Wall clock time and date at job start Sat Apr 11 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34346 * 125.69753 * 2 1 4 4 C 1.38045 * 107.52630 * 180.02562 * 3 2 1 5 5 C 1.43198 * 126.44130 * 180.02562 * 4 3 2 6 6 N 4.70758 * 152.85569 * 0.02562 * 2 1 3 7 7 C 1.41792 * 107.12332 * 0.02562 * 4 3 2 8 8 N 1.39853 * 126.06148 * 180.02562 * 7 4 3 9 9 C 1.34777 * 120.00640 * 179.97438 * 8 7 4 10 10 O 1.21591 * 119.99393 * 0.02562 * 9 8 7 11 11 N 1.34768 * 120.00297 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00179 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47448 * 180.02562 * 12 11 9 14 14 C 1.38299 * 119.93217 * 269.73027 * 13 12 11 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47303 * 60.00249 * 22 20 18 24 24 H 1.48499 * 109.46956 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47359 * 299.99968 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 N 1.30937 * 107.88517 * 0.26471 * 7 4 3 29 29 H 1.08999 * 109.46957 * 89.99710 * 1 2 3 30 30 H 1.08995 * 109.47063 * 209.99984 * 1 2 3 31 31 H 1.09004 * 109.46829 * 329.99988 * 1 2 3 32 32 H 1.08000 * 126.24067 * 0.02562 * 3 2 1 33 33 H 0.97007 * 119.99479 * 0.02562 * 8 7 4 34 34 H 0.97000 * 120.00448 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.46848 * 59.99850 * 12 11 9 36 36 H 1.09001 * 109.46885 * 300.00464 * 12 11 9 37 37 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 38 38 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 39 39 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 40 40 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 41 41 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2490 1.0910 0.0000 4 6 3.5606 0.6605 -0.0006 5 6 4.7280 1.4898 -0.0003 6 7 5.6541 2.1478 0.0010 7 6 3.5346 -0.7572 -0.0016 8 7 4.6499 -1.6009 -0.0019 9 6 4.4833 -2.9384 -0.0023 10 8 3.3631 -3.4113 -0.0029 11 7 5.5581 -3.7514 -0.0031 12 6 5.3769 -5.2052 -0.0042 13 6 6.7247 -5.8795 -0.0043 14 6 7.3396 -6.1925 -1.2029 15 6 8.5771 -6.8052 -1.2064 16 6 9.1989 -7.1177 -0.0045 17 8 10.4126 -7.7259 -0.0047 18 6 11.0113 -7.8978 1.1911 19 1 10.4903 -7.6320 2.0990 20 6 12.2958 -8.4157 1.2552 21 7 12.9304 -8.7398 0.1493 22 14 13.1255 -8.6532 2.9119 23 1 12.3205 -9.5873 3.7393 24 1 14.4839 -9.2178 2.7088 25 1 13.2316 -7.3440 3.6047 26 6 8.5764 -6.8072 1.1974 27 6 7.3413 -6.1894 1.1943 28 7 2.2814 -1.1364 -0.0073 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9141 2.1178 0.0004 33 1 5.5436 -1.2235 -0.0010 34 1 6.4517 -3.3741 -0.0031 35 1 4.8219 -5.5015 -0.8943 36 1 4.8222 -5.5028 0.8857 37 1 6.8531 -5.9537 -2.1372 38 1 9.0588 -7.0454 -2.1427 39 1 13.8292 -9.1017 0.1941 40 1 9.0572 -7.0494 2.1337 41 1 6.8565 -5.9481 2.1286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750613463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:57 Heat of formation + Delta-G solvation = 92.657608 kcal Electronic energy + Delta-G solvation = -26847.852659 eV Core-core repulsion = 22731.417906 eV Total energy + Delta-G solvation = -4116.434752 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90306 -40.05003 -39.10341 -36.99402 -36.74430 -35.42106 -34.44888 -32.79754 -32.34616 -30.87750 -30.30017 -29.84042 -27.34462 -25.90528 -24.80005 -22.93082 -22.50616 -22.06834 -20.66867 -20.29683 -19.50525 -18.28088 -18.06591 -17.21901 -16.96841 -16.33576 -16.04179 -15.51295 -15.07093 -14.88430 -14.70071 -14.56424 -14.25234 -14.01041 -13.88255 -13.72593 -13.57897 -13.44805 -13.10349 -13.02981 -12.80115 -12.73614 -12.70684 -12.16483 -11.71807 -11.40601 -11.18926 -11.13880 -10.95803 -10.81347 -10.71573 -10.51172 -10.23389 -9.44844 -9.36521 -9.06510 -8.92211 -8.64662 -8.30068 -7.35350 -6.54015 -4.12969 1.01891 1.62226 1.79787 2.03036 2.11883 2.37716 2.58234 3.06398 3.08658 3.09457 3.12522 3.37225 3.69180 3.89638 4.03663 4.14104 4.28652 4.52164 4.67827 4.82417 4.88902 5.00483 5.00780 5.13199 5.19905 5.29825 5.41536 5.64805 5.79431 5.85647 6.10576 6.23897 6.27183 6.33604 6.45530 6.50893 6.58671 6.78981 6.94266 7.12027 7.21452 7.25829 7.32409 7.33869 7.69771 7.82879 7.90445 8.41008 8.91109 9.58896 10.63271 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.001803 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.042136 B =15525.664649 C =16217.010880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.354 5.354 3 C 0.138 3.862 4 C -0.212 4.212 5 C 0.289 3.711 6 N -0.430 5.430 7 C 0.367 3.633 8 N -0.652 5.652 9 C 0.696 3.304 10 O -0.547 6.547 11 N -0.730 5.730 12 C 0.198 3.802 13 C -0.217 4.217 14 C -0.052 4.052 15 C -0.196 4.196 16 C 0.161 3.839 17 O -0.172 6.172 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.238 4.238 27 C -0.049 4.049 28 N -0.268 5.268 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.193 0.807 33 H 0.417 0.583 34 H 0.400 0.600 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.272 0.728 40 H 0.128 0.872 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.678 18.172 0.313 29.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.131 5.131 3 C -0.018 4.018 4 C -0.231 4.231 5 C -0.027 4.027 6 N -0.107 5.107 7 C 0.105 3.895 8 N -0.305 5.305 9 C 0.396 3.604 10 O -0.420 6.420 11 N -0.385 5.385 12 C 0.076 3.924 13 C -0.219 4.219 14 C -0.071 4.071 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.075 6.075 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.257 4.257 27 C -0.068 4.068 28 N -0.097 5.097 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.210 0.790 33 H 0.254 0.746 34 H 0.234 0.766 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.833 17.369 0.058 28.689 hybrid contribution 1.540 0.680 0.872 1.896 sum -21.293 18.049 0.930 27.929 Atomic orbital electron populations 1.22056 0.72518 1.05323 1.04263 1.48302 1.07456 1.03348 1.53996 1.22837 0.88635 0.94357 0.95964 1.15641 0.88801 0.89083 1.29553 1.24421 0.92337 0.93263 0.92636 1.81336 1.09621 1.08065 1.11687 1.18749 0.87646 0.86587 0.96476 1.42098 1.06811 1.04611 1.76948 1.16002 0.85714 0.80114 0.78599 1.91032 1.22383 1.73718 1.54834 1.45530 1.07386 1.07057 1.78547 1.19904 0.94473 0.75979 1.02025 1.19186 0.98044 1.10912 0.93711 1.20542 0.93664 0.96306 0.96612 1.20220 0.97100 1.07891 0.96314 1.19449 0.86778 0.89816 0.93333 1.83978 1.25743 1.64606 1.33145 1.21310 0.98225 1.44435 0.83031 0.88942 1.25322 0.95467 0.96249 0.99406 1.70026 1.13000 1.39101 1.27143 0.85762 0.78507 0.79098 0.79988 1.19412 1.20201 1.19420 1.21158 0.97576 1.08479 0.98495 1.20655 0.93968 0.95664 0.96466 1.78150 0.98807 1.03763 1.28939 0.89862 0.88380 0.88756 0.79005 0.74569 0.76589 0.91378 0.91431 0.86888 0.86362 0.91802 0.85414 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.23 11.44 59.85 0.68 0.92 16 2 N -0.35 -2.41 3.98 -67.57 -0.27 -2.68 16 3 C 0.14 0.71 11.47 -16.52 -0.19 0.52 16 4 C -0.21 -1.76 5.98 -106.69 -0.64 -2.40 16 5 C 0.29 2.73 15.62 -22.47 -0.35 2.38 16 6 N -0.43 -5.04 18.54 41.84 0.78 -4.26 16 7 C 0.37 4.01 7.81 -154.39 -1.21 2.81 16 8 N -0.65 -7.00 5.44 -15.29 -0.08 -7.09 16 9 C 0.70 9.29 8.53 -86.93 -0.74 8.55 16 10 O -0.55 -9.28 15.06 5.29 0.08 -9.20 16 11 N -0.73 -8.82 5.55 -66.41 -0.37 -9.19 16 12 C 0.20 2.68 5.80 -5.19 -0.03 2.65 16 13 C -0.22 -3.37 5.25 -104.57 -0.55 -3.91 16 14 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 15 C -0.20 -3.89 9.99 -39.40 -0.39 -4.28 16 16 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 17 O -0.17 -4.75 9.76 0.05 0.00 -4.75 16 18 C -0.39 -10.66 9.49 30.89 0.29 -10.36 16 19 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.57 13.67 55.48 0.76 -23.82 16 22 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 C -0.24 -4.85 9.17 -39.40 -0.36 -5.21 16 27 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 28 N -0.27 -3.16 10.72 31.62 0.34 -2.82 16 29 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 32 H 0.19 0.09 8.06 -52.49 -0.42 -0.33 16 33 H 0.42 3.44 8.63 -40.82 -0.35 3.09 16 34 H 0.40 4.18 8.48 -40.82 -0.35 3.84 16 35 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 39 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 374.75 15.07 5.65 5.65 Total: -1.00 -36.22 374.75 -6.95 -43.17 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.20 Total: 6.39 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -4.61 Total: -6.37 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 1.15 Total: -49.85 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.08 Total: -13.95 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.22 -6.95 -43.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750613463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.831 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds