Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99859 * 2 1 4 4 S 1.65600 * 120.00000 * 179.97438 * 2 1 3 5 5 O 1.42095 * 106.40361 * 336.46057 * 4 2 1 6 6 O 1.42102 * 106.39998 * 203.54119 * 4 2 1 7 7 C 1.76204 * 107.21863 * 90.00259 * 4 2 1 8 8 C 1.39869 * 126.04131 * 90.01878 * 7 4 2 9 9 N 1.30833 * 108.20296 * 179.97438 * 8 7 4 10 10 N 1.40092 * 108.20638 * 0.02562 * 9 8 7 11 11 C 1.46498 * 126.03815 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.47075 * 275.00028 * 11 10 9 13 13 C 1.46904 * 110.99876 * 169.99929 * 12 11 10 14 14 C 1.50705 * 109.47200 * 284.31210 * 13 12 11 15 15 H 1.08001 * 119.99500 * 4.66771 * 14 13 12 16 16 C 1.37874 * 119.99840 * 184.66239 * 14 13 12 17 17 N 1.31511 * 120.00012 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99946 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46986 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47093 * 120.00126 * 18 16 14 21 21 H 1.48496 * 109.47697 * 240.00366 * 18 16 14 22 22 C 1.46896 * 111.00063 * 293.95147 * 12 11 10 23 23 C 1.53002 * 109.46953 * 164.03419 * 22 12 11 24 24 C 1.47206 * 109.47087 * 179.41521 * 23 22 12 25 25 N 6.21683 * 45.99080 * 271.38465 * 2 1 3 26 26 C 1.34944 * 107.92180 * 359.97438 * 10 9 8 27 27 H 1.09003 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47007 * 300.00142 * 1 2 3 29 29 H 1.09006 * 109.47190 * 60.00184 * 1 2 3 30 30 H 1.09006 * 109.47259 * 269.99777 * 3 2 1 31 31 H 1.08999 * 109.47381 * 29.99365 * 3 2 1 32 32 H 1.08997 * 109.47350 * 149.99819 * 3 2 1 33 33 H 1.08002 * 125.89410 * 359.72309 * 8 7 4 34 34 H 1.09005 * 109.46848 * 35.00079 * 11 10 9 35 35 H 1.08996 * 109.47164 * 154.99736 * 11 10 9 36 36 H 1.09005 * 109.46944 * 44.31119 * 13 12 11 37 37 H 1.09001 * 109.47248 * 164.31250 * 13 12 11 38 38 H 0.97008 * 120.00066 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47270 * 284.03488 * 22 12 11 40 40 H 1.09004 * 109.47130 * 44.03509 * 22 12 11 41 41 H 1.09001 * 109.46886 * 299.41321 * 23 22 12 42 42 H 1.08999 * 109.47419 * 59.41391 * 23 22 12 43 43 H 1.08001 * 126.12406 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4114 -2.4062 0.5455 6 8 3.5760 -1.1565 0.5450 7 6 2.5539 -1.8866 -1.6822 8 6 3.6554 -1.5327 -2.4683 9 7 3.4929 -2.0532 -3.6576 10 7 2.2807 -2.7554 -3.6661 11 6 1.7169 -3.4878 -4.8027 12 7 0.9655 -2.5603 -5.6588 13 6 0.5865 -3.2020 -6.9248 14 6 1.7925 -3.2896 -7.8243 15 1 2.7604 -2.9763 -7.4618 16 6 1.6601 -3.7698 -9.1100 17 7 0.4813 -4.1509 -9.5514 18 14 3.1547 -3.8777 -10.2252 19 1 4.3529 -3.3905 -9.4956 20 1 3.3654 -5.2893 -10.6353 21 1 2.9342 -3.0396 -11.4311 22 6 -0.2158 -2.0377 -4.9592 23 6 -0.7417 -0.8050 -5.6972 24 6 -1.9337 -0.2896 -5.0041 25 7 -2.8543 0.1080 -4.4700 26 6 1.7241 -2.6379 -2.4424 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 2.3792 1.5834 -1.0277 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1385 0.5138 33 1 4.4931 -0.9301 -2.1498 34 1 2.5235 -3.9415 -5.3787 35 1 1.0485 -4.2673 -4.4372 36 1 0.2087 -4.2048 -6.7250 37 1 -0.1890 -2.6121 -7.4133 38 1 0.3881 -4.4884 -10.4561 39 1 -0.9909 -2.8036 -4.9330 40 1 0.0575 -1.7623 -3.9406 41 1 0.0299 -0.0352 -5.7143 42 1 -1.0052 -1.0781 -6.7190 43 1 0.7847 -3.0670 -2.1264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738009967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = 50.371299 kcal Electronic energy + Delta-G solvation = -27878.362908 eV Core-core repulsion = 23895.538435 eV Total energy + Delta-G solvation = -3982.824473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.28483 -37.78684 -37.28943 -36.31745 -36.30553 -35.85122 -33.02643 -32.60318 -30.83158 -30.31575 -28.31759 -27.33607 -25.55514 -24.81727 -23.42042 -21.85937 -21.50984 -20.48719 -18.98198 -18.06479 -17.56211 -17.41012 -16.79845 -16.20040 -15.89500 -15.69185 -15.04051 -14.91370 -14.69124 -14.57508 -14.47282 -14.23672 -13.64052 -13.19912 -13.13010 -13.10155 -13.07761 -12.80895 -12.57283 -12.42067 -12.29595 -12.18285 -12.10779 -11.76675 -11.75023 -11.72246 -11.54733 -11.34697 -11.06333 -10.83830 -10.64309 -10.57395 -10.13595 -9.70746 -9.48450 -9.36808 -9.17700 -8.66024 -7.89650 -6.25350 -4.28512 0.38488 1.55922 2.32572 2.48674 2.77809 2.84837 3.01909 3.19862 3.29155 3.34106 3.75000 3.88994 4.13441 4.28035 4.54549 4.59109 4.60353 4.77009 4.97760 5.02009 5.10431 5.12173 5.16564 5.22803 5.36214 5.39896 5.48473 5.54506 5.56348 5.57194 5.71261 5.71982 5.89237 6.00137 6.28854 6.39212 6.63663 6.67848 6.94456 7.41504 7.53504 7.58564 7.61634 7.81290 8.11931 8.79982 9.38397 10.84621 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.003328 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.887467 B = 8412.065269 C = 9797.985513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.007 6.007 3 C 0.085 3.915 4 S 2.727 3.273 5 O -0.966 6.966 6 O -0.961 6.961 7 C -0.822 4.822 8 C 0.118 3.882 9 N -0.262 5.262 10 N -0.335 5.335 11 C 0.294 3.706 12 N -0.541 5.541 13 C 0.195 3.805 14 C -0.517 4.517 15 H 0.068 0.932 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.052 3.948 23 C -0.024 4.024 24 C 0.216 3.784 25 N -0.451 5.451 26 C 0.171 3.829 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.192 0.808 34 H 0.127 0.873 35 H 0.069 0.931 36 H -0.001 1.001 37 H 0.048 0.952 38 H 0.264 0.736 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 7.020 15.921 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.845 5.845 3 C -0.061 4.061 4 S 2.816 3.184 5 O -0.956 6.956 6 O -0.951 6.951 7 C -0.922 4.922 8 C -0.073 4.073 9 N -0.080 5.080 10 N -0.113 5.113 11 C 0.085 3.915 12 N -0.267 5.267 13 C 0.071 3.929 14 C -0.555 4.555 15 H 0.086 0.914 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.078 4.078 23 C -0.065 4.065 24 C -0.101 4.101 25 N -0.129 5.129 26 C 0.015 3.985 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.209 0.791 34 H 0.145 0.855 35 H 0.087 0.913 36 H 0.017 0.983 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.243 7.252 15.761 17.351 hybrid contribution 0.032 -0.647 -0.872 1.086 sum 0.275 6.605 14.889 16.290 Atomic orbital electron populations 1.21551 0.78253 1.03787 1.02289 1.57299 1.15258 1.21872 1.90106 1.21572 0.97180 0.85018 1.02320 1.00775 0.72691 0.71888 0.73013 1.93547 1.66453 1.58642 1.76979 1.93537 1.40226 1.84517 1.76822 1.31419 1.07881 1.25144 1.27787 1.23483 0.96736 0.97422 0.89646 1.77594 0.99409 1.10944 1.20046 1.49636 1.14943 1.37417 1.09271 1.22417 0.97854 0.87925 0.83354 1.61991 1.20792 1.38295 1.05615 1.19891 0.97743 0.92670 0.82612 1.21151 0.94712 1.42582 0.97055 0.91372 1.24952 0.96166 0.95087 0.97963 1.69935 1.22642 1.43046 1.17773 0.86425 0.82809 0.77664 0.80486 1.19474 1.21058 1.20914 1.21997 0.93056 0.95540 0.97175 1.19298 0.89054 0.98606 0.99498 1.29369 0.94413 0.93052 0.93286 1.81184 1.11757 1.09795 1.10143 1.22415 0.97284 0.93510 0.85299 0.89704 0.91725 0.92157 0.92517 0.90785 0.89785 0.79101 0.85491 0.91291 0.98306 0.93414 0.92671 0.93934 0.91761 0.86725 0.86209 0.79895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.67 59.85 0.64 1.32 16 2 N -1.01 -9.21 3.58 -129.20 -0.46 -9.67 16 3 C 0.08 0.62 10.70 59.85 0.64 1.26 16 4 S 2.73 31.46 5.83 -107.50 -0.63 30.83 16 5 O -0.97 -13.11 16.41 -57.17 -0.94 -14.05 16 6 O -0.96 -13.04 16.47 -57.17 -0.94 -13.98 16 7 C -0.82 -10.05 6.17 -40.01 -0.25 -10.30 16 8 C 0.12 1.54 11.81 -17.37 -0.21 1.34 16 9 N -0.26 -4.13 12.58 30.62 0.39 -3.75 16 10 N -0.34 -4.85 3.51 -64.38 -0.23 -5.08 16 11 C 0.29 4.46 6.00 -63.32 -0.38 4.08 16 12 N -0.54 -8.93 4.52 -239.98 -1.08 -10.02 16 13 C 0.19 4.02 4.59 -4.97 -0.02 4.00 16 14 C -0.52 -12.45 8.61 -34.44 -0.30 -12.74 16 15 H 0.07 1.68 7.66 -52.49 -0.40 1.28 16 16 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -23.70 13.29 55.43 0.74 -22.96 16 18 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.05 0.69 4.84 -3.83 -0.02 0.67 16 23 C -0.02 -0.30 5.78 -29.51 -0.17 -0.47 16 24 C 0.22 2.86 15.43 -20.75 -0.32 2.54 16 25 N -0.45 -6.87 18.54 42.16 0.78 -6.09 16 26 C 0.17 2.09 9.46 -17.22 -0.16 1.93 16 27 H 0.08 0.68 6.91 -51.93 -0.36 0.32 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.08 0.62 7.02 -51.93 -0.36 0.26 16 33 H 0.19 1.96 8.06 -52.49 -0.42 1.53 16 34 H 0.13 2.16 7.32 -51.93 -0.38 1.78 16 35 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 36 H 0.00 -0.02 8.00 -51.93 -0.42 -0.43 16 37 H 0.05 1.03 6.24 -51.93 -0.32 0.71 16 38 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 39 H 0.04 0.55 8.05 -51.93 -0.42 0.13 16 40 H 0.06 0.77 5.86 -51.93 -0.30 0.47 16 41 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.12 1.58 6.52 -51.93 -0.34 1.24 16 43 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -32.07 381.86 -8.10 -40.17 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.82 Total: -1.13 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.64 Total: -4.94 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.13 Total: -57.56 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.88 Total: -28.03 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 31.46 SS G_CDS: -0.63 Total: 30.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.07 -8.10 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738009967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.546 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds