104.58 -0.55 -3.96 16 12 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 13 C -0.24 -4.86 9.17 -39.39 -0.36 -5.22 16 14 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 15 O -0.17 -4.74 9.76 0.05 0.00 -4.74 16 16 C -0.39 -10.63 9.49 30.89 0.29 -10.33 16 17 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 20 Si 0.94 19.92 29.55 -169.99 -5.02 14.90 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 24 C -0.20 -3.91 9.99 -39.39 -0.39 -4.30 16 25 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 26 N -0.60 -7.82 9.55 -13.73 -0.13 -7.95 16 27 C 0.49 5.39 7.89 -16.33 -0.13 5.26 16 28 O -0.47 -3.68 13.58 -17.78 -0.24 -3.92 16 29 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.42 5.40 8.57 -40.82 -0.35 5.05 16 34 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 35 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.41 0.97 9.06 45.56 0.41 1.39 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -33.60 364.93 -9.41 -43.01 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -3.44 Total: 8.09 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -6.44 Total: -6.33 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.24 Total: -56.51 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.24 Total: -8.66 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.60 -9.41 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728567513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.800 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds