Wall clock time and date at job start Sat Apr 11 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47364 * 2 1 4 4 O 1.45202 * 109.47144 * 120.00401 * 2 1 3 5 5 C 1.34871 * 116.99427 * 272.34049 * 4 2 1 6 6 O 1.21589 * 120.00220 * 5.00655 * 5 4 2 7 7 C 1.46712 * 119.99456 * 185.00382 * 5 4 2 8 8 C 1.36221 * 125.44819 * 184.64039 * 7 5 4 9 9 C 1.41653 * 107.74584 * 180.27961 * 8 7 5 10 10 C 1.40044 * 133.34316 * 179.76233 * 9 8 7 11 11 C 1.36564 * 119.83272 * 180.02562 * 10 9 8 12 12 C 1.38861 * 120.60577 * 359.95925 * 11 10 9 13 13 C 1.37846 * 120.63158 * 0.02562 * 12 11 10 14 14 C 1.39093 * 119.82043 * 0.02562 * 13 12 11 15 15 N 1.37821 * 133.15165 * 180.02562 * 14 13 12 16 16 C 1.36869 * 125.61890 * 359.97438 * 15 14 13 17 17 H 1.08003 * 119.99438 * 217.42211 * 16 15 14 18 18 C 1.39022 * 120.00677 * 37.42192 * 16 15 14 19 19 N 1.31346 * 119.99298 * 23.40548 * 18 16 15 20 20 Si 1.86796 * 120.00482 * 203.39939 * 18 16 15 21 21 H 1.48499 * 109.47030 * 184.97352 * 20 18 16 22 22 H 1.48495 * 109.47233 * 304.97401 * 20 18 16 23 23 H 1.48505 * 109.46970 * 64.97311 * 20 18 16 24 24 C 1.50706 * 109.46973 * 239.99801 * 2 1 3 25 25 N 1.31069 * 126.66079 * 284.63061 * 24 2 1 26 26 N 1.28844 * 107.99250 * 179.89270 * 25 24 2 27 27 N 1.28739 * 109.39086 * 0.37818 * 26 25 24 28 28 N 1.29014 * 108.81392 * 359.76082 * 27 26 25 29 29 C 1.46504 * 126.43958 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.47364 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46429 * 300.00029 * 1 2 3 32 32 H 1.08998 * 109.47076 * 59.99897 * 1 2 3 33 33 H 1.08005 * 126.12512 * 0.03469 * 8 7 5 34 34 H 1.08007 * 120.07975 * 359.96847 * 10 9 8 35 35 H 1.07998 * 119.69725 * 179.97438 * 11 10 9 36 36 H 1.07995 * 119.68711 * 180.02562 * 12 11 10 37 37 H 1.08005 * 120.08986 * 179.97438 * 13 12 11 38 38 H 0.97001 * 120.00677 * 5.62067 * 19 18 16 39 39 H 1.08997 * 109.47688 * 270.03228 * 29 28 27 40 40 H 1.08996 * 109.46752 * 30.03342 * 29 28 27 41 41 H 1.09005 * 109.46665 * 150.02676 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.1718 0.0585 2.3000 6 8 1.8265 1.2243 2.3074 7 6 2.7601 -0.5400 3.5033 8 6 2.8885 0.0773 4.7108 9 6 3.5087 -0.8357 5.5987 10 6 3.8914 -0.7590 6.9437 11 6 4.4852 -1.8327 7.5433 12 6 4.7132 -3.0032 6.8318 13 6 4.3451 -3.1029 5.5071 14 6 3.7398 -2.0223 4.8742 15 7 3.2705 -1.8217 3.5940 16 6 3.3081 -2.7385 2.5784 17 1 3.5078 -2.4161 1.5671 18 6 3.0894 -4.0845 2.8485 19 7 2.4153 -4.4384 3.9188 20 14 3.7539 -5.3899 1.6893 21 1 3.2868 -6.7284 2.1312 22 1 3.2649 -5.1245 0.3125 23 1 5.2385 -5.3543 1.7027 24 6 2.0323 -0.7105 -1.2305 25 7 2.0428 -2.0047 -1.4374 26 7 2.5458 -2.2171 -2.6045 27 7 2.8637 -1.0923 -3.1440 28 7 2.5626 -0.1395 -2.3280 29 6 2.7612 1.2944 -2.5532 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.5772 1.0841 4.9475 34 1 3.7182 0.1474 7.5050 35 1 4.7798 -1.7711 8.5805 36 1 5.1835 -3.8434 7.3208 37 1 4.5271 -4.0173 4.9619 38 1 2.0006 -3.7618 4.4766 39 1 3.7465 1.5863 -2.1899 40 1 2.6892 1.5081 -3.6196 41 1 1.9954 1.8558 -2.0177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787698585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:17 Heat of formation + Delta-G solvation = 81.170103 kcal Electronic energy + Delta-G solvation = -29803.743691 eV Core-core repulsion = 25686.810803 eV Total energy + Delta-G solvation = -4116.932888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -45.42036 -42.48492 -41.28089 -38.05005 -37.75072 -36.84901 -35.66294 -34.80419 -32.39531 -31.95134 -30.82979 -29.94092 -29.40012 -26.56854 -26.45126 -25.45754 -24.37609 -22.93496 -22.71575 -21.99467 -21.26237 -20.15781 -19.01046 -18.76777 -18.39610 -17.96773 -17.44812 -17.25526 -16.72726 -16.26439 -15.96020 -15.62495 -15.25475 -14.98804 -14.81298 -14.71555 -14.64181 -14.41085 -14.29379 -13.89806 -13.79096 -13.58134 -13.32674 -13.21291 -12.90035 -12.65744 -12.49775 -12.29768 -12.21806 -12.15678 -12.13717 -12.01121 -11.97619 -11.88915 -11.58251 -11.30553 -10.94670 -10.60613 -9.39744 -8.91963 -8.59441 -6.44370 -0.22043 -0.09366 0.70516 0.94085 0.96814 1.04450 1.43810 1.50986 1.61419 1.71033 2.16211 2.18979 2.54360 2.59932 2.85040 3.08339 3.19049 3.46736 3.64333 3.77922 4.00807 4.08378 4.11374 4.14856 4.33641 4.38735 4.44797 4.46094 4.55209 4.61019 4.62167 4.68174 4.81997 4.91747 5.01957 5.04302 5.11749 5.18010 5.30099 5.46740 5.74150 5.76525 5.83650 6.01073 6.05896 6.41656 6.58607 6.89597 7.18808 7.35753 8.12202 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.004429 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.415333 B = 6320.389111 C = 7950.440419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.169 3.831 3 H 0.134 0.866 4 O -0.333 6.333 5 C 0.553 3.447 6 O -0.518 6.518 7 C -0.058 4.058 8 C -0.153 4.153 9 C -0.146 4.146 10 C -0.079 4.079 11 C -0.150 4.150 12 C -0.121 4.121 13 C -0.113 4.113 14 C 0.034 3.966 15 N -0.265 5.265 16 C -0.425 4.425 17 H 0.098 0.902 18 C 0.004 3.996 19 N -0.836 5.836 20 Si 1.106 2.894 21 H -0.266 1.266 22 H -0.269 1.269 23 H -0.264 1.264 24 C 0.179 3.821 25 N -0.306 5.306 26 N -0.110 5.110 27 N -0.089 5.089 28 N -0.283 5.283 29 C 0.053 3.947 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.161 0.839 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.271 0.729 39 H 0.116 0.884 40 H 0.137 0.863 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 12.453 -5.610 13.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.110 3.890 3 H 0.152 0.848 4 O -0.248 6.248 5 C 0.401 3.599 6 O -0.409 6.409 7 C -0.170 4.170 8 C -0.180 4.180 9 C -0.150 4.150 10 C -0.097 4.097 11 C -0.169 4.169 12 C -0.141 4.141 13 C -0.133 4.133 14 C -0.081 4.081 15 N 0.072 4.928 16 C -0.552 4.552 17 H 0.116 0.884 18 C -0.207 4.207 19 N -0.463 5.463 20 Si 0.924 3.076 21 H -0.190 1.190 22 H -0.194 1.194 23 H -0.189 1.189 24 C -0.100 4.100 25 N -0.156 5.156 26 N -0.104 5.104 27 N -0.075 5.075 28 N -0.088 5.088 29 C -0.085 4.085 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.131 0.869 33 H 0.178 0.822 34 H 0.163 0.837 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.321 9.779 -6.943 11.998 hybrid contribution -0.458 2.168 0.269 2.232 sum -0.138 11.947 -6.674 13.685 Atomic orbital electron populations 1.22208 0.89760 1.04105 1.05563 1.20997 0.96709 0.94841 0.76408 0.84808 1.87036 1.77345 1.41463 1.18947 1.19820 0.74539 0.83537 0.82052 1.90756 1.49662 1.16491 1.83966 1.19550 1.12640 0.90188 0.94609 1.20659 1.07223 1.00379 0.89781 1.18324 1.07306 0.93551 0.95859 1.20572 0.97931 0.99791 0.91440 1.20844 1.02291 0.92823 1.00899 1.21082 1.01328 0.99343 0.92377 1.20339 1.00906 0.96100 0.95930 1.18828 1.04964 0.97887 0.86432 1.40428 1.35429 1.08912 1.08034 1.20786 1.54588 0.89847 0.89999 0.88421 1.27793 0.93474 0.99532 0.99942 1.70734 1.23188 1.38385 1.13994 0.83056 0.77106 0.73494 0.73944 1.19039 1.19436 1.18876 1.25604 1.00922 0.89939 0.93498 1.75106 1.17460 1.13535 1.09452 1.78665 1.13268 1.16560 1.01895 1.78732 1.18021 0.92495 1.18293 1.48813 1.37606 1.12085 1.10294 1.23188 1.07356 0.69113 1.08812 0.92120 0.89853 0.86857 0.82187 0.83702 0.82924 0.84238 0.88314 0.91867 0.86549 0.84428 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 9.50 71.98 0.68 -3.12 16 2 C 0.17 4.84 2.79 29.85 0.08 4.92 16 3 H 0.13 2.94 6.38 -2.39 -0.02 2.92 16 4 O -0.33 -13.57 7.63 -57.85 -0.44 -14.01 16 5 C 0.55 23.33 7.84 70.04 0.55 23.88 16 6 O -0.52 -20.12 16.13 19.54 0.32 -19.80 16 7 C -0.06 -2.74 6.76 39.88 0.27 -2.47 16 8 C -0.15 -6.60 10.55 22.64 0.24 -6.36 16 9 C -0.15 -6.40 6.16 -21.34 -0.13 -6.53 16 10 C -0.08 -2.78 10.06 22.32 0.22 -2.55 16 11 C -0.15 -4.88 9.97 22.03 0.22 -4.66 16 12 C -0.12 -4.52 10.02 22.33 0.22 -4.29 16 13 C -0.11 -5.26 8.51 22.38 0.19 -5.07 16 14 C 0.03 1.68 5.51 39.07 0.22 1.89 16 15 N -0.26 -13.86 2.62 -331.41 -0.87 -14.72 16 16 C -0.42 -23.00 8.71 84.10 0.73 -22.27 16 17 H 0.10 5.44 6.83 -2.91 -0.02 5.42 16 18 C 0.00 0.19 4.20 84.95 0.36 0.54 16 19 N -0.84 -46.46 11.82 21.67 0.26 -46.21 16 20 Si 1.11 48.36 29.98 68.60 2.06 50.42 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 C 0.18 5.48 7.03 138.14 0.97 6.46 16 25 N -0.31 -12.07 12.36 -50.45 -0.62 -12.69 16 26 N -0.11 -4.17 13.43 37.01 0.50 -3.68 16 27 N -0.09 -2.68 13.29 37.02 0.49 -2.19 16 28 N -0.28 -6.67 3.75 -359.63 -1.35 -8.02 16 29 C 0.05 0.47 11.04 127.77 1.41 1.89 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.16 5.90 8.06 -2.91 -0.02 5.88 16 34 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 35 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 36 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 37 H 0.10 4.97 6.49 -2.91 -0.02 4.95 16 38 H 0.27 15.85 7.09 -92.71 -0.66 15.19 16 39 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.14 0.44 7.41 -2.38 -0.02 0.43 16 Total: -1.00 -74.93 358.07 7.77 -67.16 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 1.20 Total: 21.49 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 6.24 Total: -17.76 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -1.59 Total: -87.51 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.13 Total: -33.81 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.06 Total: 50.42 kcal Total: -74.93 7.77 -67.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787698585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.330 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds