Wall clock time and date at job start Sat Apr 11 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40047 * 125.87296 * 2 1 4 4 C 1.30227 * 109.72322 * 180.02562 * 3 2 1 5 5 C 1.41257 * 108.46879 * 0.02562 * 4 3 2 6 6 C 1.36335 * 125.86527 * 180.02562 * 2 1 3 7 7 N 1.33137 * 134.54951 * 0.29245 * 6 2 1 8 8 C 1.32207 * 120.57250 * 180.20240 * 7 6 2 9 9 N 1.38385 * 118.79088 * 179.71680 * 8 7 6 10 10 C 1.46508 * 119.99957 * 179.73494 * 9 8 7 11 11 C 1.50698 * 109.46930 * 180.02562 * 10 9 8 12 12 C 1.38297 * 119.93202 * 89.99834 * 11 10 9 13 13 C 1.38101 * 120.07230 * 180.02562 * 12 11 10 14 14 C 1.38886 * 119.92536 * 359.97438 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47448 * 89.99502 * 20 18 16 22 22 H 1.48501 * 109.47175 * 209.99712 * 20 18 16 23 23 H 1.48506 * 109.47415 * 329.99678 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38106 * 119.92542 * 359.44577 * 24 14 13 26 26 N 1.32824 * 122.41639 * 359.44224 * 8 7 6 27 27 C 1.32548 * 121.16298 * 0.27431 * 26 8 7 28 28 O 1.35364 * 120.73470 * 179.97438 * 27 26 8 29 29 H 1.09008 * 109.47003 * 89.97160 * 1 2 3 30 30 H 1.09000 * 109.47535 * 209.97256 * 1 2 3 31 31 H 1.08998 * 109.47150 * 329.97842 * 1 2 3 32 32 H 1.07999 * 125.76425 * 179.97438 * 4 3 2 33 33 H 0.96994 * 119.99958 * 359.73220 * 9 8 7 34 34 H 1.09003 * 109.46889 * 59.99802 * 10 9 8 35 35 H 1.09004 * 109.46798 * 299.99959 * 10 9 8 36 36 H 1.07999 * 119.96698 * 0.02562 * 12 11 10 37 37 H 1.07992 * 120.03608 * 179.97438 * 13 12 11 38 38 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 40 40 H 1.07997 * 119.96326 * 180.27708 * 25 24 14 41 41 H 0.96696 * 114.00171 * 90.00098 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2856 1.1348 0.0000 4 6 3.5365 0.7726 -0.0005 5 6 3.5937 -0.6388 -0.0015 6 6 2.2637 -1.1049 -0.0005 7 7 2.0420 -2.4176 -0.0059 8 6 3.0524 -3.2702 -0.0007 9 7 2.7797 -4.6269 -0.0006 10 6 3.8792 -5.5952 -0.0007 11 6 3.3171 -6.9935 -0.0013 12 6 3.0600 -7.6333 -1.2000 13 6 2.5444 -8.9145 -1.2039 14 6 2.2847 -9.5605 -0.0022 15 8 1.7784 -10.8200 -0.0027 16 6 1.6579 -11.4308 -1.1986 17 1 1.8810 -10.8898 -2.1063 18 6 1.2474 -12.7537 -1.2632 19 7 0.9760 -13.4130 -0.1576 20 14 1.0811 -13.6001 -2.9201 21 1 2.3710 -14.2422 -3.2797 22 1 0.0180 -14.6341 -2.8433 23 1 0.7222 -12.5971 -3.9547 24 6 2.5391 -8.9133 1.1999 25 6 3.0600 -7.6343 1.1971 26 7 4.3197 -2.8725 -0.0008 27 6 4.6345 -1.5850 -0.0008 28 8 5.9290 -1.1893 -0.0004 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 4.3865 1.4388 -0.0011 33 1 1.8606 -4.9368 -0.0005 34 1 4.4915 -5.4496 0.8892 35 1 4.4913 -5.4497 -0.8908 36 1 3.2625 -7.1306 -2.1342 37 1 2.3434 -9.4134 -2.1403 38 1 0.6885 -14.3383 -0.2028 39 1 2.3340 -9.4114 2.1360 40 1 3.2623 -7.1321 2.1316 41 1 6.3055 -1.0744 -0.8837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728567513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:48 Heat of formation + Delta-G solvation = 69.639032 kcal Electronic energy + Delta-G solvation = -27335.233918 eV Core-core repulsion = 23217.801005 eV Total energy + Delta-G solvation = -4117.432913 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.01306 -40.89382 -40.36534 -39.00532 -38.41479 -36.05625 -34.63168 -34.30041 -33.42653 -31.93678 -31.75974 -29.99915 -28.04666 -27.60312 -26.17730 -25.08663 -23.65199 -23.61043 -22.27374 -21.91598 -20.15180 -19.85703 -19.45729 -18.83309 -18.34620 -17.69763 -17.19975 -16.51284 -16.44964 -16.39729 -16.09186 -15.73544 -15.58515 -15.39392 -15.35534 -15.10943 -14.86706 -14.41042 -14.25584 -13.81612 -13.58988 -13.54790 -13.23124 -13.14650 -12.99136 -12.61748 -12.46540 -12.37217 -12.23006 -12.11154 -11.96870 -11.64158 -11.22207 -10.93574 -10.81839 -10.31248 -9.88564 -9.81125 -9.03242 -9.03206 -8.48787 -6.16990 -0.37701 0.25263 0.48986 0.58236 1.04204 1.35489 1.43990 1.44363 1.52578 1.92679 2.16756 2.40130 2.72986 2.83651 3.14199 3.15459 3.48466 3.53590 3.65199 3.86607 4.02536 4.03658 4.04320 4.17869 4.38505 4.46478 4.48835 4.56963 4.65381 4.69155 4.81415 4.88402 5.04798 5.14309 5.26833 5.31116 5.47364 5.52054 5.68871 5.75228 5.79692 5.97224 6.01090 6.16557 6.36842 6.46852 6.60838 6.95961 7.26216 7.75321 8.74022 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.001887 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.174240 B =14831.060657 C =15304.969151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.396 5.396 3 N -0.280 5.280 4 C 0.134 3.866 5 C -0.362 4.362 6 C 0.375 3.625 7 N -0.621 5.621 8 C 0.623 3.377 9 N -0.677 5.677 10 C 0.206 3.794 11 C -0.185 4.185 12 C -0.042 4.042 13 C -0.245 4.245 14 C 0.123 3.877 15 O -0.229 6.229 16 C -0.413 4.413 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.919 5.919 20 Si 1.018 2.982 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.252 1.252 24 C -0.207 4.207 25 C -0.042 4.042 26 N -0.613 5.613 27 C 0.497 3.503 28 O -0.468 6.468 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.239 0.761 33 H 0.418 0.582 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.141 0.859 37 H 0.120 0.880 38 H 0.273 0.727 39 H 0.114 0.886 40 H 0.146 0.854 41 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 28.688 -3.073 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.186 5.186 3 N -0.093 5.093 4 C -0.063 4.063 5 C -0.379 4.379 6 C 0.125 3.875 7 N -0.358 5.358 8 C 0.262 3.738 9 N -0.314 5.314 10 C 0.083 3.917 11 C -0.187 4.187 12 C -0.060 4.060 13 C -0.264 4.264 14 C 0.072 3.928 15 O -0.135 6.135 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.221 4.221 19 N -0.557 5.557 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.197 1.197 23 H -0.176 1.176 24 C -0.226 4.226 25 C -0.060 4.060 26 N -0.349 5.349 27 C 0.297 3.703 28 O -0.280 6.280 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.255 0.745 33 H 0.256 0.744 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.159 0.841 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.164 0.836 41 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 5.409 28.284 -2.259 28.885 hybrid contribution -0.051 -1.024 -0.848 1.330 sum 5.358 27.260 -3.106 27.954 Atomic orbital electron populations 1.22044 0.71709 1.05346 1.04301 1.48549 1.07343 0.99736 1.62975 1.76964 1.02730 1.06970 1.22602 1.24314 0.95621 0.92248 0.94136 1.20238 0.94436 0.97053 1.26163 1.18850 0.89316 0.87448 0.91853 1.66787 1.35560 1.00305 1.33114 1.18679 0.82513 0.86845 0.85728 1.44607 1.10930 0.99176 1.76657 1.19931 0.86919 0.81564 1.03264 1.19519 1.09508 0.96813 0.92815 1.20958 0.94191 0.92449 0.98442 1.21253 1.09936 0.97926 0.97326 1.20006 0.91693 0.85663 0.95404 1.83948 1.71900 1.24017 1.33650 1.21835 1.47766 0.95717 0.83606 0.87870 1.26601 0.95830 0.95934 1.03705 1.70179 1.44289 1.11329 1.29853 0.84586 0.78757 0.77985 0.74904 1.18808 1.19717 1.17588 1.20448 1.09303 0.97469 0.95383 1.20895 0.94447 0.92069 0.98599 1.67466 1.20351 1.18778 1.28353 1.18577 0.84714 0.84799 0.82182 1.84578 1.20014 1.86903 1.36474 0.89998 0.89231 0.87576 0.74509 0.74402 0.90322 0.90097 0.84145 0.86180 0.91803 0.86791 0.83603 0.69743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.49 11.47 127.77 1.47 2.96 16 2 N -0.40 -8.25 4.05 -366.66 -1.48 -9.73 16 3 N -0.28 -5.33 12.45 -56.41 -0.70 -6.03 16 4 C 0.13 1.97 12.05 85.67 1.03 3.00 16 5 C -0.36 -7.17 6.19 -21.29 -0.13 -7.30 16 6 C 0.38 9.04 8.04 134.17 1.08 10.12 16 7 N -0.62 -16.35 10.48 -196.01 -2.05 -18.41 16 8 C 0.62 15.77 8.41 261.48 2.20 17.97 16 9 N -0.68 -15.93 5.70 -354.74 -2.02 -17.95 16 10 C 0.21 4.66 5.74 85.63 0.49 5.15 16 11 C -0.19 -5.22 5.25 -19.84 -0.10 -5.33 16 12 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 13 C -0.25 -10.06 9.17 22.39 0.21 -9.86 16 14 C 0.12 5.90 6.65 22.58 0.15 6.05 16 15 O -0.23 -13.46 9.76 -22.72 -0.22 -13.68 16 16 C -0.41 -23.51 9.49 67.92 0.64 -22.87 16 17 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 18 C -0.02 -1.28 5.49 84.84 0.47 -0.81 16 19 N -0.92 -55.67 13.67 21.62 0.30 -55.37 16 20 Si 1.02 42.07 29.55 68.60 2.03 44.09 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 24 C -0.21 -8.36 9.99 22.39 0.22 -8.14 16 25 C -0.04 -1.29 9.69 22.25 0.22 -1.08 16 26 N -0.61 -14.38 9.55 -310.24 -2.96 -17.34 16 27 C 0.50 9.47 7.89 85.18 0.67 10.14 16 28 O -0.47 -5.52 13.58 -86.54 -1.18 -6.70 16 29 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.24 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.42 9.89 8.57 -92.71 -0.79 9.10 16 34 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 35 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 36 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 37 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.44 0.27 9.06 -74.06 -0.67 -0.40 16 Total: -1.00 -78.14 364.93 0.19 -77.95 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.34 Total: 24.27 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 8.82 Total: -1.10 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -8.93 Total: -124.83 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.40 Total: -20.38 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -78.14 0.19 -77.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728567513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.592 kcal (2) G-P(sol) polarization free energy of solvation -78.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds