Wall clock time and date at job start Sat Apr 11 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46758 * 2 1 4 4 O 1.45199 * 109.46754 * 240.00762 * 2 1 3 5 5 C 1.34864 * 117.00329 * 88.66051 * 4 2 1 6 6 O 1.21592 * 120.00006 * 5.15657 * 5 4 2 7 7 C 1.46718 * 120.00366 * 185.15280 * 5 4 2 8 8 C 1.36212 * 125.45349 * 174.13189 * 7 5 4 9 9 C 1.41650 * 107.74693 * 180.02562 * 8 7 5 10 10 C 1.40045 * 133.34151 * 180.02562 * 9 8 7 11 11 C 1.36565 * 119.83394 * 179.97438 * 10 9 8 12 12 C 1.38863 * 120.60000 * 359.97438 * 11 10 9 13 13 C 1.37843 * 120.64075 * 359.97438 * 12 11 10 14 14 C 1.39099 * 119.81352 * 0.02562 * 13 12 11 15 15 N 1.37818 * 133.15050 * 180.02562 * 14 13 12 16 16 C 1.36876 * 125.61980 * 359.71363 * 15 14 13 17 17 H 1.08004 * 120.00084 * 141.06698 * 16 15 14 18 18 C 1.39017 * 119.99771 * 321.05943 * 16 15 14 19 19 N 1.31336 * 120.00502 * 341.67140 * 18 16 15 20 20 Si 1.86801 * 119.99931 * 161.66998 * 18 16 15 21 21 H 1.48502 * 109.47275 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47276 * 120.00078 * 20 18 16 23 23 H 1.48495 * 109.47373 * 240.00424 * 20 18 16 24 24 C 1.50687 * 109.47343 * 120.00624 * 2 1 3 25 25 N 1.31078 * 126.66425 * 74.68285 * 24 2 1 26 26 N 1.28836 * 107.99012 * 179.89360 * 25 24 2 27 27 N 1.28740 * 109.40243 * 0.38122 * 26 25 24 28 28 N 1.29023 * 108.80409 * 359.76567 * 27 26 25 29 29 C 1.46494 * 126.43528 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.46938 * 299.99627 * 1 2 3 31 31 H 1.09007 * 109.47443 * 59.99444 * 1 2 3 32 32 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 33 33 H 1.08001 * 126.12082 * 0.05491 * 8 7 5 34 34 H 1.08002 * 120.07958 * 359.96574 * 10 9 8 35 35 H 1.07991 * 119.70405 * 180.02562 * 11 10 9 36 36 H 1.08002 * 119.68091 * 180.02562 * 12 11 10 37 37 H 1.07999 * 120.09422 * 179.97438 * 13 12 11 38 38 H 0.96997 * 120.00549 * 185.05340 * 19 18 16 39 39 H 1.09004 * 109.46922 * 270.02340 * 29 28 27 40 40 H 1.09005 * 109.47552 * 30.02099 * 29 28 27 41 41 H 1.09001 * 109.47808 * 150.01947 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6843 -1.1857 5 6 2.1915 0.0628 -2.2943 6 8 2.0389 1.2682 -2.2460 7 6 2.5690 -0.5787 -3.5587 8 6 2.6665 0.0478 -4.7642 9 6 3.0541 -0.9197 -5.7235 10 6 3.3050 -0.8616 -7.1000 11 6 3.6727 -1.9923 -7.7719 12 6 3.8014 -3.2021 -7.1024 13 6 3.5609 -3.2843 -5.7476 14 6 3.1851 -2.1462 -5.0416 15 7 2.8844 -1.9155 -3.7166 16 6 2.8896 -2.8563 -2.7224 17 1 3.2601 -2.6021 -1.7403 18 6 2.4177 -4.1389 -2.9769 19 7 1.6498 -4.3616 -4.0188 20 14 2.8759 -5.5459 -1.8367 21 1 3.7438 -5.0358 -0.7450 22 1 1.6424 -6.1330 -1.2544 23 1 3.6054 -6.5873 -2.6039 24 6 2.0323 -0.7105 1.2303 25 7 2.0314 -2.0040 1.4423 26 7 2.5431 -2.2169 2.6054 27 7 2.8631 -1.0923 3.1442 28 7 2.5637 -0.1396 2.3273 29 6 2.7639 1.2941 2.5518 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.4818 1.0947 -4.9544 34 1 3.2077 0.0750 -7.6290 35 1 3.8660 -1.9450 -8.8333 36 1 4.0934 -4.0870 -7.6484 37 1 3.6632 -4.2298 -5.2359 38 1 1.2609 -5.2395 -4.1560 39 1 1.8776 1.7147 3.0270 40 1 3.6284 1.4434 3.1988 41 1 2.9348 1.7912 1.5969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787698584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:15 Heat of formation + Delta-G solvation = 103.186685 kcal Electronic energy + Delta-G solvation = -29726.345869 eV Core-core repulsion = 25610.367692 eV Total energy + Delta-G solvation = -4115.978177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.22649 -40.63425 -39.61180 -36.50238 -35.97050 -35.77156 -33.65241 -33.49084 -30.80222 -30.72977 -29.07997 -28.58772 -28.22748 -25.19878 -24.94680 -23.96186 -23.14508 -21.50916 -21.03591 -20.36219 -19.36112 -18.20099 -17.64693 -17.43420 -17.24656 -16.49583 -15.79829 -15.38242 -15.05450 -14.78216 -14.63851 -14.17268 -14.00776 -13.63768 -13.43956 -13.14387 -13.03298 -12.94319 -12.75609 -12.67781 -12.28423 -12.13908 -11.98348 -11.74405 -11.52067 -11.30853 -11.13453 -11.02684 -10.94941 -10.79466 -10.68888 -10.50563 -10.28637 -10.23438 -10.09540 -9.83511 -9.19353 -8.71410 -7.22657 -6.93875 -6.66927 -4.47445 1.05973 1.56028 1.74522 2.22000 2.72491 2.78710 2.97526 3.05009 3.11140 3.18589 3.73500 3.83888 4.03252 4.06996 4.42389 4.46063 4.57873 4.65821 4.76608 4.87411 5.01913 5.03549 5.24504 5.30589 5.61227 5.63629 5.69201 5.80604 5.92822 5.95431 6.06791 6.10492 6.34755 6.47967 6.55136 6.69908 6.82670 6.98370 7.04967 7.13144 7.43087 7.53740 7.62047 7.84085 7.98194 8.24068 8.35642 8.58572 8.74250 9.21362 10.14418 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.004360 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.917743 B = 6420.043397 C = 8071.952532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 H 0.106 0.894 4 O -0.310 6.310 5 C 0.549 3.451 6 O -0.528 6.528 7 C -0.028 4.028 8 C -0.161 4.161 9 C -0.129 4.129 10 C -0.087 4.087 11 C -0.155 4.155 12 C -0.150 4.150 13 C -0.049 4.049 14 C 0.088 3.912 15 N -0.231 5.231 16 C -0.337 4.337 17 H 0.119 0.881 18 C 0.060 3.940 19 N -0.813 5.813 20 Si 0.927 3.073 21 H -0.256 1.256 22 H -0.270 1.270 23 H -0.273 1.273 24 C 0.185 3.815 25 N -0.261 5.261 26 N -0.075 5.075 27 N -0.096 5.096 28 N -0.305 5.305 29 C 0.074 3.926 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.284 0.716 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 8.854 6.532 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.111 3.889 3 H 0.124 0.876 4 O -0.225 6.225 5 C 0.398 3.602 6 O -0.418 6.418 7 C -0.142 4.142 8 C -0.189 4.189 9 C -0.134 4.134 10 C -0.106 4.106 11 C -0.174 4.174 12 C -0.171 4.171 13 C -0.068 4.068 14 C -0.028 4.028 15 N 0.108 4.892 16 C -0.465 4.465 17 H 0.136 0.864 18 C -0.155 4.155 19 N -0.441 5.441 20 Si 0.750 3.250 21 H -0.180 1.180 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.094 4.094 25 N -0.111 5.111 26 N -0.069 5.069 27 N -0.081 5.081 28 N -0.108 5.108 29 C -0.067 4.067 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.151 0.849 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.152 7.623 7.555 10.733 hybrid contribution -0.178 0.257 0.227 0.386 sum -0.026 7.879 7.782 11.075 Atomic orbital electron populations 1.22181 0.91340 1.04974 1.03554 1.20551 0.95366 0.94430 0.78561 0.87640 1.87090 1.77063 1.40281 1.18071 1.20175 0.72874 0.84568 0.82575 1.90773 1.51451 1.14673 1.84950 1.18914 1.17031 0.87085 0.91131 1.20240 1.10756 0.98335 0.89602 1.17903 1.08747 0.93144 0.93567 1.20042 1.00890 0.97482 0.92168 1.20287 1.05387 0.93245 0.98465 1.20569 1.05658 0.97139 0.93728 1.20109 0.97596 0.96154 0.92938 1.18127 1.05370 0.94852 0.84434 1.40187 1.38378 1.04649 1.05961 1.20033 1.43795 0.89572 0.93149 0.86382 1.25638 0.93454 0.99471 0.96895 1.69958 1.22894 1.24590 1.26637 0.85829 0.79683 0.79478 0.79974 1.17968 1.19515 1.19846 1.25636 1.00462 0.90563 0.92715 1.75205 1.15950 1.11140 1.08776 1.78689 1.11352 1.15138 1.01753 1.78865 1.18891 0.92397 1.17970 1.48418 1.40095 1.10471 1.11817 1.22478 1.05707 0.72711 1.05820 0.90909 0.89870 0.89871 0.84880 0.87676 0.87826 0.87588 0.86800 0.90544 0.88141 0.87187 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.52 37.16 0.35 -1.71 16 2 C 0.17 2.52 2.99 -27.89 -0.08 2.44 16 3 H 0.11 1.30 5.85 -51.93 -0.30 1.00 16 4 O -0.31 -6.17 7.70 -40.94 -0.32 -6.48 16 5 C 0.55 11.57 7.86 34.16 0.27 11.84 16 6 O -0.53 -10.65 16.10 -19.34 -0.31 -10.96 16 7 C -0.03 -0.67 6.76 -82.27 -0.56 -1.22 16 8 C -0.16 -3.61 10.55 -39.01 -0.41 -4.02 16 9 C -0.13 -2.96 6.16 -106.90 -0.66 -3.62 16 10 C -0.09 -1.72 10.06 -39.51 -0.40 -2.12 16 11 C -0.15 -2.91 9.97 -39.95 -0.40 -3.31 16 12 C -0.15 -3.01 10.02 -39.49 -0.40 -3.40 16 13 C -0.05 -1.13 8.59 -39.41 -0.34 -1.46 16 14 C 0.09 2.19 6.08 -83.83 -0.51 1.68 16 15 N -0.23 -5.85 2.83 -56.10 -0.16 -6.01 16 16 C -0.34 -8.60 8.69 -15.01 -0.13 -8.73 16 17 H 0.12 3.03 6.93 -52.48 -0.36 2.67 16 18 C 0.06 1.47 4.40 -17.48 -0.08 1.40 16 19 N -0.81 -20.67 11.04 55.50 0.61 -20.06 16 20 Si 0.93 19.72 29.59 -169.99 -5.03 14.69 16 21 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 C 0.18 2.85 7.03 -155.43 -1.09 1.75 16 25 N -0.26 -4.96 12.36 32.70 0.40 -4.55 16 26 N -0.08 -1.38 13.43 60.35 0.81 -0.57 16 27 N -0.10 -1.46 13.29 60.35 0.80 -0.65 16 28 N -0.30 -3.80 3.75 -65.03 -0.24 -4.04 16 29 C 0.07 0.45 11.21 59.84 0.67 1.12 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 34 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.11 2.71 6.51 -52.49 -0.34 2.37 16 38 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 0.52 7.01 -51.93 -0.36 0.15 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -31.88 358.85 -6.09 -37.97 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.31 Total: 4.63 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -3.76 Total: -9.37 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 2.23 Total: -35.89 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.63 Total: -17.44 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.88 -6.09 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787698584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.159 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds