Wall clock time and date at job start Sat Apr 11 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29885 * 120.00116 * 2 1 4 4 N 1.40094 * 120.00043 * 0.02562 * 3 2 1 5 5 C 1.38430 * 120.00459 * 179.97438 * 4 3 2 6 6 C 1.39666 * 120.05612 * 179.97438 * 5 4 3 7 7 C 1.38276 * 118.02706 * 179.97438 * 6 5 4 8 8 C 1.40095 * 117.99911 * 0.02562 * 7 6 5 9 9 C 1.47837 * 120.08909 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99787 * 179.97438 * 9 8 7 11 11 O 1.21564 * 120.00178 * 0.02562 * 9 8 7 12 12 N 1.32794 * 119.81653 * 359.97438 * 8 7 6 13 13 N 1.28362 * 122.10860 * 359.73054 * 12 8 7 14 14 C 1.47335 * 119.99746 * 180.02562 * 2 1 3 15 15 C 1.39826 * 120.08792 * 359.71448 * 14 2 1 16 16 C 1.37722 * 119.90734 * 179.76913 * 15 14 2 17 17 C 1.39081 * 120.08776 * 0.51626 * 16 15 14 18 18 O 1.35653 * 119.91034 * 179.71640 * 17 16 15 19 19 C 1.34810 * 117.00238 * 174.46974 * 18 17 16 20 20 H 1.07999 * 119.99842 * 5.05754 * 19 18 17 21 21 C 1.38625 * 120.00451 * 185.06047 * 19 18 17 22 22 N 1.31578 * 119.99651 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00128 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47397 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46708 * 119.99901 * 23 21 19 26 26 H 1.48495 * 109.47095 * 239.99626 * 23 21 19 27 27 C 1.39081 * 120.17943 * 359.73932 * 17 16 15 28 28 C 1.37720 * 120.09047 * 0.02562 * 27 17 16 29 29 H 1.08999 * 109.47432 * 269.99747 * 1 2 3 30 30 H 1.09000 * 109.47398 * 29.99473 * 1 2 3 31 31 H 1.08997 * 109.47679 * 149.99530 * 1 2 3 32 32 H 0.97004 * 120.00166 * 359.97438 * 4 3 2 33 33 H 1.07997 * 120.98357 * 359.96160 * 6 5 4 34 34 H 1.07999 * 120.99941 * 180.02562 * 7 6 5 35 35 H 0.96995 * 119.99807 * 0.02562 * 10 9 8 36 36 H 0.97004 * 119.99826 * 180.02562 * 10 9 8 37 37 H 1.07994 * 120.04835 * 0.02562 * 15 14 2 38 38 H 1.07995 * 119.95324 * 180.23450 * 16 15 14 39 39 H 0.96992 * 119.99682 * 180.02562 * 22 21 19 40 40 H 1.08002 * 119.95628 * 179.97438 * 27 17 16 41 41 H 1.07991 * 120.04539 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1564 1.1248 0.0000 4 7 1.4560 2.3381 0.0005 5 6 2.1481 3.5370 0.0011 6 6 1.4509 4.7472 0.0011 7 6 2.1842 5.9195 0.0022 8 6 3.5817 5.8211 0.0027 9 6 4.4108 7.0450 0.0033 10 7 5.7551 6.9483 0.0042 11 8 3.8802 8.1387 0.0038 12 7 4.1594 4.6254 0.0026 13 7 3.4773 3.5381 0.0072 14 6 2.2436 -1.2760 -0.0006 15 6 1.5463 -2.4880 0.0049 16 6 2.2386 -3.6785 -0.0004 17 6 3.6294 -3.6764 -0.0005 18 8 4.3076 -4.8512 0.0001 19 6 5.6491 -4.7835 -0.1157 20 1 6.1428 -3.8230 -0.1212 21 6 6.3947 -5.9468 -0.2278 22 7 5.7932 -7.1170 -0.2207 23 14 8.2533 -5.8529 -0.3890 24 1 8.6807 -4.4309 -0.3701 25 1 8.8855 -6.5744 0.7448 26 1 8.6714 -6.4791 -1.6689 27 6 4.3267 -2.4730 -0.0005 28 6 3.6419 -1.2781 -0.0001 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5139 32 1 0.4860 2.3382 0.0005 33 1 0.3711 4.7667 0.0000 34 1 1.6943 6.8820 0.0026 35 1 6.1785 6.0756 0.0042 36 1 6.2992 7.7514 0.0050 37 1 0.4664 -2.4905 0.0092 38 1 1.7007 -4.6150 0.0000 39 1 6.3149 -7.9309 -0.2987 40 1 5.4067 -2.4755 -0.0001 41 1 4.1840 -0.3442 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756836289.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:00 Heat of formation + Delta-G solvation = 68.459053 kcal Electronic energy + Delta-G solvation = -26885.258216 eV Core-core repulsion = 22767.774136 eV Total energy + Delta-G solvation = -4117.484081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33343 -39.42088 -39.22241 -38.04210 -36.50040 -34.50504 -33.78605 -33.30521 -32.42259 -30.94358 -30.45705 -28.42286 -28.25035 -25.61202 -25.49793 -24.28917 -22.16299 -21.87921 -21.70109 -19.79299 -18.48479 -18.37640 -18.11048 -17.74277 -17.00773 -16.61001 -16.27283 -15.79899 -15.07248 -14.98933 -14.78053 -14.51594 -14.30844 -14.18724 -14.16885 -13.89353 -13.71571 -13.65892 -12.93727 -12.62128 -12.55938 -12.34732 -12.05014 -11.79977 -11.58561 -11.18909 -11.10238 -10.77020 -10.62020 -10.53601 -10.50674 -10.32157 -10.15558 -10.01487 -9.79677 -9.41938 -9.01613 -8.38308 -8.32084 -7.11926 -6.61257 -4.16776 0.28862 0.55556 1.43054 2.17011 2.24008 2.43485 2.84362 3.07603 3.08123 3.09530 3.14334 3.50972 3.75076 3.86139 4.11340 4.32958 4.42922 4.50187 4.55887 4.72291 4.81968 4.91970 4.96717 5.08771 5.26970 5.35327 5.46247 5.58552 5.64079 5.69682 5.80896 6.00224 6.16214 6.35021 6.42685 6.52057 6.62347 6.81329 6.92753 6.99452 7.10763 7.25028 7.30731 7.65049 7.84772 7.86869 8.04861 8.53233 8.84203 9.50413 10.55523 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012871 B = 0.002083 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.885644 B =13436.696951 C =15591.814787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.175 3.825 3 N -0.261 5.261 4 N -0.553 5.553 5 C 0.380 3.620 6 C -0.189 4.189 7 C -0.022 4.022 8 C -0.051 4.051 9 C 0.593 3.407 10 N -0.836 5.836 11 O -0.544 6.544 12 N -0.165 5.165 13 N -0.260 5.260 14 C -0.167 4.167 15 C -0.042 4.042 16 C -0.198 4.198 17 C 0.168 3.832 18 O -0.165 6.165 19 C -0.390 4.390 20 H 0.098 0.902 21 C 0.040 3.960 22 N -0.854 5.854 23 Si 0.944 3.056 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.243 4.243 28 C -0.018 4.018 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.394 0.606 33 H 0.153 0.847 34 H 0.161 0.839 35 H 0.414 0.586 36 H 0.406 0.594 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.273 0.727 40 H 0.132 0.868 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 20.473 0.318 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.011 4.011 3 N -0.068 5.068 4 N -0.274 5.274 5 C 0.139 3.861 6 C -0.223 4.223 7 C -0.051 4.051 8 C -0.201 4.201 9 C 0.375 3.625 10 N -0.399 5.399 11 O -0.420 6.420 12 N -0.014 5.014 13 N -0.114 5.114 14 C -0.171 4.171 15 C -0.063 4.063 16 C -0.217 4.217 17 C 0.111 3.889 18 O -0.066 6.066 19 C -0.466 4.466 20 H 0.116 0.884 21 C -0.165 4.165 22 N -0.487 5.487 23 Si 0.768 3.232 24 H -0.188 1.188 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.262 4.262 28 C -0.039 4.039 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.236 0.764 33 H 0.171 0.829 34 H 0.179 0.821 35 H 0.244 0.756 36 H 0.237 0.763 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.083 0.917 40 H 0.149 0.851 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.221 20.117 0.325 21.376 hybrid contribution -1.293 0.478 -0.086 1.381 sum -8.514 20.595 0.239 22.287 Atomic orbital electron populations 1.21337 0.93125 1.03724 1.03548 1.23357 0.92971 0.91814 0.92971 1.75404 1.21766 0.89822 1.19852 1.45164 1.06480 1.01061 1.74717 1.19733 0.91680 0.85027 0.89640 1.21676 1.02032 0.90669 1.07874 1.22045 0.92852 0.99776 0.90419 1.22367 0.93514 0.94503 1.09736 1.17441 0.82577 0.86995 0.75438 1.43636 1.06572 1.13442 1.76226 1.90833 1.72999 1.27348 1.50859 1.73123 1.30850 0.94347 1.03079 1.73498 1.03365 1.17765 1.16814 1.17591 0.92753 0.88605 1.18150 1.20700 0.98305 0.90728 0.96531 1.20087 0.91404 0.98018 1.12222 1.19594 0.91712 0.86400 0.91150 1.83929 1.21355 1.25364 1.75911 1.21512 0.78284 0.95089 1.51723 0.88446 1.25378 1.00946 0.94111 0.96094 1.70052 1.36633 0.97626 1.44437 0.85591 0.80024 0.79163 0.78414 1.18781 1.19980 1.19967 1.21141 1.00920 0.91720 1.12457 1.21021 0.92720 0.97538 0.92571 0.89714 0.92050 0.89048 0.76419 0.82924 0.82124 0.75599 0.76297 0.86412 0.86017 0.91750 0.85086 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.03 36.01 0.32 -1.07 16 2 C 0.17 2.36 7.10 -79.72 -0.57 1.80 16 3 N -0.26 -3.82 10.19 35.10 0.36 -3.47 16 4 N -0.55 -6.31 6.25 31.21 0.20 -6.12 16 5 C 0.38 4.54 7.68 -154.93 -1.19 3.35 16 6 C -0.19 -1.59 10.04 -39.03 -0.39 -1.98 16 7 C -0.02 -0.20 9.71 -38.87 -0.38 -0.58 16 8 C -0.05 -0.57 6.83 -82.83 -0.57 -1.14 16 9 C 0.59 6.37 8.08 -12.33 -0.10 6.27 16 10 N -0.84 -6.30 8.86 30.53 0.27 -6.03 16 11 O -0.54 -7.16 17.22 5.31 0.09 -7.07 16 12 N -0.16 -2.14 10.73 33.32 0.36 -1.78 16 13 N -0.26 -3.80 11.08 31.22 0.35 -3.45 16 14 C -0.17 -2.73 5.87 -105.01 -0.62 -3.34 16 15 C -0.04 -0.66 9.35 -39.18 -0.37 -1.03 16 16 C -0.20 -3.78 9.97 -39.46 -0.39 -4.17 16 17 C 0.17 3.81 6.65 -38.96 -0.26 3.55 16 18 O -0.16 -4.44 9.75 0.40 0.00 -4.44 16 19 C -0.39 -10.38 9.48 30.88 0.29 -10.09 16 20 H 0.10 2.41 5.18 -52.49 -0.27 2.13 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.85 -23.91 13.67 55.48 0.76 -23.16 16 23 Si 0.94 19.70 29.55 -169.99 -5.02 14.68 16 24 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 27 C -0.24 -5.08 9.15 -39.46 -0.36 -5.44 16 28 C -0.02 -0.34 9.57 -39.18 -0.37 -0.71 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.42 6.35 -51.93 -0.33 0.09 16 31 H 0.09 0.74 6.47 -51.93 -0.34 0.40 16 32 H 0.39 3.10 6.44 -182.60 -1.18 1.92 16 33 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.16 1.14 7.71 -52.49 -0.40 0.74 16 35 H 0.41 2.80 8.17 -40.82 -0.33 2.46 16 36 H 0.41 2.20 8.93 -40.82 -0.36 1.83 16 37 H 0.12 1.39 6.35 -52.49 -0.33 1.06 16 38 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.13 2.76 5.62 -52.49 -0.29 2.47 16 41 H 0.12 2.22 7.55 -52.49 -0.40 1.83 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -33.60 363.98 -6.84 -40.45 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -4.64 Total: 8.50 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -5.04 Total: -13.61 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 2.29 Total: -43.99 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.10 Total: -11.50 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.60 -6.84 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756836289.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.905 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds