Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86795 * 120.00354 * 2 1 4 4 H 1.48494 * 109.47570 * 270.00736 * 3 2 1 5 5 H 1.48504 * 109.47106 * 30.00468 * 3 2 1 6 6 H 1.48498 * 109.47480 * 149.99902 * 3 2 1 7 7 C 1.38663 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99698 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99862 * 0.27014 * 7 2 1 10 10 C 1.35753 * 117.00112 * 174.59787 * 9 7 2 11 11 C 1.38880 * 120.06662 * 5.55092 * 10 9 7 12 12 C 1.38097 * 119.92842 * 179.74911 * 11 10 9 13 13 C 1.38303 * 120.06964 * 0.52765 * 12 11 10 14 14 C 1.50703 * 119.92954 * 179.76565 * 13 12 11 15 15 N 1.46893 * 109.47031 * 263.49831 * 14 13 12 16 16 C 1.46759 * 111.00327 * 51.21540 * 15 14 13 17 17 C 1.53421 * 108.59792 * 74.55668 * 16 15 14 18 18 H 1.08994 * 109.82377 * 303.65791 * 17 16 15 19 19 C 1.53003 * 109.77604 * 182.87745 * 17 16 15 20 20 O 1.42894 * 109.47022 * 176.56181 * 19 17 16 21 21 O 1.43144 * 107.89108 * 63.28660 * 17 16 15 22 22 C 1.36157 * 116.66526 * 314.65090 * 21 17 16 23 23 C 1.38774 * 118.73825 * 194.79894 * 22 21 17 24 24 C 1.38180 * 120.19953 * 180.27467 * 23 22 21 25 25 C 1.38257 * 120.03083 * 0.02562 * 24 23 22 26 26 C 1.38063 * 120.11447 * 359.90353 * 25 24 23 27 27 C 1.38967 * 121.37948 * 14.92191 * 22 21 17 28 28 C 1.38294 * 120.13678 * 359.74850 * 13 12 11 29 29 C 1.38102 * 120.07094 * 359.97438 * 28 13 12 30 30 H 0.97002 * 120.00376 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.03510 * 0.02562 * 11 10 9 32 32 H 1.08002 * 119.96698 * 180.27341 * 12 11 10 33 33 H 1.08995 * 109.47242 * 23.50165 * 14 13 12 34 34 H 1.09000 * 109.46722 * 143.49560 * 14 13 12 35 35 H 1.09000 * 109.61652 * 194.29687 * 16 15 14 36 36 H 1.09000 * 109.61073 * 314.82161 * 16 15 14 37 37 H 1.08994 * 109.47105 * 296.56492 * 19 17 16 38 38 H 1.08998 * 109.46682 * 56.56414 * 19 17 16 39 39 H 0.96703 * 114.00172 * 180.02562 * 20 19 17 40 40 H 1.07997 * 119.90169 * 0.30111 * 23 22 21 41 41 H 1.08009 * 119.98322 * 179.97438 * 24 23 22 42 42 H 1.07994 * 119.94330 * 179.90876 * 25 24 23 43 43 H 1.08005 * 119.87709 * 180.02562 * 26 25 24 44 44 H 1.08003 * 119.96542 * 179.97438 * 28 13 12 45 45 H 1.08001 * 120.03472 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0066 10 6 2.0697 -3.5040 -0.1206 11 6 3.4570 -3.4390 -0.1085 12 6 4.2019 -4.5965 -0.2195 13 6 3.5681 -5.8184 -0.3536 14 6 4.3842 -7.0790 -0.4798 15 7 4.5288 -7.4286 -1.8992 16 6 5.0105 -6.2811 -2.6771 17 6 6.5027 -6.0814 -2.3817 18 1 6.6537 -5.9561 -1.3096 19 6 7.0168 -4.8467 -3.1247 20 8 8.3856 -4.6204 -2.7823 21 8 7.2006 -7.2456 -2.8363 22 6 6.6543 -8.4504 -2.5139 23 6 7.4303 -9.5928 -2.6503 24 6 6.9044 -10.8316 -2.3371 25 6 5.6015 -10.9365 -1.8867 26 6 4.8237 -9.8045 -1.7469 27 6 5.3456 -8.5527 -2.0578 28 6 2.1869 -5.8858 -0.3718 29 6 1.4362 -4.7324 -0.2554 30 1 -0.4851 0.8400 0.0004 31 1 3.9525 -2.4847 -0.0079 32 1 5.2807 -4.5471 -0.2058 33 1 5.3698 -6.9190 -0.0428 34 1 3.8815 -7.8913 0.0451 35 1 4.8707 -6.4754 -3.7405 36 1 4.4577 -5.3866 -2.3902 37 1 6.9330 -5.0082 -4.1993 38 1 6.4228 -3.9781 -2.8403 39 1 8.7779 -3.8512 -3.2176 40 1 8.4483 -9.5133 -3.0020 41 1 7.5113 -11.7186 -2.4451 42 1 5.1915 -11.9056 -1.6438 43 1 3.8064 -9.8908 -1.3944 44 1 1.6948 -6.8414 -0.4770 45 1 0.3576 -4.7858 -0.2692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759742630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = -44.376382 kcal Electronic energy + Delta-G solvation = -29408.459843 eV Core-core repulsion = 25357.330443 eV Total energy + Delta-G solvation = -4051.129400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37385 -39.18788 -37.98016 -37.36637 -36.55600 -35.77151 -32.43414 -31.72263 -30.81949 -30.26434 -30.15318 -28.04186 -26.32786 -25.47294 -23.99495 -23.00594 -22.46516 -22.06546 -20.87781 -19.79646 -18.26371 -18.05575 -17.60136 -17.05786 -17.00403 -16.49317 -15.38096 -15.11916 -15.06151 -14.78700 -14.57718 -14.52818 -14.17872 -13.92146 -13.87019 -13.76298 -13.64110 -13.21090 -13.00500 -12.80182 -12.60293 -12.23417 -12.02165 -11.72558 -11.70871 -11.62701 -11.31738 -11.13137 -10.98295 -10.91380 -10.71882 -10.64981 -10.50475 -10.28922 -9.45808 -9.41728 -8.92755 -8.44584 -8.29429 -7.99509 -7.28776 -6.54191 -4.13250 1.18448 1.32095 2.08523 2.13986 3.05659 3.06728 3.07283 3.12178 3.57777 3.68135 3.86600 3.88820 4.48218 4.53426 4.69837 4.74642 4.91234 4.95908 4.99574 5.03844 5.13268 5.18424 5.20876 5.23643 5.28835 5.35282 5.41113 5.47149 5.60795 5.70737 5.78760 5.83379 5.88499 6.09127 6.11348 6.16421 6.30700 6.39978 6.54958 6.59029 6.75404 6.80467 6.94580 7.04298 7.15160 7.25142 7.33176 7.38829 7.41891 7.69725 7.90210 8.91112 9.59937 10.63445 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.002830 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.213065 B = 9892.499014 C =11325.634778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.159 3.841 11 C -0.234 4.234 12 C -0.066 4.066 13 C -0.194 4.194 14 C 0.114 3.886 15 N -0.477 5.477 16 C 0.019 3.981 17 C 0.056 3.944 18 H 0.081 0.919 19 C 0.086 3.914 20 O -0.567 6.567 21 O -0.301 6.301 22 C 0.088 3.912 23 C -0.135 4.135 24 C -0.104 4.104 25 C -0.141 4.141 26 C -0.085 4.085 27 C 0.030 3.970 28 C -0.047 4.047 29 C -0.194 4.194 30 H 0.271 0.729 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.381 0.619 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.114 0.886 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.928 -15.016 -5.304 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.104 3.896 11 C -0.253 4.253 12 C -0.085 4.085 13 C -0.195 4.195 14 C -0.010 4.010 15 N -0.193 5.193 16 C -0.109 4.109 17 C -0.002 4.002 18 H 0.099 0.901 19 C 0.008 3.992 20 O -0.372 6.372 21 O -0.215 6.215 22 C 0.040 3.960 23 C -0.154 4.154 24 C -0.122 4.122 25 C -0.160 4.160 26 C -0.105 4.105 27 C -0.067 4.067 28 C -0.066 4.066 29 C -0.213 4.213 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.120 0.880 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.135 0.865 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.229 0.771 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.132 0.868 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.046 -15.347 -5.165 20.182 hybrid contribution 1.101 1.643 -0.038 1.978 sum 13.147 -13.704 -5.203 19.690 Atomic orbital electron populations 1.70030 1.05996 1.27845 1.45504 1.25306 0.95844 0.98890 0.96399 0.85714 0.78964 0.80026 0.78764 1.19820 1.20173 1.19158 1.21327 0.91790 0.80763 1.53076 0.89026 1.83984 1.34441 1.11558 1.77706 1.19416 0.90242 0.88099 0.91807 1.21108 0.93814 0.98748 1.11674 1.20624 0.98005 0.91923 0.97968 1.19003 0.93764 0.93040 1.13713 1.21020 0.98005 0.96352 0.85576 1.59396 1.45817 1.03373 1.10746 1.22996 0.92170 0.96219 0.99505 1.23129 0.93470 0.84049 0.99565 0.90110 1.22121 0.83468 0.95086 0.98541 1.86520 1.25337 1.52709 1.72640 1.86350 1.50229 1.11680 1.73240 1.19129 0.90652 0.86119 1.00082 1.20438 0.99948 0.90315 1.04731 1.20888 0.95709 0.96460 0.99172 1.20928 0.94489 0.98234 1.02359 1.20846 0.99851 0.90078 0.99742 1.18881 0.89431 0.92798 1.05545 1.20461 0.92611 0.96877 0.96608 1.20240 0.99707 0.90329 1.11018 0.91883 0.85492 0.87969 0.94344 0.89849 0.89242 0.86460 0.92396 0.90744 0.77139 0.85453 0.85612 0.85787 0.85284 0.86803 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.55 13.67 55.48 0.76 -23.79 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.83 29.55 -169.99 -5.02 14.81 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.39 -10.57 9.49 30.89 0.29 -10.28 16 8 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 9 O -0.17 -4.78 9.76 0.05 0.00 -4.78 16 10 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 11 C -0.23 -4.73 9.17 -39.40 -0.36 -5.09 16 12 C -0.07 -1.12 8.05 -39.61 -0.32 -1.44 16 13 C -0.19 -3.08 4.15 -104.58 -0.43 -3.51 16 14 C 0.11 1.57 4.80 -4.98 -0.02 1.54 16 15 N -0.48 -6.51 4.71 -172.19 -0.81 -7.32 16 16 C 0.02 0.25 4.95 -3.68 -0.02 0.23 16 17 C 0.06 0.73 3.10 -26.51 -0.08 0.65 16 18 H 0.08 1.14 6.34 -51.93 -0.33 0.81 16 19 C 0.09 0.95 6.74 37.16 0.25 1.20 16 20 O -0.57 -6.45 13.63 -39.39 -0.54 -6.99 16 21 O -0.30 -4.36 10.03 -24.40 -0.24 -4.61 16 22 C 0.09 1.20 6.47 -39.11 -0.25 0.95 16 23 C -0.14 -1.58 9.94 -39.40 -0.39 -1.97 16 24 C -0.10 -1.01 10.04 -39.60 -0.40 -1.41 16 25 C -0.14 -1.38 10.03 -39.64 -0.40 -1.78 16 26 C -0.09 -0.98 9.53 -39.31 -0.37 -1.35 16 27 C 0.03 0.40 5.11 -83.59 -0.43 -0.03 16 28 C -0.05 -0.79 9.72 -39.61 -0.38 -1.17 16 29 C -0.19 -3.88 9.99 -39.40 -0.39 -4.27 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.13 2.59 5.64 -52.49 -0.30 2.29 16 32 H 0.10 1.52 7.51 -52.49 -0.39 1.12 16 33 H 0.04 0.53 6.92 -51.93 -0.36 0.17 16 34 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.12 1.66 5.30 -51.93 -0.28 1.38 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.38 2.46 9.12 45.56 0.42 2.87 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 43 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 44 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 45 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -31.67 371.15 -9.20 -40.87 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -4.86 Total: 9.59 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -4.07 Total: -23.37 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: -0.05 Total: -31.11 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.78 Total: -16.38 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.67 -9.20 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759742630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.505 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds