Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34346 * 125.69753 * 2 1 4 4 C 1.38045 * 107.52630 * 180.02562 * 3 2 1 5 5 C 1.43198 * 126.44130 * 180.02562 * 4 3 2 6 6 N 4.70758 * 152.85569 * 0.02562 * 2 1 3 7 7 C 1.41792 * 107.12332 * 0.02562 * 4 3 2 8 8 N 1.39853 * 126.06148 * 180.02562 * 7 4 3 9 9 C 1.34777 * 120.00640 * 179.97438 * 8 7 4 10 10 O 1.21591 * 119.99393 * 0.02562 * 9 8 7 11 11 N 1.34768 * 120.00297 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00179 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47448 * 180.02562 * 12 11 9 14 14 C 1.38299 * 119.93217 * 269.73027 * 13 12 11 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47303 * 60.00249 * 22 20 18 24 24 H 1.48499 * 109.46956 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47359 * 299.99968 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 N 1.30937 * 107.88517 * 0.26471 * 7 4 3 29 29 H 1.08999 * 109.46957 * 89.99710 * 1 2 3 30 30 H 1.08995 * 109.47063 * 209.99984 * 1 2 3 31 31 H 1.09004 * 109.46829 * 329.99988 * 1 2 3 32 32 H 1.08000 * 126.24067 * 0.02562 * 3 2 1 33 33 H 0.97007 * 119.99479 * 0.02562 * 8 7 4 34 34 H 0.97000 * 120.00448 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.46848 * 59.99850 * 12 11 9 36 36 H 1.09001 * 109.46885 * 300.00464 * 12 11 9 37 37 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 38 38 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 39 39 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 40 40 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 41 41 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2490 1.0910 0.0000 4 6 3.5606 0.6605 -0.0006 5 6 4.7280 1.4898 -0.0003 6 7 5.6541 2.1478 0.0010 7 6 3.5346 -0.7572 -0.0016 8 7 4.6499 -1.6009 -0.0019 9 6 4.4833 -2.9384 -0.0023 10 8 3.3631 -3.4113 -0.0029 11 7 5.5581 -3.7514 -0.0031 12 6 5.3769 -5.2052 -0.0042 13 6 6.7247 -5.8795 -0.0043 14 6 7.3396 -6.1925 -1.2029 15 6 8.5771 -6.8052 -1.2064 16 6 9.1989 -7.1177 -0.0045 17 8 10.4126 -7.7259 -0.0047 18 6 11.0113 -7.8978 1.1911 19 1 10.4903 -7.6320 2.0990 20 6 12.2958 -8.4157 1.2552 21 7 12.9304 -8.7398 0.1493 22 14 13.1255 -8.6532 2.9119 23 1 12.3205 -9.5873 3.7393 24 1 14.4839 -9.2178 2.7088 25 1 13.2316 -7.3440 3.6047 26 6 8.5764 -6.8072 1.1974 27 6 7.3413 -6.1894 1.1943 28 7 2.2814 -1.1364 -0.0073 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9141 2.1178 0.0004 33 1 5.5436 -1.2235 -0.0010 34 1 6.4517 -3.3741 -0.0031 35 1 4.8219 -5.5015 -0.8943 36 1 4.8222 -5.5028 0.8857 37 1 6.8531 -5.9537 -2.1372 38 1 9.0588 -7.0454 -2.1427 39 1 13.8292 -9.1017 0.1941 40 1 9.0572 -7.0494 2.1337 41 1 6.8565 -5.9481 2.1286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750613463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = 67.008261 kcal Electronic energy + Delta-G solvation = -26848.964898 eV Core-core repulsion = 22731.417906 eV Total energy + Delta-G solvation = -4117.546992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.54213 -41.12473 -40.65850 -38.56353 -37.51821 -36.30166 -35.65288 -34.29197 -33.35359 -31.83695 -31.56670 -31.16078 -27.99212 -27.49579 -26.20916 -23.64481 -23.58782 -23.32500 -22.12021 -21.17262 -20.23796 -19.87457 -19.16808 -18.75917 -17.88533 -17.07026 -16.69062 -16.53793 -16.38161 -16.09461 -16.01237 -15.91405 -15.52165 -15.33920 -14.97658 -14.75935 -14.60451 -14.39315 -14.28348 -14.16562 -13.77796 -13.55006 -13.43424 -13.27497 -13.23229 -13.01552 -12.53710 -12.38744 -12.22476 -12.14879 -11.91213 -11.88090 -11.25479 -11.20320 -10.80189 -10.23560 -9.91867 -9.80437 -9.34351 -9.02342 -8.48360 -6.16631 0.48889 0.55041 0.58511 1.01873 1.11781 1.35521 1.45421 1.51283 1.66482 1.82148 2.14319 2.17016 2.61705 2.75560 2.97649 3.15599 3.33651 3.48745 3.67495 3.86887 4.01945 4.04255 4.18099 4.32034 4.47587 4.55662 4.57362 4.58056 4.63606 4.76886 4.81577 4.87975 5.04761 5.14394 5.27206 5.36595 5.46521 5.53195 5.67343 5.69919 5.75633 5.95246 6.01267 6.16578 6.48558 6.61745 6.95615 6.96373 7.41890 7.75585 8.74103 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.001803 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.042136 B =15525.664649 C =16217.010880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.350 5.350 3 C 0.173 3.827 4 C -0.233 4.233 5 C 0.315 3.685 6 N -0.476 5.476 7 C 0.349 3.651 8 N -0.645 5.645 9 C 0.699 3.301 10 O -0.584 6.584 11 N -0.722 5.722 12 C 0.205 3.795 13 C -0.182 4.182 14 C -0.041 4.041 15 C -0.206 4.206 16 C 0.123 3.877 17 O -0.229 6.229 18 C -0.414 4.414 19 H 0.104 0.896 20 C -0.022 4.022 21 N -0.918 5.918 22 Si 1.017 2.983 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.245 4.245 27 C -0.043 4.043 28 N -0.320 5.320 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.247 0.753 33 H 0.428 0.572 34 H 0.409 0.591 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.115 0.885 39 H 0.273 0.727 40 H 0.120 0.880 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.138 20.877 1.315 33.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.127 5.127 3 C 0.016 3.984 4 C -0.251 4.251 5 C 0.001 3.999 6 N -0.154 5.154 7 C 0.088 3.912 8 N -0.298 5.298 9 C 0.399 3.601 10 O -0.459 6.459 11 N -0.378 5.378 12 C 0.082 3.918 13 C -0.183 4.183 14 C -0.060 4.060 15 C -0.225 4.225 16 C 0.072 3.928 17 O -0.135 6.135 18 C -0.490 4.490 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.836 3.164 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.182 1.182 26 C -0.264 4.264 27 C -0.062 4.062 28 N -0.149 5.149 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.155 0.845 32 H 0.263 0.737 33 H 0.266 0.734 34 H 0.245 0.755 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.166 0.834 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.349 20.124 1.059 33.172 hybrid contribution 2.099 0.058 0.454 2.148 sum -24.251 20.182 1.513 31.587 Atomic orbital electron populations 1.22478 0.70037 1.06870 1.05621 1.48637 1.08686 1.02593 1.52774 1.23618 0.86999 0.95874 0.91915 1.15718 0.89703 0.87803 1.31889 1.24460 0.91875 0.92346 0.91227 1.81367 1.10750 1.09606 1.13720 1.18985 0.87516 0.87499 0.97214 1.41914 1.07671 1.03857 1.76404 1.16013 0.85117 0.80819 0.78162 1.91009 1.23764 1.74623 1.56512 1.45244 1.07754 1.06409 1.78429 1.19793 0.92641 0.76561 1.02794 1.19466 0.98068 1.07942 0.92872 1.20894 0.92104 0.94407 0.98579 1.20455 0.98363 1.08303 0.95377 1.20010 0.86267 0.91119 0.95421 1.83948 1.28076 1.67883 1.33608 1.21790 0.98908 1.44681 0.83616 0.87892 1.26580 0.95928 0.95817 1.03643 1.70173 1.13623 1.41954 1.29853 0.84665 0.77272 0.79577 0.74844 1.18160 1.19754 1.18160 1.21249 0.98856 1.08959 0.97351 1.20959 0.92533 0.94244 0.98454 1.78017 0.99662 1.06996 1.30218 0.88588 0.89522 0.84550 0.73741 0.73380 0.75471 0.90664 0.90913 0.83408 0.86725 0.91815 0.86194 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.11 11.44 127.77 1.46 1.58 16 2 N -0.35 -3.69 3.98 -367.70 -1.46 -5.16 16 3 C 0.17 1.08 11.47 84.26 0.97 2.05 16 4 C -0.23 -3.30 5.98 -21.20 -0.13 -3.42 16 5 C 0.31 5.42 15.62 88.33 1.38 6.80 16 6 N -0.48 -10.67 18.54 19.00 0.35 -10.32 16 7 C 0.35 7.09 7.81 133.86 1.05 8.13 16 8 N -0.65 -12.96 5.44 -320.56 -1.74 -14.70 16 9 C 0.70 17.43 8.53 179.06 1.53 18.95 16 10 O -0.58 -19.01 15.06 -4.00 -0.06 -19.08 16 11 N -0.72 -15.53 5.55 -482.29 -2.68 -18.20 16 12 C 0.21 4.85 5.80 85.63 0.50 5.34 16 13 C -0.18 -5.12 5.25 -19.83 -0.10 -5.22 16 14 C -0.04 -1.26 9.69 22.25 0.22 -1.05 16 15 C -0.21 -8.23 9.99 22.39 0.22 -8.01 16 16 C 0.12 5.84 6.65 22.58 0.15 5.99 16 17 O -0.23 -13.43 9.76 -22.74 -0.22 -13.66 16 18 C -0.41 -23.55 9.49 67.92 0.64 -22.90 16 19 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 20 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 21 N -0.92 -55.64 13.67 21.61 0.30 -55.35 16 22 Si 1.02 42.15 29.55 68.60 2.03 44.18 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 26 C -0.24 -10.03 9.17 22.39 0.21 -9.82 16 27 C -0.04 -1.37 9.69 22.25 0.22 -1.15 16 28 N -0.32 -7.05 10.72 -53.87 -0.58 -7.63 16 29 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.14 -0.95 8.14 -2.39 -0.02 -0.97 16 32 H 0.25 -1.28 8.06 -2.91 -0.02 -1.30 16 33 H 0.43 6.46 8.63 -92.70 -0.80 5.66 16 34 H 0.41 7.42 8.48 -92.71 -0.79 6.63 16 35 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 36 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 37 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 41 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -86.32 374.75 4.24 -82.08 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.46 Total: 21.31 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 8.77 Total: -3.48 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -5.82 Total: -111.36 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.28 Total: -32.73 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -86.32 4.24 -82.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750613463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.090 kcal (2) G-P(sol) polarization free energy of solvation -86.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds