Wall clock time and date at job start Sat Apr 11 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 N 1.46496 * 109.47288 * 270.27879 * 9 8 7 11 11 S 1.65596 * 120.00162 * 164.99956 * 10 9 8 12 12 O 1.42098 * 104.27863 * 181.07005 * 11 10 9 13 13 O 1.42101 * 104.27744 * 308.92275 * 11 10 9 14 14 C 1.81403 * 104.45096 * 64.99734 * 11 10 9 15 15 C 1.52997 * 109.46708 * 179.97438 * 14 11 10 16 16 C 1.50705 * 109.46733 * 180.02562 * 15 14 11 17 17 H 1.08003 * 120.00008 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00047 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99901 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47243 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46796 * 120.00256 * 20 18 16 23 23 H 1.48506 * 109.47012 * 239.99830 * 20 18 16 24 24 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 25 25 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 26 26 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 27 27 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 28 28 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 31 31 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 32 32 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 33 33 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 34 34 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 35 35 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 36 36 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 37 37 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 38 38 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 39 39 H 0.97002 * 119.99568 * 344.99774 * 10 9 8 40 40 H 1.08994 * 109.47096 * 299.99641 * 14 11 10 41 41 H 1.08994 * 109.47070 * 60.00457 * 14 11 10 42 42 H 1.08996 * 109.47546 * 299.99871 * 15 14 11 43 43 H 1.09001 * 109.47364 * 60.00379 * 15 14 11 44 44 H 0.96998 * 119.99501 * 180.02562 * 19 18 16 45 45 H 1.08001 * 120.00274 * 179.72697 * 24 8 7 46 46 H 1.07997 * 120.00460 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4066 -2.1839 3.7828 9 6 3.9089 -2.8942 5.0133 10 7 2.7696 -3.3551 5.8105 11 16 2.9964 -4.4755 7.0086 12 8 1.6948 -4.6938 7.5353 13 8 3.7160 -5.5246 6.3757 14 6 4.0423 -3.6306 8.2264 15 6 4.3255 -4.5738 9.3972 16 6 5.1938 -3.8717 10.4092 17 1 5.5122 -2.8546 10.2344 18 6 5.5827 -4.5282 11.5577 19 7 5.1954 -5.7669 11.7702 20 14 6.6597 -3.6581 12.8116 21 1 6.9556 -2.2815 12.3397 22 1 5.9494 -3.5934 14.1141 23 1 7.9307 -4.4079 12.9777 24 6 3.1758 -0.8214 3.8172 25 6 2.7155 -0.1696 2.6883 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5211 33 1 2.1208 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5208 35 1 2.5357 -2.7986 0.5826 36 1 3.3471 -3.9610 2.5960 37 1 4.5149 -3.7504 4.7167 38 1 4.5143 -2.2090 5.6068 39 1 1.8822 -3.0039 5.6365 40 1 4.9825 -3.3396 7.7582 41 1 3.5283 -2.7419 8.5924 42 1 3.3851 -4.8645 9.8654 43 1 4.8393 -5.4629 9.0315 44 1 5.4687 -6.2286 12.5783 45 1 3.3555 -0.2659 4.7258 46 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798223778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:27 Heat of formation + Delta-G solvation = -103.359335 kcal Electronic energy + Delta-G solvation = -24165.343060 eV Core-core repulsion = 20610.306366 eV Total energy + Delta-G solvation = -3555.036694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -39.40245 -36.58815 -35.49133 -35.21674 -33.89211 -31.16531 -31.12470 -30.91655 -28.99897 -27.90296 -27.87189 -25.60952 -25.55691 -22.70602 -21.69198 -21.28830 -18.94046 -17.59517 -17.05747 -16.33307 -15.90867 -15.60948 -15.23153 -15.06857 -14.59541 -14.52700 -13.73867 -13.65949 -13.54898 -13.52955 -13.35620 -13.32842 -13.06475 -12.92808 -12.72208 -12.66435 -12.56200 -12.51038 -12.20041 -11.74923 -11.58592 -11.49920 -11.43309 -11.21034 -11.09714 -10.95852 -10.46237 -10.40944 -10.38749 -10.35862 -10.14820 -9.80843 -9.49087 -9.05299 -9.02239 -8.88732 -8.50958 -6.12855 -4.18271 0.71283 1.08674 1.28978 2.31310 2.41517 2.52667 3.11883 3.18083 3.24930 3.32184 3.35562 3.72165 4.24934 4.37545 4.54921 4.68115 4.77735 4.87339 5.20667 5.21381 5.22413 5.23958 5.26220 5.26614 5.28152 5.30385 5.31150 5.33177 5.52241 5.63950 5.68029 5.79477 5.91736 5.93852 5.95949 6.04402 6.07239 6.21687 6.32978 6.46515 6.49036 6.87882 7.09797 7.30376 7.36486 7.80385 8.17302 8.85373 9.46465 10.98196 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.001991 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.923015 B =14058.561833 C =14681.466747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.448 4.448 4 C -0.449 4.449 5 C -0.371 4.371 6 C -0.092 4.092 7 C -0.112 4.112 8 C -0.083 4.083 9 C 0.153 3.847 10 N -1.124 6.124 11 S 2.593 3.407 12 O -0.967 6.967 13 O -0.967 6.967 14 C -0.589 4.589 15 C 0.027 3.973 16 C -0.519 4.519 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.116 4.116 25 C -0.092 4.092 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.413 0.587 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.264 0.736 45 H 0.123 0.877 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 14.365 -26.481 30.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.251 2.749 3 C -0.556 4.556 4 C -0.556 4.556 5 C -0.413 4.413 6 C -0.110 4.110 7 C -0.131 4.131 8 C -0.085 4.085 9 C 0.027 3.973 10 N -0.881 5.881 11 S 2.691 3.309 12 O -0.957 6.957 13 O -0.957 6.957 14 C -0.723 4.723 15 C -0.012 4.012 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.134 4.134 25 C -0.110 4.110 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.246 0.754 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.141 0.859 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.356 13.209 -26.291 30.101 hybrid contribution 0.625 1.042 1.057 1.610 sum -5.731 14.251 -25.234 29.541 Atomic orbital electron populations 1.26125 1.20646 1.04561 1.04300 0.78163 0.66773 0.66046 0.63946 1.26128 1.06455 1.18653 1.04377 1.26130 1.06463 1.08079 1.14970 1.27351 1.04226 0.99561 1.10149 1.21052 0.97629 0.94586 0.97693 1.21247 0.99035 1.00013 0.92826 1.19891 0.99794 0.93960 0.94847 1.20215 0.88052 0.99010 0.89986 1.55862 1.16037 1.64420 1.51761 1.05544 0.75674 0.74742 0.74952 1.93554 1.37881 1.84451 1.79843 1.93536 1.75334 1.52916 1.73889 1.30443 1.13733 1.13300 1.14808 1.18972 0.98784 0.93317 0.90122 1.21044 1.31436 0.99736 1.03676 0.92001 1.25082 0.96295 0.94972 0.98240 1.69968 1.45030 1.10841 1.26969 0.86408 0.80129 0.79628 0.81071 1.19669 1.20812 1.20807 1.21210 0.99469 0.94012 0.98741 1.21036 0.97681 0.99482 0.92800 0.91161 0.91275 0.91158 0.91064 0.91182 0.91170 0.91160 0.91183 0.91058 0.86241 0.85894 0.89380 0.90836 0.75376 0.86321 0.86088 0.94815 0.94790 0.92589 0.85949 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -2.33 8.65 101.05 0.87 -1.45 16 2 Si 1.06 4.58 12.32 -169.99 -2.09 2.49 16 3 C -0.45 -2.07 8.53 101.05 0.86 -1.21 16 4 C -0.45 -2.11 8.53 101.05 0.86 -1.24 16 5 C -0.37 -2.81 4.59 -39.58 -0.18 -2.99 16 6 C -0.09 -0.79 9.29 -39.58 -0.37 -1.16 16 7 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 8 C -0.08 -0.89 5.28 -104.63 -0.55 -1.44 16 9 C 0.15 1.77 6.25 -5.20 -0.03 1.74 16 10 N -1.12 -14.74 5.88 -11.66 -0.07 -14.81 16 11 S 2.59 46.01 5.46 -107.50 -0.59 45.42 16 12 O -0.97 -20.15 18.08 -57.54 -1.04 -21.19 16 13 O -0.97 -19.91 17.50 -57.54 -1.01 -20.92 16 14 C -0.59 -11.11 6.01 37.16 0.22 -10.89 16 15 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 16 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 17 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 25 C -0.09 -0.76 9.29 -39.58 -0.37 -1.13 16 26 H 0.07 0.38 7.96 -51.93 -0.41 -0.03 16 27 H 0.07 0.31 7.96 -51.93 -0.41 -0.11 16 28 H 0.07 0.39 7.96 -51.93 -0.41 -0.02 16 29 H 0.07 0.35 7.96 -51.93 -0.41 -0.07 16 30 H 0.07 0.28 7.96 -51.93 -0.41 -0.13 16 31 H 0.07 0.32 7.69 -51.93 -0.40 -0.08 16 32 H 0.07 0.33 7.69 -51.93 -0.40 -0.07 16 33 H 0.07 0.29 7.96 -51.93 -0.41 -0.13 16 34 H 0.07 0.35 7.96 -51.93 -0.41 -0.06 16 35 H 0.12 0.78 7.43 -52.49 -0.39 0.39 16 36 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.09 1.04 7.64 -51.93 -0.40 0.65 16 38 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.41 4.82 8.61 -34.47 -0.30 4.52 16 40 H 0.12 1.98 8.14 -51.93 -0.42 1.55 16 41 H 0.12 2.06 8.14 -51.93 -0.42 1.63 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 46 H 0.12 0.73 7.43 -52.49 -0.39 0.34 16 LS Contribution 403.80 15.07 6.09 6.09 Total: -1.00 -36.15 403.80 -10.66 -46.81 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.66 Total: 1.10 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 0.00 Total: -35.41 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.67 Total: -40.58 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -2.05 Total: -42.12 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -7.12 Total: 18.68 kcal Atomic # 16 Polarization: 46.01 SS G_CDS: -0.59 Total: 45.42 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.15 -10.66 -46.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798223778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.551 kcal (2) G-P(sol) polarization free energy of solvation -36.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds