Wall clock time and date at job start Sat Apr 11 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00022 * 2 1 4 4 H 1.48493 * 109.47176 * 270.00207 * 3 2 1 5 5 H 1.48492 * 109.46721 * 30.00509 * 3 2 1 6 6 H 1.48495 * 109.46695 * 150.00208 * 3 2 1 7 7 C 1.38650 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99876 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00455 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99980 * 185.06005 * 9 7 2 11 11 C 1.38877 * 120.07198 * 354.46248 * 10 9 7 12 12 C 1.38096 * 119.93329 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92625 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47121 * 90.00684 * 14 13 12 16 16 C 1.34771 * 119.99776 * 180.27695 * 15 14 13 17 17 O 1.21282 * 120.00452 * 359.71500 * 16 15 14 18 18 C 1.50710 * 119.99698 * 179.72434 * 16 15 14 19 19 H 1.08995 * 109.47159 * 54.99796 * 18 16 15 20 20 O 1.42896 * 109.46773 * 174.99411 * 18 16 15 21 21 C 1.52994 * 109.46807 * 294.99410 * 18 16 15 22 22 C 1.50703 * 109.47109 * 175.00142 * 21 18 16 23 23 C 1.38230 * 119.99975 * 269.72760 * 22 21 18 24 24 C 1.38233 * 120.00369 * 179.76272 * 23 22 21 25 25 C 1.38240 * 119.99681 * 0.50998 * 24 23 22 26 26 C 1.38242 * 119.99613 * 359.74222 * 25 24 23 27 27 C 1.38230 * 120.00046 * 0.02562 * 26 25 24 28 28 C 1.38298 * 120.14326 * 0.25695 * 13 12 11 29 29 C 1.38111 * 120.06447 * 359.44743 * 28 13 12 30 30 H 0.97000 * 120.00019 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.03543 * 0.02562 * 11 10 9 32 32 H 1.08004 * 119.96668 * 180.02562 * 12 11 10 33 33 H 1.09000 * 109.47468 * 330.00338 * 14 13 12 34 34 H 1.09001 * 109.47115 * 210.00399 * 14 13 12 35 35 H 0.96998 * 119.99687 * 359.97438 * 15 14 13 36 36 H 0.96697 * 114.00106 * 60.00302 * 20 18 16 37 37 H 1.08998 * 109.47286 * 295.00388 * 21 18 16 38 38 H 1.08999 * 109.47479 * 55.00024 * 21 18 16 39 39 H 1.08002 * 120.00093 * 359.97438 * 23 22 21 40 40 H 1.08000 * 120.00417 * 180.23164 * 24 23 22 41 41 H 1.08001 * 120.00116 * 179.72391 * 25 24 23 42 42 H 1.07996 * 119.99463 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.99658 * 179.97438 * 27 26 25 44 44 H 1.07994 * 119.96878 * 179.70329 * 28 13 12 45 45 H 1.07993 * 120.03462 * 180.27464 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4471 2.6525 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0087 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4571 -3.4396 0.0921 12 6 4.2023 -4.5972 0.1998 13 6 3.5686 -5.8206 0.3204 14 6 4.3849 -7.0819 0.4370 15 7 4.6564 -7.3590 1.8498 16 6 5.3802 -8.4415 2.1971 17 8 5.8023 -9.1892 1.3406 18 6 5.6648 -8.7231 3.6501 19 1 4.7263 -8.7637 4.2029 20 8 6.3420 -9.9757 3.7687 21 6 6.5459 -7.6107 4.2220 22 6 6.7293 -7.8261 5.7022 23 6 5.8421 -7.2597 6.5982 24 6 6.0075 -7.4613 7.9557 25 6 7.0662 -8.2206 8.4178 26 6 7.9565 -8.7827 7.5219 27 6 7.7883 -8.5850 6.1642 28 6 2.1873 -5.8893 0.3282 29 6 1.4365 -4.7346 0.2271 30 1 -0.4850 0.8400 0.0004 31 1 3.9526 -2.4846 -0.0024 32 1 5.2812 -4.5472 0.1898 33 1 5.3272 -6.9556 -0.0961 34 1 3.8310 -7.9146 0.0035 35 1 4.3190 -6.7609 2.5348 36 1 7.1872 -10.0118 3.3002 37 1 7.5179 -7.6276 3.7291 38 1 6.0689 -6.6455 4.0516 39 1 5.0177 -6.6625 6.2375 40 1 5.3121 -7.0219 8.6556 41 1 7.1980 -8.3744 9.4786 42 1 8.7838 -9.3755 7.8830 43 1 8.4841 -9.0238 5.4644 44 1 1.6954 -6.8465 0.4177 45 1 0.3579 -4.7884 0.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793369498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:24 Heat of formation + Delta-G solvation = -72.735762 kcal Electronic energy + Delta-G solvation = -27648.060401 eV Core-core repulsion = 23595.701246 eV Total energy + Delta-G solvation = -4052.359155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.39602 -39.41604 -39.07478 -37.17141 -36.55371 -34.62019 -33.17366 -32.41023 -31.14791 -30.47968 -30.29079 -28.86747 -26.10737 -25.23190 -24.07664 -22.83964 -22.11350 -21.47266 -20.73172 -20.67007 -18.30543 -18.09646 -17.11837 -16.99966 -16.74769 -16.09074 -15.52404 -15.38758 -15.18690 -14.81135 -14.69123 -14.53000 -14.22431 -13.97030 -13.76595 -13.65688 -13.47632 -13.25908 -12.89554 -12.84626 -12.79201 -12.33685 -12.20169 -11.97935 -11.72724 -11.48052 -11.41156 -11.26144 -11.09478 -11.00075 -10.86182 -10.74630 -10.52867 -9.77955 -9.47987 -9.17018 -9.09824 -8.97086 -8.91277 -8.34611 -7.38272 -6.57251 -4.16291 1.05806 1.15333 1.99753 2.07191 2.44282 3.04051 3.06267 3.11174 3.20443 3.52759 3.86591 3.97689 4.33611 4.45233 4.51296 4.59470 4.74432 4.78673 4.79738 4.87533 4.97362 5.10646 5.17340 5.20254 5.23873 5.34877 5.37758 5.46500 5.59767 5.73610 5.74931 5.78246 5.84051 6.06683 6.19513 6.25700 6.28921 6.32468 6.37133 6.54179 6.73685 6.74501 6.89932 7.08043 7.19465 7.21364 7.30000 7.47375 7.65906 7.87186 8.07542 8.87955 9.55573 10.60111 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.002164 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.834652 B =12934.331086 C =14567.265909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.051 4.051 13 C -0.217 4.217 14 C 0.178 3.822 15 N -0.717 5.717 16 C 0.480 3.520 17 O -0.540 6.540 18 C 0.100 3.900 19 H 0.124 0.876 20 O -0.533 6.533 21 C -0.110 4.110 22 C -0.077 4.077 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.103 4.103 28 C -0.054 4.054 29 C -0.195 4.195 30 H 0.272 0.728 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.402 0.598 36 H 0.380 0.620 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.465 -13.842 12.480 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.069 4.069 13 C -0.218 4.218 14 C 0.056 3.944 15 N -0.369 5.369 16 C 0.265 3.735 17 O -0.417 6.417 18 C 0.037 3.963 19 H 0.142 0.858 20 O -0.337 6.337 21 C -0.148 4.148 22 C -0.077 4.077 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.139 4.139 27 C -0.121 4.121 28 C -0.073 4.073 29 C -0.214 4.214 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.237 0.763 36 H 0.229 0.771 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.803 -14.308 12.180 22.737 hybrid contribution 0.708 1.399 -0.044 1.569 sum 13.511 -12.909 12.136 22.282 Atomic orbital electron populations 1.70034 1.06017 1.27932 1.45251 1.25327 0.95871 0.98963 0.96303 0.85689 0.78929 0.79883 0.78830 1.19773 1.20154 1.19122 1.21355 0.91864 0.80699 1.53072 0.88907 1.83980 1.34521 1.11576 1.77387 1.19444 0.90323 0.88058 0.91605 1.21157 0.93774 0.98958 1.11731 1.20632 0.98337 0.91620 0.96350 1.19184 0.93558 0.93526 1.15544 1.20012 0.98555 0.95009 0.80866 1.46422 1.54134 1.26602 1.09772 1.21573 0.78691 0.81128 0.92067 1.90713 1.51963 1.47416 1.51629 1.21843 0.97535 0.85213 0.91731 0.85850 1.86613 1.38879 1.32652 1.75584 1.21284 1.01544 0.99219 0.92733 1.19610 0.95713 0.98015 0.94382 1.21105 0.99127 0.99941 0.93244 1.21152 0.98097 0.98878 0.95597 1.21167 0.95292 0.98117 0.99630 1.21139 0.99425 0.99952 0.93366 1.21001 0.97606 0.97933 0.95567 1.20537 0.92759 0.96846 0.97154 1.20224 0.99707 0.90235 1.11270 0.91829 0.85405 0.87426 0.91514 0.91456 0.76291 0.77106 0.89862 0.89097 0.85815 0.86013 0.86256 0.86178 0.86193 0.86950 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.29 13.67 55.48 0.76 -23.53 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 7 C -0.39 -10.50 9.49 30.88 0.29 -10.21 16 8 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 9 O -0.17 -4.68 9.76 0.04 0.00 -4.68 16 10 C 0.16 3.62 6.65 -39.11 -0.26 3.36 16 11 C -0.24 -4.73 9.17 -39.40 -0.36 -5.09 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.22 -3.28 5.25 -104.58 -0.55 -3.83 16 14 C 0.18 2.32 5.80 -5.19 -0.03 2.29 16 15 N -0.72 -7.98 5.45 -61.46 -0.33 -8.31 16 16 C 0.48 5.65 7.17 -10.98 -0.08 5.57 16 17 O -0.54 -8.40 16.32 -14.31 -0.23 -8.64 16 18 C 0.10 0.91 3.37 -27.88 -0.09 0.82 16 19 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 20 O -0.53 -5.44 12.49 -55.09 -0.69 -6.13 16 21 C -0.11 -0.83 5.00 -27.88 -0.14 -0.97 16 22 C -0.08 -0.65 4.97 -104.63 -0.52 -1.17 16 23 C -0.12 -0.97 9.70 -39.59 -0.38 -1.36 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 26 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 27 C -0.10 -0.85 9.40 -39.59 -0.37 -1.22 16 28 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 29 C -0.20 -3.81 9.99 -39.39 -0.39 -4.20 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.13 2.58 5.64 -52.48 -0.30 2.28 16 32 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.40 3.84 8.17 -40.82 -0.33 3.50 16 36 H 0.38 3.01 8.79 45.56 0.40 3.42 16 37 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.09 0.62 7.71 -51.93 -0.40 0.22 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 390.20 15.07 5.88 5.88 Total: -1.00 -32.35 390.20 -9.69 -42.03 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -5.10 Total: 10.30 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -4.95 Total: -21.57 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.42 Total: -31.85 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.92 Total: -19.45 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.35 -9.69 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793369498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.701 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds