Wall clock time and date at job start Sat Apr 11 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86806 * 119.99409 * 2 1 4 4 H 1.48499 * 109.46976 * 269.99562 * 3 2 1 5 5 H 1.48500 * 109.47269 * 29.99339 * 3 2 1 6 6 H 1.48502 * 109.46980 * 149.99768 * 3 2 1 7 7 C 1.38648 * 120.00595 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00211 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.35744 * 117.00150 * 185.05341 * 9 7 2 11 11 C 1.38880 * 120.07006 * 354.46243 * 10 9 7 12 12 C 1.38102 * 119.93222 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06570 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.92508 * 179.97438 * 13 12 11 15 15 N 1.46897 * 109.47071 * 90.00240 * 14 13 12 16 16 C 1.46752 * 111.00244 * 169.99606 * 15 14 13 17 17 C 1.53425 * 108.60775 * 285.44821 * 16 15 14 18 18 H 1.08995 * 109.77653 * 56.40570 * 17 16 15 19 19 C 1.52998 * 109.78138 * 177.15474 * 17 16 15 20 20 O 1.42897 * 109.47589 * 185.00224 * 19 17 16 21 21 O 1.43144 * 107.89657 * 296.75237 * 17 16 15 22 22 C 1.36150 * 116.66195 * 45.39118 * 21 17 16 23 23 C 1.38774 * 118.74336 * 165.21201 * 22 21 17 24 24 C 1.38176 * 120.21039 * 179.55019 * 23 22 21 25 25 C 1.38263 * 120.02188 * 359.97438 * 24 23 22 26 26 C 1.38067 * 120.11611 * 0.04680 * 25 24 23 27 27 C 1.38967 * 121.37900 * 344.90683 * 22 21 17 28 28 C 1.38296 * 120.14206 * 0.25109 * 13 12 11 29 29 C 1.38101 * 120.06554 * 359.44926 * 28 13 12 30 30 H 0.96997 * 120.00661 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.03441 * 0.02562 * 11 10 9 32 32 H 1.07996 * 119.96302 * 179.97438 * 12 11 10 33 33 H 1.08993 * 109.47638 * 330.00098 * 14 13 12 34 34 H 1.09005 * 109.47085 * 210.00025 * 14 13 12 35 35 H 1.08999 * 109.62080 * 165.71320 * 16 15 14 36 36 H 1.08997 * 109.76077 * 45.26673 * 16 15 14 37 37 H 1.09001 * 109.47231 * 64.99549 * 19 17 16 38 38 H 1.09006 * 109.47064 * 304.99990 * 19 17 16 39 39 H 0.96696 * 114.00324 * 180.02562 * 20 19 17 40 40 H 1.08007 * 119.89952 * 359.52176 * 23 22 21 41 41 H 1.07997 * 119.99405 * 179.97438 * 24 23 22 42 42 H 1.07995 * 119.94009 * 180.02562 * 25 24 23 43 43 H 1.08006 * 119.87858 * 180.02562 * 26 25 24 44 44 H 1.07995 * 119.96990 * 179.70331 * 28 13 12 45 45 H 1.08005 * 120.03390 * 180.27510 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4467 2.6528 0.6999 6 1 3.5470 1.4404 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3349 -2.3684 0.0005 10 6 2.0702 -3.5044 0.1076 11 6 3.4574 -3.4392 0.0951 12 6 4.2027 -4.5968 0.2036 13 6 3.5690 -5.8201 0.3243 14 6 4.3853 -7.0813 0.4420 15 7 4.6568 -7.3585 1.8588 16 6 5.2410 -8.6936 2.0310 17 6 4.1343 -9.7399 1.8454 18 1 3.6635 -9.6098 0.8711 19 6 4.7284 -11.1460 1.9495 20 8 3.7169 -12.1132 1.6607 21 8 3.1666 -9.5452 2.8820 22 6 2.7801 -8.2623 3.1239 23 6 1.6396 -8.0407 3.8829 24 6 1.2251 -6.7510 4.1547 25 6 1.9472 -5.6758 3.6707 26 6 3.0827 -5.8879 2.9145 27 6 3.5056 -7.1833 2.6333 28 6 2.1877 -5.8890 0.3313 29 6 1.4369 -4.7344 0.2293 30 1 -0.4851 0.8400 -0.0004 31 1 3.9529 -2.4842 0.0005 32 1 5.2815 -4.5467 0.1935 33 1 5.3279 -6.9552 -0.0906 34 1 3.8318 -7.9143 0.0084 35 1 5.6637 -8.7818 3.0318 36 1 6.0228 -8.8524 1.2883 37 1 5.1072 -11.3067 2.9589 38 1 5.5446 -11.2494 1.2344 39 1 4.0233 -13.0291 1.7085 40 1 1.0739 -8.8791 4.2619 41 1 0.3368 -6.5825 4.7453 42 1 1.6222 -4.6683 3.8843 43 1 3.6441 -5.0452 2.5387 44 1 1.6958 -6.8462 0.4208 45 1 0.3583 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759742629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:04 Heat of formation + Delta-G solvation = -37.288711 kcal Electronic energy + Delta-G solvation = -29962.896892 eV Core-core repulsion = 25912.074837 eV Total energy + Delta-G solvation = -4050.822055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33726 -39.12580 -37.87679 -37.16783 -36.61121 -35.72034 -32.38998 -31.73050 -30.38884 -30.17289 -30.03951 -28.15706 -26.08819 -25.16704 -24.13077 -23.01380 -22.21115 -21.95295 -20.90018 -19.69339 -18.16613 -18.02152 -17.68341 -17.10152 -16.62842 -16.39315 -15.44325 -14.99104 -14.87259 -14.67280 -14.48450 -14.43412 -14.24032 -13.80782 -13.73882 -13.66076 -13.40234 -13.25271 -12.97104 -12.73039 -12.42620 -12.32259 -11.97424 -11.66582 -11.60161 -11.50450 -11.21784 -11.03080 -10.89024 -10.73960 -10.59703 -10.51614 -10.45672 -10.41352 -9.36737 -9.24843 -8.84580 -8.30192 -8.00242 -7.77045 -7.19375 -6.47915 -4.06654 1.53917 1.67938 2.20018 2.22735 3.10548 3.12097 3.12637 3.16881 3.61629 3.75024 3.94291 4.04200 4.50469 4.56006 4.65475 4.72034 4.87618 4.96837 5.02497 5.08029 5.15060 5.22270 5.25135 5.29132 5.37282 5.54236 5.59139 5.68414 5.70115 5.73917 5.81278 5.83446 6.15725 6.18880 6.39274 6.44697 6.49068 6.65679 6.76631 6.86615 6.87802 6.99964 7.05795 7.13556 7.22500 7.26490 7.34762 7.41348 7.61729 7.77950 7.96976 8.97709 9.67370 10.69825 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.002877 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.242092 B = 9731.443270 C =10296.146616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.052 4.052 13 C -0.192 4.192 14 C 0.109 3.891 15 N -0.479 5.479 16 C 0.025 3.975 17 C 0.051 3.949 18 H 0.080 0.920 19 C 0.088 3.912 20 O -0.565 6.565 21 O -0.302 6.302 22 C 0.081 3.919 23 C -0.144 4.144 24 C -0.097 4.097 25 C -0.137 4.137 26 C -0.050 4.050 27 C 0.027 3.973 28 C -0.050 4.050 29 C -0.189 4.189 30 H 0.270 0.730 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.380 0.620 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.134 0.866 44 H 0.102 0.898 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.351 -18.704 4.796 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.107 3.893 11 C -0.256 4.256 12 C -0.071 4.071 13 C -0.193 4.193 14 C -0.014 4.014 15 N -0.196 5.196 16 C -0.104 4.104 17 C -0.007 4.007 18 H 0.097 0.903 19 C 0.010 3.990 20 O -0.370 6.370 21 O -0.216 6.216 22 C 0.034 3.966 23 C -0.164 4.164 24 C -0.115 4.115 25 C -0.156 4.156 26 C -0.069 4.069 27 C -0.069 4.069 28 C -0.069 4.069 29 C -0.209 4.209 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.227 0.773 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.152 0.848 44 H 0.120 0.880 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.885 -17.767 4.905 20.915 hybrid contribution 0.429 -0.109 -0.363 0.572 sum 10.313 -17.876 4.542 21.132 Atomic orbital electron populations 1.70034 1.05971 1.27734 1.45825 1.25286 0.95820 0.98842 0.96494 0.85727 0.78968 0.80116 0.78727 1.19888 1.20233 1.19149 1.21324 0.91796 0.80777 1.52869 0.89027 1.83980 1.34431 1.11502 1.77919 1.19369 0.90232 0.87938 0.91776 1.21138 0.93761 0.98854 1.11896 1.20545 0.98327 0.91407 0.96777 1.18928 0.93173 0.93580 1.13631 1.21088 0.99092 0.95359 0.85888 1.59577 1.26086 1.25253 1.08658 1.22859 0.96550 0.86460 1.04503 1.23061 0.91074 0.95111 0.91483 0.90252 1.22096 0.89815 0.86796 1.00297 1.86572 1.38352 1.18575 1.93547 1.86330 1.58328 1.23854 1.53137 1.19004 0.94283 0.82880 1.00428 1.20307 0.95537 0.97589 1.02927 1.20888 0.99467 0.91534 0.99622 1.21014 0.96025 0.99231 0.99352 1.21074 0.96108 0.95285 0.94442 1.18538 0.92418 0.93272 1.02663 1.20424 0.92830 0.96605 0.97080 1.20105 0.99444 0.90143 1.11160 0.91975 0.85543 0.87392 0.89933 0.94259 0.88918 0.88467 0.92385 0.91464 0.77260 0.85864 0.85779 0.85716 0.84841 0.88005 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.39 -10.69 9.49 30.88 0.29 -10.40 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 9 O -0.18 -4.89 9.76 0.07 0.00 -4.89 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.24 -4.92 9.17 -39.39 -0.36 -5.28 16 12 C -0.05 -0.90 8.52 -39.61 -0.34 -1.24 16 13 C -0.19 -3.17 3.24 -104.58 -0.34 -3.51 16 14 C 0.11 1.48 5.26 -4.98 -0.03 1.45 16 15 N -0.48 -6.47 4.80 -172.19 -0.83 -7.29 16 16 C 0.02 0.26 5.32 -3.68 -0.02 0.24 16 17 C 0.05 0.58 3.10 -26.51 -0.08 0.50 16 18 H 0.08 0.99 6.58 -51.93 -0.34 0.65 16 19 C 0.09 0.72 6.74 37.16 0.25 0.97 16 20 O -0.57 -5.33 13.65 -37.84 -0.52 -5.85 16 21 O -0.30 -4.39 10.05 -22.83 -0.23 -4.62 16 22 C 0.08 1.23 6.47 -39.11 -0.25 0.98 16 23 C -0.14 -2.08 9.94 -39.41 -0.39 -2.47 16 24 C -0.10 -1.36 10.04 -39.59 -0.40 -1.75 16 25 C -0.14 -2.15 10.03 -39.64 -0.40 -2.55 16 26 C -0.05 -0.81 6.51 -39.31 -0.26 -1.07 16 27 C 0.03 0.42 4.40 -83.59 -0.37 0.05 16 28 C -0.05 -0.91 7.07 -39.61 -0.28 -1.19 16 29 C -0.19 -3.93 9.99 -39.39 -0.39 -4.32 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 32 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.04 0.52 6.39 -51.93 -0.33 0.19 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 0.74 8.02 -51.93 -0.42 0.32 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 1.57 9.12 45.56 0.42 1.98 16 40 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 43 H 0.13 2.38 6.04 -52.48 -0.32 2.06 16 44 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.11 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -32.53 366.39 -8.95 -41.49 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -4.92 Total: 9.73 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -3.72 Total: -25.11 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: -0.07 Total: -31.47 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.75 Total: -15.36 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.53 -8.95 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759742629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.197 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds