Wall clock time and date at job start Sat Apr 11 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00022 * 2 1 4 4 H 1.48493 * 109.47176 * 270.00207 * 3 2 1 5 5 H 1.48492 * 109.46721 * 30.00509 * 3 2 1 6 6 H 1.48495 * 109.46695 * 150.00208 * 3 2 1 7 7 C 1.38650 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99876 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00455 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99980 * 185.06005 * 9 7 2 11 11 C 1.38877 * 120.07198 * 354.46248 * 10 9 7 12 12 C 1.38096 * 119.93329 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92625 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47121 * 90.00684 * 14 13 12 16 16 C 1.34771 * 119.99776 * 180.27695 * 15 14 13 17 17 O 1.21282 * 120.00452 * 359.71500 * 16 15 14 18 18 C 1.50710 * 119.99698 * 179.72434 * 16 15 14 19 19 H 1.08995 * 109.47159 * 54.99796 * 18 16 15 20 20 O 1.42896 * 109.46773 * 174.99411 * 18 16 15 21 21 C 1.52994 * 109.46807 * 294.99410 * 18 16 15 22 22 C 1.50703 * 109.47109 * 175.00142 * 21 18 16 23 23 C 1.38230 * 119.99975 * 269.72760 * 22 21 18 24 24 C 1.38233 * 120.00369 * 179.76272 * 23 22 21 25 25 C 1.38240 * 119.99681 * 0.50998 * 24 23 22 26 26 C 1.38242 * 119.99613 * 359.74222 * 25 24 23 27 27 C 1.38230 * 120.00046 * 0.02562 * 26 25 24 28 28 C 1.38298 * 120.14326 * 0.25695 * 13 12 11 29 29 C 1.38111 * 120.06447 * 359.44743 * 28 13 12 30 30 H 0.97000 * 120.00019 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.03543 * 0.02562 * 11 10 9 32 32 H 1.08004 * 119.96668 * 180.02562 * 12 11 10 33 33 H 1.09000 * 109.47468 * 330.00338 * 14 13 12 34 34 H 1.09001 * 109.47115 * 210.00399 * 14 13 12 35 35 H 0.96998 * 119.99687 * 359.97438 * 15 14 13 36 36 H 0.96697 * 114.00106 * 60.00302 * 20 18 16 37 37 H 1.08998 * 109.47286 * 295.00388 * 21 18 16 38 38 H 1.08999 * 109.47479 * 55.00024 * 21 18 16 39 39 H 1.08002 * 120.00093 * 359.97438 * 23 22 21 40 40 H 1.08000 * 120.00417 * 180.23164 * 24 23 22 41 41 H 1.08001 * 120.00116 * 179.72391 * 25 24 23 42 42 H 1.07996 * 119.99463 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.99658 * 179.97438 * 27 26 25 44 44 H 1.07994 * 119.96878 * 179.70329 * 28 13 12 45 45 H 1.07993 * 120.03462 * 180.27464 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4471 2.6525 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0087 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4571 -3.4396 0.0921 12 6 4.2023 -4.5972 0.1998 13 6 3.5686 -5.8206 0.3204 14 6 4.3849 -7.0819 0.4370 15 7 4.6564 -7.3590 1.8498 16 6 5.3802 -8.4415 2.1971 17 8 5.8023 -9.1892 1.3406 18 6 5.6648 -8.7231 3.6501 19 1 4.7263 -8.7637 4.2029 20 8 6.3420 -9.9757 3.7687 21 6 6.5459 -7.6107 4.2220 22 6 6.7293 -7.8261 5.7022 23 6 5.8421 -7.2597 6.5982 24 6 6.0075 -7.4613 7.9557 25 6 7.0662 -8.2206 8.4178 26 6 7.9565 -8.7827 7.5219 27 6 7.7883 -8.5850 6.1642 28 6 2.1873 -5.8893 0.3282 29 6 1.4365 -4.7346 0.2271 30 1 -0.4850 0.8400 0.0004 31 1 3.9526 -2.4846 -0.0024 32 1 5.2812 -4.5472 0.1898 33 1 5.3272 -6.9556 -0.0961 34 1 3.8310 -7.9146 0.0035 35 1 4.3190 -6.7609 2.5348 36 1 7.1872 -10.0118 3.3002 37 1 7.5179 -7.6276 3.7291 38 1 6.0689 -6.6455 4.0516 39 1 5.0177 -6.6625 6.2375 40 1 5.3121 -7.0219 8.6556 41 1 7.1980 -8.3744 9.4786 42 1 8.7838 -9.3755 7.8830 43 1 8.4841 -9.0238 5.4644 44 1 1.6954 -6.8465 0.4177 45 1 0.3579 -4.7884 0.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793369498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:22 Heat of formation + Delta-G solvation = -93.117875 kcal Electronic energy + Delta-G solvation = -27648.944236 eV Core-core repulsion = 23595.701246 eV Total energy + Delta-G solvation = -4053.242990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.31216 -40.75483 -39.96852 -38.58595 -37.50477 -35.75421 -34.30944 -33.80485 -31.86309 -31.71612 -31.61623 -29.75106 -27.66974 -26.53318 -25.05256 -23.64694 -23.40776 -22.19775 -22.07715 -21.57123 -19.88508 -19.22139 -18.74289 -17.71213 -17.57109 -16.88901 -16.57969 -16.36636 -16.26791 -15.95531 -15.91370 -15.69579 -15.52318 -15.25016 -15.14553 -14.73106 -14.39663 -14.23275 -14.18084 -13.89017 -13.65546 -13.52151 -13.30359 -13.03765 -12.97350 -12.73617 -12.56746 -12.37008 -12.23962 -12.11867 -11.99998 -11.86058 -11.77216 -11.19957 -10.85626 -10.65784 -10.11588 -9.81016 -9.75140 -9.54077 -9.00472 -8.48219 -6.16410 0.46374 0.54628 0.57207 0.57841 1.36278 1.44360 1.52308 1.53209 2.16760 2.20207 2.83793 2.92984 3.16929 3.30000 3.48623 3.67576 3.86935 3.90708 3.92883 4.02885 4.11743 4.17540 4.20832 4.22876 4.35768 4.44964 4.56814 4.59245 4.68800 4.74977 4.80519 4.82302 4.89065 5.04205 5.14355 5.19893 5.23071 5.26700 5.37615 5.52658 5.62931 5.69115 5.69410 5.73759 5.74650 6.01555 6.15994 6.18269 6.43239 6.66884 6.96707 7.15852 7.76046 8.74530 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.002164 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.834652 B =12934.331086 C =14567.265909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.122 3.878 11 C -0.243 4.243 12 C -0.044 4.044 13 C -0.182 4.182 14 C 0.182 3.818 15 N -0.708 5.708 16 C 0.486 3.514 17 O -0.577 6.577 18 C 0.110 3.890 19 H 0.132 0.868 20 O -0.546 6.546 21 C -0.101 4.101 22 C -0.087 4.087 23 C -0.130 4.130 24 C -0.132 4.132 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.116 4.116 28 C -0.044 4.044 29 C -0.205 4.205 30 H 0.273 0.727 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.413 0.587 36 H 0.389 0.611 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.146 0.854 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.970 -15.348 13.426 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.175 1.175 7 C -0.488 4.488 8 H 0.122 0.878 9 O -0.135 6.135 10 C 0.071 3.929 11 C -0.262 4.262 12 C -0.063 4.063 13 C -0.183 4.183 14 C 0.060 3.940 15 N -0.362 5.362 16 C 0.272 3.728 17 O -0.457 6.457 18 C 0.047 3.953 19 H 0.150 0.850 20 O -0.352 6.352 21 C -0.139 4.139 22 C -0.087 4.087 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.151 4.151 26 C -0.150 4.150 27 C -0.134 4.134 28 C -0.063 4.063 29 C -0.224 4.224 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.159 0.841 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.250 0.750 36 H 0.239 0.761 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.164 0.836 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.345 -15.862 13.145 25.688 hybrid contribution 0.082 1.444 -0.282 1.473 sum 15.427 -14.418 12.863 24.725 Atomic orbital electron populations 1.70179 1.08034 1.28847 1.48618 1.26580 0.96818 1.02769 0.95837 0.84598 0.77903 0.74633 0.79195 1.18982 1.19751 1.17452 1.21827 0.92571 0.81303 1.53141 0.87835 1.83951 1.36094 1.12690 1.80808 1.20005 0.91692 0.87921 0.93263 1.21249 0.92946 1.00141 1.11911 1.20943 0.99864 0.90610 0.94840 1.19475 0.93371 0.94138 1.11328 1.19910 0.98438 0.93538 0.82158 1.46224 1.53969 1.26791 1.09167 1.21983 0.77681 0.80312 0.92796 1.90706 1.53445 1.48652 1.52907 1.21832 0.98231 0.85410 0.89807 0.85007 1.86592 1.39573 1.33334 1.75734 1.21220 1.01588 0.98887 0.92202 1.19730 0.95947 0.98316 0.94748 1.21345 0.99588 1.00263 0.93551 1.21426 0.98573 0.99074 0.95960 1.21460 0.95163 0.97869 1.00655 1.21428 0.99983 1.00107 0.93439 1.21251 0.97940 0.98059 0.96109 1.20882 0.93168 0.96918 0.95318 1.20450 1.00059 0.90453 1.11481 0.91825 0.86177 0.84109 0.90864 0.91088 0.75045 0.76097 0.89299 0.88117 0.84790 0.84781 0.84663 0.84638 0.85160 0.83618 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.92 13.67 21.61 0.30 -54.63 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 3 Si 1.02 41.28 29.55 68.60 2.03 43.30 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 7 C -0.41 -22.99 9.49 67.92 0.64 -22.34 16 8 H 0.10 5.24 5.20 -2.91 -0.02 5.22 16 9 O -0.23 -13.19 9.76 -22.76 -0.22 -13.41 16 10 C 0.12 5.66 6.65 22.58 0.15 5.81 16 11 C -0.24 -9.60 9.17 22.39 0.21 -9.40 16 12 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 13 C -0.18 -4.85 5.25 -19.83 -0.10 -4.96 16 14 C 0.18 4.01 5.80 85.63 0.50 4.50 16 15 N -0.71 -13.03 5.45 -466.77 -2.54 -15.57 16 16 C 0.49 9.91 7.17 87.66 0.63 10.54 16 17 O -0.58 -16.46 16.32 15.95 0.26 -16.20 16 18 C 0.11 1.70 3.37 29.85 0.10 1.80 16 19 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 20 O -0.55 -9.95 12.49 -129.99 -1.62 -11.57 16 21 C -0.10 -1.25 5.00 29.85 0.15 -1.10 16 22 C -0.09 -1.29 4.97 -19.87 -0.10 -1.39 16 23 C -0.13 -1.93 9.70 22.27 0.22 -1.71 16 24 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 25 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 26 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 27 C -0.12 -1.69 9.40 22.27 0.21 -1.48 16 28 C -0.04 -1.31 9.69 22.25 0.22 -1.09 16 29 C -0.21 -7.99 9.99 22.39 0.22 -7.77 16 30 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.12 4.87 5.64 -2.91 -0.02 4.86 16 32 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 34 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 35 H 0.41 6.17 8.17 -92.71 -0.76 5.41 16 36 H 0.39 5.39 8.79 -74.06 -0.65 4.74 16 37 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 38 H 0.10 1.04 7.71 -2.39 -0.02 1.02 16 39 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.13 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.13 1.52 8.06 -2.91 -0.02 1.49 16 44 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 45 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -74.23 390.20 2.21 -72.02 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: -0.37 Total: 31.44 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 4.39 Total: -35.38 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -2.25 Total: -70.20 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.59 Total: -41.18 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -74.23 2.21 -72.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793369498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.099 kcal (2) G-P(sol) polarization free energy of solvation -74.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds