Wall clock time and date at job start Sat Apr 11 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86806 * 119.99409 * 2 1 4 4 H 1.48499 * 109.46976 * 269.99562 * 3 2 1 5 5 H 1.48500 * 109.47269 * 29.99339 * 3 2 1 6 6 H 1.48502 * 109.46980 * 149.99768 * 3 2 1 7 7 C 1.38648 * 120.00595 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00211 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.35744 * 117.00150 * 185.05341 * 9 7 2 11 11 C 1.38880 * 120.07006 * 354.46243 * 10 9 7 12 12 C 1.38102 * 119.93222 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06570 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.92508 * 179.97438 * 13 12 11 15 15 N 1.46897 * 109.47071 * 90.00240 * 14 13 12 16 16 C 1.46752 * 111.00244 * 169.99606 * 15 14 13 17 17 C 1.53425 * 108.60775 * 285.44821 * 16 15 14 18 18 H 1.08995 * 109.77653 * 56.40570 * 17 16 15 19 19 C 1.52998 * 109.78138 * 177.15474 * 17 16 15 20 20 O 1.42897 * 109.47589 * 185.00224 * 19 17 16 21 21 O 1.43144 * 107.89657 * 296.75237 * 17 16 15 22 22 C 1.36150 * 116.66195 * 45.39118 * 21 17 16 23 23 C 1.38774 * 118.74336 * 165.21201 * 22 21 17 24 24 C 1.38176 * 120.21039 * 179.55019 * 23 22 21 25 25 C 1.38263 * 120.02188 * 359.97438 * 24 23 22 26 26 C 1.38067 * 120.11611 * 0.04680 * 25 24 23 27 27 C 1.38967 * 121.37900 * 344.90683 * 22 21 17 28 28 C 1.38296 * 120.14206 * 0.25109 * 13 12 11 29 29 C 1.38101 * 120.06554 * 359.44926 * 28 13 12 30 30 H 0.96997 * 120.00661 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.03441 * 0.02562 * 11 10 9 32 32 H 1.07996 * 119.96302 * 179.97438 * 12 11 10 33 33 H 1.08993 * 109.47638 * 330.00098 * 14 13 12 34 34 H 1.09005 * 109.47085 * 210.00025 * 14 13 12 35 35 H 1.08999 * 109.62080 * 165.71320 * 16 15 14 36 36 H 1.08997 * 109.76077 * 45.26673 * 16 15 14 37 37 H 1.09001 * 109.47231 * 64.99549 * 19 17 16 38 38 H 1.09006 * 109.47064 * 304.99990 * 19 17 16 39 39 H 0.96696 * 114.00324 * 180.02562 * 20 19 17 40 40 H 1.08007 * 119.89952 * 359.52176 * 23 22 21 41 41 H 1.07997 * 119.99405 * 179.97438 * 24 23 22 42 42 H 1.07995 * 119.94009 * 180.02562 * 25 24 23 43 43 H 1.08006 * 119.87858 * 180.02562 * 26 25 24 44 44 H 1.07995 * 119.96990 * 179.70331 * 28 13 12 45 45 H 1.08005 * 120.03390 * 180.27510 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4467 2.6528 0.6999 6 1 3.5470 1.4404 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3349 -2.3684 0.0005 10 6 2.0702 -3.5044 0.1076 11 6 3.4574 -3.4392 0.0951 12 6 4.2027 -4.5968 0.2036 13 6 3.5690 -5.8201 0.3243 14 6 4.3853 -7.0813 0.4420 15 7 4.6568 -7.3585 1.8588 16 6 5.2410 -8.6936 2.0310 17 6 4.1343 -9.7399 1.8454 18 1 3.6635 -9.6098 0.8711 19 6 4.7284 -11.1460 1.9495 20 8 3.7169 -12.1132 1.6607 21 8 3.1666 -9.5452 2.8820 22 6 2.7801 -8.2623 3.1239 23 6 1.6396 -8.0407 3.8829 24 6 1.2251 -6.7510 4.1547 25 6 1.9472 -5.6758 3.6707 26 6 3.0827 -5.8879 2.9145 27 6 3.5056 -7.1833 2.6333 28 6 2.1877 -5.8890 0.3313 29 6 1.4369 -4.7344 0.2293 30 1 -0.4851 0.8400 -0.0004 31 1 3.9529 -2.4842 0.0005 32 1 5.2815 -4.5467 0.1935 33 1 5.3279 -6.9552 -0.0906 34 1 3.8318 -7.9143 0.0084 35 1 5.6637 -8.7818 3.0318 36 1 6.0228 -8.8524 1.2883 37 1 5.1072 -11.3067 2.9589 38 1 5.5446 -11.2494 1.2344 39 1 4.0233 -13.0291 1.7085 40 1 1.0739 -8.8791 4.2619 41 1 0.3368 -6.5825 4.7453 42 1 1.6222 -4.6683 3.8843 43 1 3.6441 -5.0452 2.5387 44 1 1.6958 -6.8462 0.4208 45 1 0.3583 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759742629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:02 Heat of formation + Delta-G solvation = -60.354699 kcal Electronic energy + Delta-G solvation = -29963.897109 eV Core-core repulsion = 25912.074837 eV Total energy + Delta-G solvation = -4051.822272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.42287 -40.75018 -39.02717 -38.50204 -37.38961 -37.04770 -34.30921 -32.71092 -31.88975 -31.55878 -31.31526 -29.26629 -27.64630 -26.59047 -25.28304 -23.95599 -23.58225 -23.35387 -22.33738 -20.80998 -19.85179 -19.16831 -18.84041 -18.40715 -17.76084 -17.42685 -16.53341 -16.41461 -16.24568 -16.00375 -15.90042 -15.55770 -15.44826 -15.27345 -14.95588 -14.91610 -14.68646 -14.54202 -14.36603 -14.02535 -13.76186 -13.56780 -13.19973 -13.02679 -13.00347 -12.65165 -12.49119 -12.41874 -12.28762 -12.13681 -12.05586 -11.91034 -11.69362 -11.16928 -11.02254 -10.77804 -10.35041 -9.75891 -9.27529 -8.91811 -8.84069 -8.45984 -6.13816 0.36003 0.44447 0.62469 0.68915 1.35902 1.44555 1.53102 2.18121 2.18753 2.57041 2.84402 2.93075 3.06055 3.21139 3.50539 3.70208 3.79681 3.81751 3.96669 4.01445 4.15609 4.16409 4.20428 4.27268 4.36339 4.41289 4.48568 4.50018 4.55599 4.58313 4.65192 4.66720 4.79653 4.84317 5.04080 5.05385 5.15985 5.26786 5.28882 5.34102 5.55519 5.62563 5.70722 5.71907 5.78534 5.93699 6.03824 6.08086 6.19125 6.51090 6.89437 6.98973 7.79882 8.77127 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.002877 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.242092 B = 9731.443270 C =10296.146616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.022 4.022 3 Si 1.016 2.984 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.410 4.410 8 H 0.103 0.897 9 O -0.231 6.231 10 C 0.127 3.873 11 C -0.240 4.240 12 C -0.045 4.045 13 C -0.162 4.162 14 C 0.110 3.890 15 N -0.485 5.485 16 C 0.028 3.972 17 C 0.043 3.957 18 H 0.068 0.932 19 C 0.091 3.909 20 O -0.594 6.594 21 O -0.316 6.316 22 C 0.075 3.925 23 C -0.149 4.149 24 C -0.094 4.094 25 C -0.154 4.154 26 C -0.066 4.066 27 C 0.025 3.975 28 C -0.044 4.044 29 C -0.197 4.197 30 H 0.272 0.728 31 H 0.121 0.879 32 H 0.143 0.857 33 H 0.115 0.885 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.401 0.599 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.793 -21.426 4.830 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.836 3.164 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.486 4.486 8 H 0.120 0.880 9 O -0.137 6.137 10 C 0.076 3.924 11 C -0.259 4.259 12 C -0.064 4.064 13 C -0.163 4.163 14 C -0.013 4.013 15 N -0.201 5.201 16 C -0.100 4.100 17 C -0.015 4.015 18 H 0.086 0.914 19 C 0.013 3.987 20 O -0.403 6.403 21 O -0.231 6.231 22 C 0.028 3.972 23 C -0.168 4.168 24 C -0.112 4.112 25 C -0.173 4.173 26 C -0.086 4.086 27 C -0.072 4.072 28 C -0.063 4.063 29 C -0.216 4.216 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.161 0.839 33 H 0.133 0.867 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.153 0.847 37 H 0.085 0.915 38 H 0.121 0.879 39 H 0.252 0.748 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.377 -20.574 4.939 25.032 hybrid contribution -0.526 0.289 -0.313 0.677 sum 12.851 -20.285 4.626 24.455 Atomic orbital electron populations 1.70185 1.08045 1.28739 1.48948 1.26556 0.96783 1.02698 0.95929 0.84617 0.77876 0.74711 0.79222 1.18846 1.19777 1.17558 1.21807 0.92505 0.81329 1.52962 0.87965 1.83948 1.36050 1.12629 1.81111 1.19792 0.91518 0.87555 0.93488 1.21228 0.92869 1.00022 1.11794 1.20865 0.99880 0.90348 0.95264 1.19363 0.92826 0.95047 1.09066 1.21183 1.00117 0.93472 0.86565 1.59530 1.25029 1.27662 1.07902 1.23015 0.96695 0.84156 1.06121 1.23375 0.90568 0.97556 0.90015 0.91446 1.22193 0.89873 0.84711 1.01951 1.86503 1.39740 1.20389 1.93707 1.86335 1.59379 1.23145 1.54196 1.19158 0.94381 0.83425 1.00286 1.20589 0.95640 0.98046 1.02572 1.21100 0.99836 0.91043 0.99268 1.21069 0.96581 0.99436 1.00187 1.20972 0.96528 0.95415 0.95668 1.18551 0.93033 0.92611 1.02987 1.20547 0.93621 0.95871 0.96218 1.20195 0.99309 0.90531 1.11587 0.91909 0.86173 0.83883 0.86736 0.93333 0.88456 0.84743 0.91532 0.87891 0.74790 0.84350 0.83609 0.86720 0.86687 0.86815 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.56 13.67 21.61 0.30 -56.26 16 2 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 3 Si 1.02 42.66 29.55 68.60 2.03 44.69 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.41 -23.60 9.49 67.92 0.64 -22.96 16 8 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 9 O -0.23 -13.80 9.76 -22.68 -0.22 -14.02 16 10 C 0.13 6.23 6.65 22.58 0.15 6.38 16 11 C -0.24 -10.08 9.17 22.39 0.21 -9.88 16 12 C -0.05 -1.48 8.52 22.25 0.19 -1.30 16 13 C -0.16 -4.98 3.24 -19.84 -0.06 -5.04 16 14 C 0.11 2.51 5.26 85.56 0.45 2.96 16 15 N -0.48 -11.31 4.80 -698.70 -3.35 -14.67 16 16 C 0.03 0.44 5.32 86.47 0.46 0.90 16 17 C 0.04 0.81 3.10 30.74 0.10 0.90 16 18 H 0.07 1.44 6.58 -2.39 -0.02 1.43 16 19 C 0.09 1.09 6.74 71.98 0.49 1.58 16 20 O -0.59 -9.33 13.65 -146.48 -2.00 -11.32 16 21 O -0.32 -8.39 10.05 -92.77 -0.93 -9.32 16 22 C 0.07 2.14 6.47 22.57 0.15 2.29 16 23 C -0.15 -4.10 9.94 22.38 0.22 -3.88 16 24 C -0.09 -2.59 10.04 22.26 0.22 -2.37 16 25 C -0.15 -4.90 10.03 22.23 0.22 -4.68 16 26 C -0.07 -2.14 6.51 22.45 0.15 -2.00 16 27 C 0.02 0.71 4.40 38.25 0.17 0.88 16 28 C -0.04 -1.55 7.07 22.25 0.16 -1.39 16 29 C -0.20 -8.52 9.99 22.39 0.22 -8.30 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 32 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.11 1.99 8.08 -2.39 -0.02 1.97 16 34 H 0.05 1.07 6.39 -2.38 -0.02 1.05 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.13 1.20 8.02 -2.39 -0.02 1.18 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.40 2.05 9.12 -74.06 -0.68 1.37 16 40 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 41 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 42 H 0.11 3.78 8.06 -2.91 -0.02 3.76 16 43 H 0.12 4.10 6.04 -2.91 -0.02 4.08 16 44 H 0.11 3.77 8.06 -2.91 -0.02 3.75 16 45 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -76.45 366.39 0.77 -75.68 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.36 Total: 31.90 kcal Atomic # 6 Polarization: -51.28 SS G_CDS: 4.59 Total: -46.68 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -3.06 Total: -70.93 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -3.15 Total: -34.66 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -76.45 0.77 -75.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759742629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.330 kcal (2) G-P(sol) polarization free energy of solvation -76.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds