Wall clock time and date at job start Sat Apr 11 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86795 * 120.00354 * 2 1 4 4 H 1.48494 * 109.47570 * 270.00736 * 3 2 1 5 5 H 1.48504 * 109.47106 * 30.00468 * 3 2 1 6 6 H 1.48498 * 109.47480 * 149.99902 * 3 2 1 7 7 C 1.38663 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99698 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99862 * 0.27014 * 7 2 1 10 10 C 1.35753 * 117.00112 * 174.59787 * 9 7 2 11 11 C 1.38880 * 120.06662 * 5.55092 * 10 9 7 12 12 C 1.38097 * 119.92842 * 179.74911 * 11 10 9 13 13 C 1.38303 * 120.06964 * 0.52765 * 12 11 10 14 14 C 1.50703 * 119.92954 * 179.76565 * 13 12 11 15 15 N 1.46893 * 109.47031 * 263.49831 * 14 13 12 16 16 C 1.46759 * 111.00327 * 51.21540 * 15 14 13 17 17 C 1.53421 * 108.59792 * 74.55668 * 16 15 14 18 18 H 1.08994 * 109.82377 * 303.65791 * 17 16 15 19 19 C 1.53003 * 109.77604 * 182.87745 * 17 16 15 20 20 O 1.42894 * 109.47022 * 176.56181 * 19 17 16 21 21 O 1.43144 * 107.89108 * 63.28660 * 17 16 15 22 22 C 1.36157 * 116.66526 * 314.65090 * 21 17 16 23 23 C 1.38774 * 118.73825 * 194.79894 * 22 21 17 24 24 C 1.38180 * 120.19953 * 180.27467 * 23 22 21 25 25 C 1.38257 * 120.03083 * 0.02562 * 24 23 22 26 26 C 1.38063 * 120.11447 * 359.90353 * 25 24 23 27 27 C 1.38967 * 121.37948 * 14.92191 * 22 21 17 28 28 C 1.38294 * 120.13678 * 359.74850 * 13 12 11 29 29 C 1.38102 * 120.07094 * 359.97438 * 28 13 12 30 30 H 0.97002 * 120.00376 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.03510 * 0.02562 * 11 10 9 32 32 H 1.08002 * 119.96698 * 180.27341 * 12 11 10 33 33 H 1.08995 * 109.47242 * 23.50165 * 14 13 12 34 34 H 1.09000 * 109.46722 * 143.49560 * 14 13 12 35 35 H 1.09000 * 109.61652 * 194.29687 * 16 15 14 36 36 H 1.09000 * 109.61073 * 314.82161 * 16 15 14 37 37 H 1.08994 * 109.47105 * 296.56492 * 19 17 16 38 38 H 1.08998 * 109.46682 * 56.56414 * 19 17 16 39 39 H 0.96703 * 114.00172 * 180.02562 * 20 19 17 40 40 H 1.07997 * 119.90169 * 0.30111 * 23 22 21 41 41 H 1.08009 * 119.98322 * 179.97438 * 24 23 22 42 42 H 1.07994 * 119.94330 * 179.90876 * 25 24 23 43 43 H 1.08005 * 119.87709 * 180.02562 * 26 25 24 44 44 H 1.08003 * 119.96542 * 179.97438 * 28 13 12 45 45 H 1.08001 * 120.03472 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0066 10 6 2.0697 -3.5040 -0.1206 11 6 3.4570 -3.4390 -0.1085 12 6 4.2019 -4.5965 -0.2195 13 6 3.5681 -5.8184 -0.3536 14 6 4.3842 -7.0790 -0.4798 15 7 4.5288 -7.4286 -1.8992 16 6 5.0105 -6.2811 -2.6771 17 6 6.5027 -6.0814 -2.3817 18 1 6.6537 -5.9561 -1.3096 19 6 7.0168 -4.8467 -3.1247 20 8 8.3856 -4.6204 -2.7823 21 8 7.2006 -7.2456 -2.8363 22 6 6.6543 -8.4504 -2.5139 23 6 7.4303 -9.5928 -2.6503 24 6 6.9044 -10.8316 -2.3371 25 6 5.6015 -10.9365 -1.8867 26 6 4.8237 -9.8045 -1.7469 27 6 5.3456 -8.5527 -2.0578 28 6 2.1869 -5.8858 -0.3718 29 6 1.4362 -4.7324 -0.2554 30 1 -0.4851 0.8400 0.0004 31 1 3.9525 -2.4847 -0.0079 32 1 5.2807 -4.5471 -0.2058 33 1 5.3698 -6.9190 -0.0428 34 1 3.8815 -7.8913 0.0451 35 1 4.8707 -6.4754 -3.7405 36 1 4.4577 -5.3866 -2.3902 37 1 6.9330 -5.0082 -4.1993 38 1 6.4228 -3.9781 -2.8403 39 1 8.7779 -3.8512 -3.2176 40 1 8.4483 -9.5133 -3.0020 41 1 7.5113 -11.7186 -2.4451 42 1 5.1915 -11.9056 -1.6438 43 1 3.8064 -9.8908 -1.3944 44 1 1.6948 -6.8414 -0.4770 45 1 0.3576 -4.7858 -0.2692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759742630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:06 Heat of formation + Delta-G solvation = -65.968806 kcal Electronic energy + Delta-G solvation = -29409.396161 eV Core-core repulsion = 25357.330443 eV Total energy + Delta-G solvation = -4052.065718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36859 -40.79201 -38.91263 -38.75473 -37.41996 -37.06709 -34.32607 -32.66918 -32.08225 -31.76051 -31.15901 -29.09291 -27.71220 -27.04971 -25.18049 -23.94868 -23.63617 -23.34003 -22.27705 -20.85753 -19.86394 -19.18477 -18.87277 -18.41988 -17.95630 -17.44754 -16.59070 -16.50081 -16.23175 -16.08750 -15.90693 -15.54880 -15.42179 -15.36693 -15.12340 -14.93121 -14.75446 -14.44225 -14.25506 -14.06152 -13.96878 -13.58155 -13.21902 -13.05999 -12.88794 -12.58640 -12.55836 -12.44388 -12.35432 -12.21358 -12.12862 -11.98191 -11.77507 -11.20077 -11.11813 -10.80499 -10.37848 -9.80923 -9.35155 -9.10437 -8.80130 -8.48043 -6.16077 0.29554 0.45996 0.55491 0.64025 1.35239 1.43657 1.52126 2.13278 2.16694 2.53199 2.80846 2.87155 2.99537 3.18677 3.49574 3.61190 3.70253 3.73339 3.92431 3.97098 4.10238 4.14833 4.17088 4.22302 4.30882 4.34115 4.44400 4.48868 4.52022 4.57190 4.59272 4.72148 4.74834 4.79506 5.02542 5.03842 5.12631 5.23399 5.25834 5.31340 5.53391 5.59716 5.64902 5.68032 5.76782 5.89137 6.01415 6.05962 6.15940 6.45850 6.78838 6.96837 7.76845 8.74939 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.002830 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.213065 B = 9892.499014 C =11325.634778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.021 4.021 3 Si 1.016 2.984 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.412 4.412 8 H 0.103 0.897 9 O -0.230 6.230 10 C 0.122 3.878 11 C -0.237 4.237 12 C -0.059 4.059 13 C -0.164 4.164 14 C 0.119 3.881 15 N -0.480 5.480 16 C 0.023 3.977 17 C 0.058 3.942 18 H 0.068 0.932 19 C 0.087 3.913 20 O -0.586 6.586 21 O -0.317 6.317 22 C 0.062 3.938 23 C -0.147 4.147 24 C -0.095 4.095 25 C -0.136 4.136 26 C -0.092 4.092 27 C 0.010 3.990 28 C -0.039 4.039 29 C -0.202 4.202 30 H 0.273 0.727 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.040 0.960 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.401 0.599 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.140 0.860 44 H 0.147 0.853 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.318 -17.760 -5.650 24.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.071 3.929 11 C -0.257 4.257 12 C -0.077 4.077 13 C -0.165 4.165 14 C -0.006 4.006 15 N -0.196 5.196 16 C -0.105 4.105 17 C 0.000 4.000 18 H 0.086 0.914 19 C 0.009 3.991 20 O -0.395 6.395 21 O -0.232 6.232 22 C 0.014 3.986 23 C -0.166 4.166 24 C -0.114 4.114 25 C -0.154 4.154 26 C -0.111 4.111 27 C -0.086 4.086 28 C -0.057 4.057 29 C -0.222 4.222 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.058 0.942 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.252 0.748 40 H 0.151 0.849 41 H 0.175 0.825 42 H 0.172 0.828 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 14.483 -18.146 -5.524 23.865 hybrid contribution 0.547 2.022 0.015 2.095 sum 15.031 -16.123 -5.509 22.721 Atomic orbital electron populations 1.70177 1.08041 1.28823 1.48711 1.26562 0.96793 1.02710 0.95859 0.84617 0.77870 0.74691 0.79267 1.18758 1.19788 1.17597 1.21810 0.92515 0.81340 1.53149 0.87949 1.83953 1.36010 1.12670 1.80953 1.19929 0.91524 0.87928 0.93525 1.21162 0.92983 0.99774 1.11733 1.20844 0.99123 0.91100 0.96667 1.19356 0.93732 0.93837 1.09612 1.21007 0.97740 0.95382 0.86426 1.59395 1.46443 1.03657 1.10131 1.22906 0.92320 0.95659 0.99593 1.23114 0.93269 0.84574 0.99073 0.91373 1.22130 0.83564 0.94546 0.98867 1.86462 1.25501 1.54169 1.73331 1.86329 1.50860 1.12288 1.73690 1.19466 0.91379 0.86335 1.01386 1.20720 1.00322 0.90629 1.04951 1.21295 0.96043 0.96708 0.97330 1.21321 0.94250 0.99014 1.00824 1.21097 1.00611 0.89887 0.99529 1.19003 0.89501 0.93096 1.06971 1.20791 0.92934 0.97002 0.94994 1.20463 1.00053 0.90530 1.11130 0.91833 0.86170 0.85443 0.94172 0.88005 0.89185 0.87597 0.91439 0.89857 0.74829 0.84852 0.82507 0.82779 0.84213 0.83555 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.49 13.67 21.61 0.30 -55.20 16 2 C -0.02 -1.19 5.49 84.84 0.47 -0.73 16 3 Si 1.02 41.72 29.55 68.60 2.03 43.74 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.41 -23.25 9.49 67.92 0.64 -22.61 16 8 H 0.10 5.26 5.20 -2.91 -0.02 5.24 16 9 O -0.23 -13.40 9.76 -22.72 -0.22 -13.62 16 10 C 0.12 5.78 6.65 22.58 0.15 5.93 16 11 C -0.24 -9.70 9.17 22.39 0.21 -9.49 16 12 C -0.06 -1.90 8.05 22.25 0.18 -1.72 16 13 C -0.16 -4.85 4.15 -19.83 -0.08 -4.94 16 14 C 0.12 2.90 4.80 85.56 0.41 3.31 16 15 N -0.48 -11.99 4.71 -698.68 -3.29 -15.28 16 16 C 0.02 0.58 4.95 86.47 0.43 1.01 16 17 C 0.06 1.43 3.10 30.74 0.10 1.53 16 18 H 0.07 1.83 6.34 -2.39 -0.02 1.81 16 19 C 0.09 1.81 6.74 71.98 0.49 2.29 16 20 O -0.59 -12.53 13.63 -145.01 -1.98 -14.51 16 21 O -0.32 -8.84 10.03 -91.36 -0.92 -9.75 16 22 C 0.06 1.58 6.47 22.57 0.15 1.72 16 23 C -0.15 -3.09 9.94 22.38 0.22 -2.87 16 24 C -0.10 -1.50 10.04 22.26 0.22 -1.27 16 25 C -0.14 -2.09 10.03 22.23 0.22 -1.87 16 26 C -0.09 -1.79 9.53 22.45 0.21 -1.58 16 27 C 0.01 0.25 5.11 38.25 0.20 0.45 16 28 C -0.04 -1.23 9.72 22.25 0.22 -1.02 16 29 C -0.20 -8.21 9.99 22.39 0.22 -7.99 16 30 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.12 5.01 5.64 -2.91 -0.02 5.00 16 32 H 0.13 3.51 7.51 -2.91 -0.02 3.49 16 33 H 0.04 1.00 6.92 -2.39 -0.02 0.99 16 34 H 0.10 2.18 7.92 -2.39 -0.02 2.16 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.11 2.85 5.30 -2.39 -0.01 2.84 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.40 4.55 9.12 -74.06 -0.68 3.88 16 40 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 41 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 45 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -73.20 371.15 0.92 -72.28 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.36 Total: 32.16 kcal Atomic # 6 Polarization: -44.47 SS G_CDS: 4.65 Total: -39.82 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -2.99 Total: -70.48 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -3.11 Total: -37.89 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -73.20 0.92 -72.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759742630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.311 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds