Wall clock time and date at job start Sat Apr 11 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47364 * 2 1 4 4 O 1.45202 * 109.47144 * 120.00401 * 2 1 3 5 5 C 1.34871 * 116.99427 * 272.34049 * 4 2 1 6 6 O 1.21589 * 120.00220 * 5.00655 * 5 4 2 7 7 C 1.46712 * 119.99456 * 185.00382 * 5 4 2 8 8 C 1.36221 * 125.44819 * 184.64039 * 7 5 4 9 9 C 1.41653 * 107.74584 * 180.27961 * 8 7 5 10 10 C 1.40044 * 133.34316 * 179.76233 * 9 8 7 11 11 C 1.36564 * 119.83272 * 180.02562 * 10 9 8 12 12 C 1.38861 * 120.60577 * 359.95925 * 11 10 9 13 13 C 1.37846 * 120.63158 * 0.02562 * 12 11 10 14 14 C 1.39093 * 119.82043 * 0.02562 * 13 12 11 15 15 N 1.37821 * 133.15165 * 180.02562 * 14 13 12 16 16 C 1.36869 * 125.61890 * 359.97438 * 15 14 13 17 17 H 1.08003 * 119.99438 * 217.42211 * 16 15 14 18 18 C 1.39022 * 120.00677 * 37.42192 * 16 15 14 19 19 N 1.31346 * 119.99298 * 23.40548 * 18 16 15 20 20 Si 1.86796 * 120.00482 * 203.39939 * 18 16 15 21 21 H 1.48499 * 109.47030 * 184.97352 * 20 18 16 22 22 H 1.48495 * 109.47233 * 304.97401 * 20 18 16 23 23 H 1.48505 * 109.46970 * 64.97311 * 20 18 16 24 24 C 1.50706 * 109.46973 * 239.99801 * 2 1 3 25 25 N 1.31069 * 126.66079 * 284.63061 * 24 2 1 26 26 N 1.28844 * 107.99250 * 179.89270 * 25 24 2 27 27 N 1.28739 * 109.39086 * 0.37818 * 26 25 24 28 28 N 1.29014 * 108.81392 * 359.76082 * 27 26 25 29 29 C 1.46504 * 126.43958 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.47364 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46429 * 300.00029 * 1 2 3 32 32 H 1.08998 * 109.47076 * 59.99897 * 1 2 3 33 33 H 1.08005 * 126.12512 * 0.03469 * 8 7 5 34 34 H 1.08007 * 120.07975 * 359.96847 * 10 9 8 35 35 H 1.07998 * 119.69725 * 179.97438 * 11 10 9 36 36 H 1.07995 * 119.68711 * 180.02562 * 12 11 10 37 37 H 1.08005 * 120.08986 * 179.97438 * 13 12 11 38 38 H 0.97001 * 120.00677 * 5.62067 * 19 18 16 39 39 H 1.08997 * 109.47688 * 270.03228 * 29 28 27 40 40 H 1.08996 * 109.46752 * 30.03342 * 29 28 27 41 41 H 1.09005 * 109.46665 * 150.02676 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.1718 0.0585 2.3000 6 8 1.8265 1.2243 2.3074 7 6 2.7601 -0.5400 3.5033 8 6 2.8885 0.0773 4.7108 9 6 3.5087 -0.8357 5.5987 10 6 3.8914 -0.7590 6.9437 11 6 4.4852 -1.8327 7.5433 12 6 4.7132 -3.0032 6.8318 13 6 4.3451 -3.1029 5.5071 14 6 3.7398 -2.0223 4.8742 15 7 3.2705 -1.8217 3.5940 16 6 3.3081 -2.7385 2.5784 17 1 3.5078 -2.4161 1.5671 18 6 3.0894 -4.0845 2.8485 19 7 2.4153 -4.4384 3.9188 20 14 3.7539 -5.3899 1.6893 21 1 3.2868 -6.7284 2.1312 22 1 3.2649 -5.1245 0.3125 23 1 5.2385 -5.3543 1.7027 24 6 2.0323 -0.7105 -1.2305 25 7 2.0428 -2.0047 -1.4374 26 7 2.5458 -2.2171 -2.6045 27 7 2.8637 -1.0923 -3.1440 28 7 2.5626 -0.1395 -2.3280 29 6 2.7612 1.2944 -2.5532 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.5772 1.0841 4.9475 34 1 3.7182 0.1474 7.5050 35 1 4.7798 -1.7711 8.5805 36 1 5.1835 -3.8434 7.3208 37 1 4.5271 -4.0173 4.9619 38 1 2.0006 -3.7618 4.4766 39 1 3.7465 1.5863 -2.1899 40 1 2.6892 1.5081 -3.6196 41 1 1.9954 1.8558 -2.0177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787698585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:19 Heat of formation + Delta-G solvation = 99.397791 kcal Electronic energy + Delta-G solvation = -29802.953280 eV Core-core repulsion = 25686.810803 eV Total energy + Delta-G solvation = -4116.142476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.23795 -40.81140 -39.72801 -36.56956 -36.13433 -35.78673 -33.87809 -33.53243 -30.80443 -30.65427 -29.20178 -28.61015 -28.28294 -25.22324 -24.73075 -24.03522 -23.19016 -21.58485 -21.10233 -20.47614 -19.58821 -18.48120 -17.68192 -17.51256 -17.25596 -16.56042 -15.74683 -15.69925 -15.26685 -14.82380 -14.28893 -14.17975 -14.01034 -13.89405 -13.52814 -13.35035 -13.14333 -13.09818 -12.80094 -12.70989 -12.29141 -12.22163 -12.15982 -11.85392 -11.49123 -11.12775 -11.04041 -10.96158 -10.95868 -10.76798 -10.57458 -10.38988 -10.31978 -10.31715 -10.10335 -9.94118 -9.15775 -8.86155 -7.58034 -7.16252 -6.87200 -4.52642 1.03736 1.43514 1.72720 2.21320 2.56417 2.67581 2.91264 3.18936 3.24216 3.40761 3.70165 3.88564 3.91360 4.02960 4.29856 4.44332 4.54790 4.65801 4.71812 4.84857 4.85612 4.95731 5.18149 5.28931 5.57494 5.58878 5.63718 5.69195 5.80689 5.92464 5.96571 6.03643 6.21374 6.33155 6.42839 6.59259 6.70219 6.83953 6.92134 7.25447 7.36525 7.44322 7.67339 7.69147 7.77633 8.07797 8.23520 8.57839 8.68608 8.98687 10.05569 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.004429 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.415333 B = 6320.389111 C = 7950.440419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.173 3.827 3 H 0.103 0.897 4 O -0.310 6.310 5 C 0.548 3.452 6 O -0.525 6.525 7 C -0.035 4.035 8 C -0.162 4.162 9 C -0.125 4.125 10 C -0.084 4.084 11 C -0.154 4.154 12 C -0.141 4.141 13 C -0.071 4.071 14 C 0.049 3.951 15 N -0.235 5.235 16 C -0.407 4.407 17 H 0.115 0.885 18 C 0.032 3.968 19 N -0.812 5.812 20 Si 1.067 2.933 21 H -0.271 1.271 22 H -0.263 1.263 23 H -0.276 1.276 24 C 0.183 3.817 25 N -0.259 5.259 26 N -0.074 5.074 27 N -0.095 5.095 28 N -0.305 5.305 29 C 0.074 3.926 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.290 0.710 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 9.697 -6.721 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.114 3.886 3 H 0.121 0.879 4 O -0.225 6.225 5 C 0.397 3.603 6 O -0.416 6.416 7 C -0.148 4.148 8 C -0.190 4.190 9 C -0.129 4.129 10 C -0.103 4.103 11 C -0.173 4.173 12 C -0.162 4.162 13 C -0.090 4.090 14 C -0.067 4.067 15 N 0.104 4.896 16 C -0.535 4.535 17 H 0.132 0.868 18 C -0.185 4.185 19 N -0.437 5.437 20 Si 0.889 3.111 21 H -0.196 1.196 22 H -0.188 1.188 23 H -0.202 1.202 24 C -0.096 4.096 25 N -0.108 5.108 26 N -0.068 5.068 27 N -0.080 5.080 28 N -0.108 5.108 29 C -0.067 4.067 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.153 0.847 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.190 6.998 -8.029 10.652 hybrid contribution -0.350 2.720 0.517 2.791 sum -0.540 9.718 -7.512 12.294 Atomic orbital electron populations 1.22202 0.91427 1.04882 1.03680 1.20519 0.95402 0.94116 0.78582 0.87898 1.87083 1.77255 1.40324 1.17835 1.20115 0.74665 0.83587 0.81957 1.90783 1.49959 1.17052 1.83797 1.18926 1.12507 0.90448 0.92881 1.20255 1.08790 0.99597 0.90347 1.17874 1.06610 0.94162 0.94298 1.20093 0.99438 0.97967 0.92771 1.20346 1.03724 0.94199 0.98990 1.20600 1.04013 0.97803 0.93780 1.20289 0.97859 0.96650 0.94210 1.18315 1.05251 0.96719 0.86366 1.40353 1.33287 1.08360 1.07646 1.20988 1.52992 0.89311 0.90209 0.86759 1.26865 0.94044 0.98081 0.99508 1.70638 1.20861 1.39549 1.12675 0.83532 0.76855 0.74964 0.75753 1.19584 1.18769 1.20204 1.25619 1.00696 0.90578 0.92689 1.75215 1.15939 1.11008 1.08663 1.78705 1.11470 1.15076 1.01533 1.78861 1.18662 0.92420 1.18078 1.48416 1.40015 1.10457 1.11927 1.22470 1.05339 0.72700 1.06204 0.89969 0.89738 0.90901 0.84727 0.87449 0.87532 0.87162 0.86109 0.89804 0.88151 0.87133 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.50 37.16 0.35 -1.70 16 2 C 0.17 2.56 2.79 -27.88 -0.08 2.48 16 3 H 0.10 1.26 6.38 -51.93 -0.33 0.93 16 4 O -0.31 -6.18 7.63 -40.96 -0.31 -6.49 16 5 C 0.55 11.53 7.84 34.15 0.27 11.80 16 6 O -0.53 -10.58 16.13 -19.33 -0.31 -10.89 16 7 C -0.03 -0.81 6.76 -82.27 -0.56 -1.36 16 8 C -0.16 -3.58 10.55 -39.01 -0.41 -3.99 16 9 C -0.13 -2.81 6.16 -106.89 -0.66 -3.47 16 10 C -0.08 -1.62 10.06 -39.51 -0.40 -2.02 16 11 C -0.15 -2.81 9.97 -39.96 -0.40 -3.21 16 12 C -0.14 -2.78 10.02 -39.49 -0.40 -3.18 16 13 C -0.07 -1.62 8.51 -39.41 -0.34 -1.95 16 14 C 0.05 1.19 5.51 -83.83 -0.46 0.72 16 15 N -0.24 -5.91 2.62 -56.10 -0.15 -6.06 16 16 C -0.41 -10.39 8.71 -15.01 -0.13 -10.52 16 17 H 0.11 2.96 6.83 -52.48 -0.36 2.60 16 18 C 0.03 0.80 4.20 -17.47 -0.07 0.72 16 19 N -0.81 -21.34 11.82 55.50 0.66 -20.69 16 20 Si 1.07 22.62 29.98 -169.99 -5.10 17.52 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 24 C 0.18 2.82 7.03 -155.43 -1.09 1.73 16 25 N -0.26 -4.93 12.36 32.70 0.40 -4.53 16 26 N -0.07 -1.36 13.43 60.35 0.81 -0.54 16 27 N -0.09 -1.44 13.29 60.35 0.80 -0.64 16 28 N -0.30 -3.81 3.75 -65.02 -0.24 -4.05 16 29 C 0.07 0.45 11.04 59.85 0.66 1.11 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.13 2.64 8.06 -52.48 -0.42 2.22 16 34 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.12 2.89 6.49 -52.48 -0.34 2.55 16 38 H 0.29 7.99 7.09 -40.82 -0.29 7.70 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.41 7.41 -51.93 -0.38 0.02 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -31.76 358.07 -6.05 -37.82 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.30 Total: 6.01 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -3.71 Total: -12.85 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 2.28 Total: -36.51 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.62 Total: -17.38 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.10 Total: 17.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.76 -6.05 -37.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787698585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.215 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds