Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99859 * 2 1 4 4 S 1.65600 * 120.00000 * 179.97438 * 2 1 3 5 5 O 1.42095 * 106.40361 * 336.46057 * 4 2 1 6 6 O 1.42102 * 106.39998 * 203.54119 * 4 2 1 7 7 C 1.76204 * 107.21863 * 90.00259 * 4 2 1 8 8 C 1.39869 * 126.04131 * 90.01878 * 7 4 2 9 9 N 1.30833 * 108.20296 * 179.97438 * 8 7 4 10 10 N 1.40092 * 108.20638 * 0.02562 * 9 8 7 11 11 C 1.46498 * 126.03815 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.47075 * 275.00028 * 11 10 9 13 13 C 1.46904 * 110.99876 * 169.99929 * 12 11 10 14 14 C 1.50705 * 109.47200 * 284.31210 * 13 12 11 15 15 H 1.08001 * 119.99500 * 4.66771 * 14 13 12 16 16 C 1.37874 * 119.99840 * 184.66239 * 14 13 12 17 17 N 1.31511 * 120.00012 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99946 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46986 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47093 * 120.00126 * 18 16 14 21 21 H 1.48496 * 109.47697 * 240.00366 * 18 16 14 22 22 C 1.46896 * 111.00063 * 293.95147 * 12 11 10 23 23 C 1.53002 * 109.46953 * 164.03419 * 22 12 11 24 24 C 1.47206 * 109.47087 * 179.41521 * 23 22 12 25 25 N 6.21683 * 45.99080 * 271.38465 * 2 1 3 26 26 C 1.34944 * 107.92180 * 359.97438 * 10 9 8 27 27 H 1.09003 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47007 * 300.00142 * 1 2 3 29 29 H 1.09006 * 109.47190 * 60.00184 * 1 2 3 30 30 H 1.09006 * 109.47259 * 269.99777 * 3 2 1 31 31 H 1.08999 * 109.47381 * 29.99365 * 3 2 1 32 32 H 1.08997 * 109.47350 * 149.99819 * 3 2 1 33 33 H 1.08002 * 125.89410 * 359.72309 * 8 7 4 34 34 H 1.09005 * 109.46848 * 35.00079 * 11 10 9 35 35 H 1.08996 * 109.47164 * 154.99736 * 11 10 9 36 36 H 1.09005 * 109.46944 * 44.31119 * 13 12 11 37 37 H 1.09001 * 109.47248 * 164.31250 * 13 12 11 38 38 H 0.97008 * 120.00066 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47270 * 284.03488 * 22 12 11 40 40 H 1.09004 * 109.47130 * 44.03509 * 22 12 11 41 41 H 1.09001 * 109.46886 * 299.41321 * 23 22 12 42 42 H 1.08999 * 109.47419 * 59.41391 * 23 22 12 43 43 H 1.08001 * 126.12406 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4114 -2.4062 0.5455 6 8 3.5760 -1.1565 0.5450 7 6 2.5539 -1.8866 -1.6822 8 6 3.6554 -1.5327 -2.4683 9 7 3.4929 -2.0532 -3.6576 10 7 2.2807 -2.7554 -3.6661 11 6 1.7169 -3.4878 -4.8027 12 7 0.9655 -2.5603 -5.6588 13 6 0.5865 -3.2020 -6.9248 14 6 1.7925 -3.2896 -7.8243 15 1 2.7604 -2.9763 -7.4618 16 6 1.6601 -3.7698 -9.1100 17 7 0.4813 -4.1509 -9.5514 18 14 3.1547 -3.8777 -10.2252 19 1 4.3529 -3.3905 -9.4956 20 1 3.3654 -5.2893 -10.6353 21 1 2.9342 -3.0396 -11.4311 22 6 -0.2158 -2.0377 -4.9592 23 6 -0.7417 -0.8050 -5.6972 24 6 -1.9337 -0.2896 -5.0041 25 7 -2.8543 0.1080 -4.4700 26 6 1.7241 -2.6379 -2.4424 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 2.3792 1.5834 -1.0277 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1385 0.5138 33 1 4.4931 -0.9301 -2.1498 34 1 2.5235 -3.9415 -5.3787 35 1 1.0485 -4.2673 -4.4372 36 1 0.2087 -4.2048 -6.7250 37 1 -0.1890 -2.6121 -7.4133 38 1 0.3881 -4.4884 -10.4561 39 1 -0.9909 -2.8036 -4.9330 40 1 0.0575 -1.7623 -3.9406 41 1 0.0299 -0.0352 -5.7143 42 1 -1.0052 -1.0781 -6.7190 43 1 0.7847 -3.0670 -2.1264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738009967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = 27.382324 kcal Electronic energy + Delta-G solvation = -27879.359785 eV Core-core repulsion = 23895.538435 eV Total energy + Delta-G solvation = -3983.821350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.32946 -39.02634 -38.27461 -37.48625 -37.02229 -36.80236 -34.80969 -33.73292 -32.06485 -31.38372 -28.95139 -28.89403 -26.73441 -25.48287 -24.96134 -22.85662 -22.71565 -21.69794 -19.87556 -19.04953 -18.62359 -18.47823 -18.33831 -17.13632 -17.01434 -16.82776 -16.37276 -16.09878 -15.95375 -15.48515 -15.32165 -15.27750 -14.84207 -14.42806 -14.32227 -14.09723 -13.93089 -13.87276 -13.54239 -13.50378 -13.45503 -13.25106 -13.22106 -13.13616 -12.73532 -12.70958 -12.53920 -12.52952 -12.49538 -12.40796 -12.12471 -11.68236 -11.59657 -11.33375 -10.70684 -10.56303 -10.32116 -9.96116 -9.24304 -8.17405 -6.24006 -0.50904 0.56700 1.30634 1.41975 1.43041 1.47800 1.57567 1.69916 1.77667 2.20037 2.42909 2.77061 2.85011 3.16366 3.19696 3.44896 3.65089 3.73464 3.94567 3.95724 3.99071 4.16190 4.38673 4.41713 4.45601 4.57537 4.59292 4.63238 4.80744 4.82562 4.97458 4.99537 5.05192 5.11706 5.13162 5.18296 5.42361 5.62024 5.64767 5.79515 6.02965 6.13977 6.40382 6.54032 6.57012 6.90505 7.45639 8.91993 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.003328 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.887467 B = 8412.065269 C = 9797.985513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.003 6.003 3 C 0.076 3.924 4 S 2.746 3.254 5 O -0.986 6.986 6 O -0.983 6.983 7 C -0.822 4.822 8 C 0.121 3.879 9 N -0.306 5.306 10 N -0.345 5.345 11 C 0.298 3.702 12 N -0.549 5.549 13 C 0.210 3.790 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.016 3.984 17 N -0.926 5.926 18 Si 0.951 3.049 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.054 3.946 23 C -0.015 4.015 24 C 0.241 3.759 25 N -0.482 5.482 26 C 0.173 3.827 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.214 0.786 34 H 0.101 0.899 35 H 0.096 0.904 36 H -0.015 1.015 37 H 0.039 0.961 38 H 0.263 0.737 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.113 0.887 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 7.931 17.148 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.844 5.844 3 C -0.069 4.069 4 S 2.835 3.165 5 O -0.976 6.976 6 O -0.973 6.973 7 C -0.922 4.922 8 C -0.069 4.069 9 N -0.125 5.125 10 N -0.122 5.122 11 C 0.088 3.912 12 N -0.275 5.275 13 C 0.084 3.916 14 C -0.556 4.556 15 H 0.075 0.925 16 C -0.183 4.183 17 N -0.566 5.566 18 Si 0.778 3.222 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.076 4.076 23 C -0.055 4.055 24 C -0.077 4.077 25 N -0.160 5.160 26 C 0.019 3.981 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.230 0.770 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.003 0.997 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.143 0.857 42 H 0.131 0.869 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.073 8.170 17.009 18.869 hybrid contribution 0.109 -0.868 -1.144 1.440 sum 0.182 7.302 15.865 17.466 Atomic orbital electron populations 1.21738 0.77260 1.04081 1.03523 1.57140 1.15841 1.21550 1.89826 1.21782 0.97352 0.84574 1.03158 1.00126 0.72021 0.71978 0.72414 1.93517 1.66809 1.59980 1.77326 1.93506 1.41601 1.84958 1.77220 1.31582 1.07607 1.25038 1.27936 1.23924 0.97393 0.96625 0.89002 1.77559 1.00639 1.12585 1.21686 1.49472 1.15059 1.38042 1.09634 1.22265 0.97282 0.88225 0.83466 1.61745 1.22282 1.38331 1.05127 1.19506 0.95944 0.92015 0.84108 1.21430 0.95441 1.41234 0.97514 0.92469 1.25578 0.98059 0.95308 0.99362 1.70013 1.24046 1.44489 1.18063 0.85607 0.80276 0.77437 0.78906 1.19545 1.20982 1.20852 1.22049 0.92069 0.95817 0.97643 1.19226 0.88905 0.98585 0.98819 1.29292 0.93864 0.92108 0.92399 1.81216 1.12647 1.10918 1.11226 1.22941 0.98107 0.92812 0.84268 0.89915 0.90086 0.91401 0.91787 0.88675 0.90059 0.76996 0.88059 0.88688 0.99693 0.94291 0.92774 0.93098 0.89994 0.85723 0.86894 0.76988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 10.67 127.77 1.36 2.40 16 2 N -1.00 -15.94 3.58 -562.68 -2.02 -17.96 16 3 C 0.08 0.92 10.70 127.77 1.37 2.29 16 4 S 2.75 58.42 5.83 -56.49 -0.33 58.09 16 5 O -0.99 -25.01 16.41 -128.00 -2.10 -27.11 16 6 O -0.98 -25.30 16.47 -128.00 -2.11 -27.41 16 7 C -0.82 -18.59 6.17 21.99 0.14 -18.45 16 8 C 0.12 3.00 11.81 85.24 1.01 4.01 16 9 N -0.31 -9.44 12.58 -57.03 -0.72 -10.16 16 10 N -0.34 -9.53 3.51 -357.60 -1.25 -10.78 16 11 C 0.30 8.79 6.00 170.81 1.02 9.81 16 12 N -0.55 -17.63 4.52 -913.15 -4.13 -21.76 16 13 C 0.21 8.64 4.59 85.56 0.39 9.03 16 14 C -0.52 -25.09 8.61 25.60 0.22 -24.87 16 15 H 0.06 2.85 7.66 -2.91 -0.02 2.83 16 16 C 0.02 0.81 5.46 84.65 0.46 1.27 16 17 N -0.93 -49.34 13.29 21.45 0.28 -49.06 16 18 Si 0.95 41.06 29.54 68.60 2.03 43.09 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 22 C 0.05 1.31 4.84 86.30 0.42 1.73 16 23 C -0.02 -0.35 5.78 28.79 0.17 -0.18 16 24 C 0.24 5.90 15.43 89.44 1.38 7.28 16 25 N -0.48 -13.88 18.54 20.01 0.37 -13.51 16 26 C 0.17 3.88 9.46 83.54 0.79 4.67 16 27 H 0.08 1.13 6.91 -2.39 -0.02 1.11 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.09 0.77 8.07 -2.39 -0.02 0.75 16 32 H 0.08 1.05 7.02 -2.39 -0.02 1.03 16 33 H 0.21 4.04 8.06 -2.91 -0.02 4.01 16 34 H 0.10 3.51 7.32 -2.38 -0.02 3.49 16 35 H 0.10 2.28 8.11 -2.39 -0.02 2.26 16 36 H -0.01 -0.64 8.00 -2.38 -0.02 -0.66 16 37 H 0.04 1.68 6.24 -2.39 -0.01 1.67 16 38 H 0.26 13.46 8.31 -92.70 -0.77 12.69 16 39 H 0.05 1.19 8.05 -2.39 -0.02 1.17 16 40 H 0.08 1.74 5.86 -2.38 -0.01 1.72 16 41 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.11 2.86 6.52 -2.39 -0.02 2.84 16 43 H 0.21 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -67.99 381.86 -0.21 -68.20 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.03 Total: 9.39 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 8.73 Total: -1.02 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -7.46 Total: -123.22 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -4.21 Total: -54.52 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 58.42 SS G_CDS: -0.33 Total: 58.09 kcal Total: -67.99 -0.21 -68.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738009967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.579 kcal (2) G-P(sol) polarization free energy of solvation -67.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds