Wall clock time and date at job start Sat Apr 11 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46758 * 2 1 4 4 O 1.45199 * 109.46754 * 240.00762 * 2 1 3 5 5 C 1.34864 * 117.00329 * 88.66051 * 4 2 1 6 6 O 1.21592 * 120.00006 * 5.15657 * 5 4 2 7 7 C 1.46718 * 120.00366 * 185.15280 * 5 4 2 8 8 C 1.36212 * 125.45349 * 174.13189 * 7 5 4 9 9 C 1.41650 * 107.74693 * 180.02562 * 8 7 5 10 10 C 1.40045 * 133.34151 * 180.02562 * 9 8 7 11 11 C 1.36565 * 119.83394 * 179.97438 * 10 9 8 12 12 C 1.38863 * 120.60000 * 359.97438 * 11 10 9 13 13 C 1.37843 * 120.64075 * 359.97438 * 12 11 10 14 14 C 1.39099 * 119.81352 * 0.02562 * 13 12 11 15 15 N 1.37818 * 133.15050 * 180.02562 * 14 13 12 16 16 C 1.36876 * 125.61980 * 359.71363 * 15 14 13 17 17 H 1.08004 * 120.00084 * 141.06698 * 16 15 14 18 18 C 1.39017 * 119.99771 * 321.05943 * 16 15 14 19 19 N 1.31336 * 120.00502 * 341.67140 * 18 16 15 20 20 Si 1.86801 * 119.99931 * 161.66998 * 18 16 15 21 21 H 1.48502 * 109.47275 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47276 * 120.00078 * 20 18 16 23 23 H 1.48495 * 109.47373 * 240.00424 * 20 18 16 24 24 C 1.50687 * 109.47343 * 120.00624 * 2 1 3 25 25 N 1.31078 * 126.66425 * 74.68285 * 24 2 1 26 26 N 1.28836 * 107.99012 * 179.89360 * 25 24 2 27 27 N 1.28740 * 109.40243 * 0.38122 * 26 25 24 28 28 N 1.29023 * 108.80409 * 359.76567 * 27 26 25 29 29 C 1.46494 * 126.43528 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.46938 * 299.99627 * 1 2 3 31 31 H 1.09007 * 109.47443 * 59.99444 * 1 2 3 32 32 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 33 33 H 1.08001 * 126.12082 * 0.05491 * 8 7 5 34 34 H 1.08002 * 120.07958 * 359.96574 * 10 9 8 35 35 H 1.07991 * 119.70405 * 180.02562 * 11 10 9 36 36 H 1.08002 * 119.68091 * 180.02562 * 12 11 10 37 37 H 1.07999 * 120.09422 * 179.97438 * 13 12 11 38 38 H 0.96997 * 120.00549 * 185.05340 * 19 18 16 39 39 H 1.09004 * 109.46922 * 270.02340 * 29 28 27 40 40 H 1.09005 * 109.47552 * 30.02099 * 29 28 27 41 41 H 1.09001 * 109.47808 * 150.01947 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6843 -1.1857 5 6 2.1915 0.0628 -2.2943 6 8 2.0389 1.2682 -2.2460 7 6 2.5690 -0.5787 -3.5587 8 6 2.6665 0.0478 -4.7642 9 6 3.0541 -0.9197 -5.7235 10 6 3.3050 -0.8616 -7.1000 11 6 3.6727 -1.9923 -7.7719 12 6 3.8014 -3.2021 -7.1024 13 6 3.5609 -3.2843 -5.7476 14 6 3.1851 -2.1462 -5.0416 15 7 2.8844 -1.9155 -3.7166 16 6 2.8896 -2.8563 -2.7224 17 1 3.2601 -2.6021 -1.7403 18 6 2.4177 -4.1389 -2.9769 19 7 1.6498 -4.3616 -4.0188 20 14 2.8759 -5.5459 -1.8367 21 1 3.7438 -5.0358 -0.7450 22 1 1.6424 -6.1330 -1.2544 23 1 3.6054 -6.5873 -2.6039 24 6 2.0323 -0.7105 1.2303 25 7 2.0314 -2.0040 1.4423 26 7 2.5431 -2.2169 2.6054 27 7 2.8631 -1.0923 3.1442 28 7 2.5637 -0.1396 2.3273 29 6 2.7639 1.2941 2.5518 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.4818 1.0947 -4.9544 34 1 3.2077 0.0750 -7.6290 35 1 3.8660 -1.9450 -8.8333 36 1 4.0934 -4.0870 -7.6484 37 1 3.6632 -4.2298 -5.2359 38 1 1.2609 -5.2395 -4.1560 39 1 1.8776 1.7147 3.0270 40 1 3.6284 1.4434 3.1988 41 1 2.9348 1.7912 1.5969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787698584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:13 Heat of formation + Delta-G solvation = 84.927260 kcal Electronic energy + Delta-G solvation = -29727.137657 eV Core-core repulsion = 25610.367692 eV Total energy + Delta-G solvation = -4116.769966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -45.40660 -42.29803 -41.17264 -37.97486 -37.59867 -36.83328 -35.43465 -34.76780 -32.51786 -31.91458 -30.72318 -29.88472 -29.37877 -26.78497 -26.42247 -25.37904 -24.33591 -22.85268 -22.66081 -21.88471 -21.02820 -19.86721 -18.94162 -18.74511 -18.38154 -17.90454 -17.43361 -16.97908 -16.55336 -16.45481 -16.15643 -15.36918 -15.08829 -14.89994 -14.68514 -14.66388 -14.53121 -14.33264 -14.25278 -13.80765 -13.63815 -13.55100 -13.32587 -13.28142 -13.02868 -12.90784 -12.61102 -12.36517 -12.26158 -12.19741 -12.12562 -11.98191 -11.92080 -11.80414 -11.48061 -11.30478 -10.98224 -10.43958 -8.96360 -8.70657 -8.40314 -6.36417 -0.10065 -0.07010 0.73609 0.97205 1.08384 1.14802 1.32097 1.35817 1.45707 1.67033 2.09220 2.28488 2.59601 2.75630 2.85647 3.11849 3.35530 3.47485 3.68415 3.84592 4.05573 4.12366 4.19631 4.21296 4.43765 4.47900 4.49087 4.53709 4.57386 4.62970 4.73180 4.81287 4.91656 4.99000 5.04551 5.14017 5.18693 5.21988 5.35038 5.44895 5.73480 5.90428 5.96619 6.16953 6.28684 6.57151 6.64093 6.97919 7.36762 7.41700 8.33909 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.004360 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.917743 B = 6420.043397 C = 8071.952532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.137 0.863 4 O -0.332 6.332 5 C 0.554 3.446 6 O -0.521 6.521 7 C -0.054 4.054 8 C -0.156 4.156 9 C -0.151 4.151 10 C -0.084 4.084 11 C -0.152 4.152 12 C -0.133 4.133 13 C -0.088 4.088 14 C 0.066 3.934 15 N -0.257 5.257 16 C -0.357 4.357 17 H 0.103 0.897 18 C 0.032 3.968 19 N -0.843 5.843 20 Si 0.978 3.022 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.260 1.260 24 C 0.181 3.819 25 N -0.307 5.307 26 N -0.112 5.112 27 N -0.090 5.090 28 N -0.283 5.283 29 C 0.054 3.946 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.158 0.842 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.286 0.714 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 11.182 5.544 12.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.154 0.846 4 O -0.247 6.247 5 C 0.402 3.598 6 O -0.412 6.412 7 C -0.167 4.167 8 C -0.183 4.183 9 C -0.156 4.156 10 C -0.103 4.103 11 C -0.171 4.171 12 C -0.154 4.154 13 C -0.108 4.108 14 C -0.050 4.050 15 N 0.080 4.920 16 C -0.484 4.484 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.473 5.473 20 Si 0.800 3.200 21 H -0.194 1.194 22 H -0.194 1.194 23 H -0.184 1.184 24 C -0.098 4.098 25 N -0.157 5.157 26 N -0.105 5.105 27 N -0.076 5.076 28 N -0.088 5.088 29 C -0.084 4.084 30 H 0.131 0.869 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.175 0.825 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.154 0.846 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.350 9.973 6.583 11.955 hybrid contribution -0.186 -0.222 0.469 0.551 sum 0.163 9.751 7.052 12.035 Atomic orbital electron populations 1.22193 0.89808 1.04103 1.05446 1.21013 0.96568 0.95150 0.76445 0.84610 1.87041 1.77080 1.41433 1.19178 1.19851 0.72836 0.84488 0.82586 1.90744 1.51270 1.14088 1.85140 1.19511 1.17237 0.86971 0.92963 1.20615 1.09266 0.99307 0.89149 1.18344 1.09532 0.92518 0.95179 1.20502 0.99365 0.99547 0.90889 1.20772 1.03738 0.92015 1.00530 1.21029 1.02741 0.99077 0.92519 1.20183 1.00760 0.95329 0.94515 1.18652 1.05478 0.96230 0.84648 1.40300 1.40305 1.05143 1.06247 1.19900 1.45011 0.90476 0.93039 0.87977 1.26176 0.93116 1.00699 0.97868 1.70008 1.24265 1.25056 1.27958 0.85110 0.79141 0.77584 0.78189 1.19431 1.19381 1.18398 1.25601 1.00753 0.89933 0.93509 1.75096 1.17429 1.13616 1.09552 1.78650 1.13141 1.16607 1.02133 1.78738 1.18274 0.92464 1.18165 1.48816 1.37665 1.12096 1.10186 1.23184 1.08391 0.69078 1.07725 0.86880 0.89968 0.92148 0.82458 0.84107 0.83372 0.84645 0.88684 0.90353 0.84676 0.85152 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.52 71.98 0.69 -3.18 16 2 C 0.17 4.80 2.99 29.84 0.09 4.89 16 3 H 0.14 3.02 5.85 -2.38 -0.01 3.00 16 4 O -0.33 -13.53 7.70 -57.78 -0.45 -13.98 16 5 C 0.55 23.52 7.86 70.04 0.55 24.07 16 6 O -0.52 -20.40 16.10 19.53 0.31 -20.08 16 7 C -0.05 -2.62 6.76 39.88 0.27 -2.35 16 8 C -0.16 -6.86 10.55 22.64 0.24 -6.62 16 9 C -0.15 -6.82 6.16 -21.34 -0.13 -6.95 16 10 C -0.08 -3.09 10.06 22.32 0.22 -2.86 16 11 C -0.15 -5.14 9.97 22.03 0.22 -4.92 16 12 C -0.13 -5.08 10.02 22.33 0.22 -4.85 16 13 C -0.09 -4.15 8.59 22.38 0.19 -3.95 16 14 C 0.07 3.32 6.08 39.07 0.24 3.55 16 15 N -0.26 -13.58 2.83 -331.40 -0.94 -14.51 16 16 C -0.36 -19.21 8.69 84.09 0.73 -18.48 16 17 H 0.10 5.64 6.93 -2.91 -0.02 5.62 16 18 C 0.03 1.68 4.40 84.95 0.37 2.05 16 19 N -0.84 -44.81 11.04 21.67 0.24 -44.57 16 20 Si 0.98 42.61 29.59 68.60 2.03 44.64 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 24 C 0.18 5.52 7.03 138.13 0.97 6.49 16 25 N -0.31 -12.04 12.36 -50.46 -0.62 -12.67 16 26 N -0.11 -4.20 13.43 37.01 0.50 -3.71 16 27 N -0.09 -2.70 13.29 37.02 0.49 -2.21 16 28 N -0.28 -6.64 3.75 -359.65 -1.35 -7.99 16 29 C 0.05 0.48 11.21 127.77 1.43 1.91 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.16 5.95 8.06 -2.91 -0.02 5.92 16 34 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 35 H 0.15 3.72 8.06 -2.92 -0.02 3.70 16 36 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.10 4.73 6.51 -2.91 -0.02 4.72 16 38 H 0.29 14.08 8.31 -92.71 -0.77 13.31 16 39 H 0.14 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.12 0.74 7.01 -2.39 -0.02 0.72 16 Total: -1.00 -74.17 358.85 7.62 -66.55 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.09 Total: 19.72 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 6.31 Total: -11.19 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.68 Total: -85.65 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.13 Total: -34.06 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -74.17 7.62 -66.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787698584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.476 kcal (2) G-P(sol) polarization free energy of solvation -74.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds