Wall clock time and date at job start Sat Apr 11 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 N 1.46496 * 109.47288 * 270.27879 * 9 8 7 11 11 S 1.65596 * 120.00162 * 164.99956 * 10 9 8 12 12 O 1.42098 * 104.27863 * 181.07005 * 11 10 9 13 13 O 1.42101 * 104.27744 * 308.92275 * 11 10 9 14 14 C 1.81403 * 104.45096 * 64.99734 * 11 10 9 15 15 C 1.52997 * 109.46708 * 179.97438 * 14 11 10 16 16 C 1.50705 * 109.46733 * 180.02562 * 15 14 11 17 17 H 1.08003 * 120.00008 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00047 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99901 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47243 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46796 * 120.00256 * 20 18 16 23 23 H 1.48506 * 109.47012 * 239.99830 * 20 18 16 24 24 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 25 25 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 26 26 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 27 27 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 28 28 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 31 31 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 32 32 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 33 33 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 34 34 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 35 35 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 36 36 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 37 37 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 38 38 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 39 39 H 0.97002 * 119.99568 * 344.99774 * 10 9 8 40 40 H 1.08994 * 109.47096 * 299.99641 * 14 11 10 41 41 H 1.08994 * 109.47070 * 60.00457 * 14 11 10 42 42 H 1.08996 * 109.47546 * 299.99871 * 15 14 11 43 43 H 1.09001 * 109.47364 * 60.00379 * 15 14 11 44 44 H 0.96998 * 119.99501 * 180.02562 * 19 18 16 45 45 H 1.08001 * 120.00274 * 179.72697 * 24 8 7 46 46 H 1.07997 * 120.00460 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4066 -2.1839 3.7828 9 6 3.9089 -2.8942 5.0133 10 7 2.7696 -3.3551 5.8105 11 16 2.9964 -4.4755 7.0086 12 8 1.6948 -4.6938 7.5353 13 8 3.7160 -5.5246 6.3757 14 6 4.0423 -3.6306 8.2264 15 6 4.3255 -4.5738 9.3972 16 6 5.1938 -3.8717 10.4092 17 1 5.5122 -2.8546 10.2344 18 6 5.5827 -4.5282 11.5577 19 7 5.1954 -5.7669 11.7702 20 14 6.6597 -3.6581 12.8116 21 1 6.9556 -2.2815 12.3397 22 1 5.9494 -3.5934 14.1141 23 1 7.9307 -4.4079 12.9777 24 6 3.1758 -0.8214 3.8172 25 6 2.7155 -0.1696 2.6883 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5211 33 1 2.1208 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5208 35 1 2.5357 -2.7986 0.5826 36 1 3.3471 -3.9610 2.5960 37 1 4.5149 -3.7504 4.7167 38 1 4.5143 -2.2090 5.6068 39 1 1.8822 -3.0039 5.6365 40 1 4.9825 -3.3396 7.7582 41 1 3.5283 -2.7419 8.5924 42 1 3.3851 -4.8645 9.8654 43 1 4.8393 -5.4629 9.0315 44 1 5.4687 -6.2286 12.5783 45 1 3.3555 -0.2659 4.7258 46 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798223778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:26 Heat of formation + Delta-G solvation = -125.108994 kcal Electronic energy + Delta-G solvation = -24166.286196 eV Core-core repulsion = 20610.306366 eV Total energy + Delta-G solvation = -3555.979830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.10308 -38.16711 -37.03434 -36.26076 -35.89346 -33.12474 -31.78151 -31.73145 -29.35524 -28.23516 -28.21923 -27.59234 -26.44637 -23.60288 -23.36950 -22.04947 -20.34042 -19.12967 -18.45044 -17.75872 -17.08680 -16.92241 -16.52276 -16.17654 -16.01105 -15.63234 -15.07941 -14.51492 -14.34923 -14.24131 -14.04629 -13.98702 -13.87370 -13.71675 -13.64937 -13.55348 -13.21213 -13.17891 -13.11289 -13.04880 -13.01653 -12.95333 -12.91354 -12.77679 -12.41639 -12.24565 -12.10913 -11.87017 -11.73116 -11.18589 -10.85718 -10.71101 -10.69838 -10.65756 -10.39076 -9.71914 -9.57528 -8.26291 -6.40084 -0.70821 0.34087 0.60670 1.40815 1.41371 1.54706 1.87241 1.90563 2.10028 2.19232 2.37772 2.72882 2.80584 3.02097 3.07237 3.27721 3.73422 3.99824 4.01836 4.13720 4.24394 4.42321 4.46503 4.62181 4.75978 4.82418 4.85815 4.89590 4.90187 4.94114 4.94796 4.96439 4.96931 5.10782 5.26448 5.27872 5.28811 5.50933 5.63949 5.65276 5.68612 5.72510 5.73251 5.77389 6.05396 6.07842 6.22796 6.73988 7.30004 8.86153 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.001991 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.923015 B =14058.561833 C =14681.466747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.127 2.873 3 C -0.458 4.458 4 C -0.461 4.461 5 C -0.380 4.380 6 C -0.102 4.102 7 C -0.133 4.133 8 C -0.100 4.100 9 C 0.145 3.855 10 N -1.105 6.105 11 S 2.622 3.378 12 O -1.000 7.000 13 O -0.998 6.998 14 C -0.586 4.586 15 C 0.018 3.982 16 C -0.537 4.537 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.934 5.934 20 Si 0.975 3.025 21 H -0.255 1.255 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.125 4.125 25 C -0.100 4.100 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.423 0.577 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.006 0.994 43 H 0.007 0.993 44 H 0.267 0.733 45 H 0.134 0.866 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.878 17.385 -27.863 33.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.314 2.686 3 C -0.565 4.565 4 C -0.568 4.568 5 C -0.419 4.419 6 C -0.119 4.119 7 C -0.152 4.152 8 C -0.102 4.102 9 C 0.020 3.980 10 N -0.866 5.866 11 S 2.719 3.281 12 O -0.990 6.990 13 O -0.987 6.987 14 C -0.718 4.718 15 C -0.020 4.020 16 C -0.576 4.576 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.574 5.574 20 Si 0.799 3.201 21 H -0.179 1.179 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.143 4.143 25 C -0.118 4.118 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.135 0.865 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.258 0.742 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.024 0.976 43 H 0.026 0.974 44 H 0.076 0.924 45 H 0.152 0.848 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.030 16.224 -27.657 32.626 hybrid contribution 0.477 0.130 1.355 1.442 sum -5.552 16.354 -26.302 31.465 Atomic orbital electron populations 1.26288 1.21707 1.04308 1.04607 0.77188 0.65121 0.64871 0.61436 1.26219 1.06437 1.18921 1.04960 1.26262 1.06420 1.08353 1.15790 1.28165 1.02764 0.99372 1.11613 1.21358 0.97350 0.95391 0.97843 1.21408 1.00015 1.00062 0.93723 1.19831 1.01353 0.94567 0.94401 1.20452 0.87437 0.99371 0.90724 1.55377 1.17278 1.63619 1.50292 1.04417 0.74290 0.74598 0.74822 1.93501 1.39385 1.85283 1.80867 1.93495 1.75879 1.54865 1.74499 1.30322 1.15841 1.12644 1.13035 1.18840 0.96973 0.93929 0.92298 1.21556 1.31356 1.00481 1.04193 0.90505 1.26143 0.97860 0.95689 1.00766 1.70114 1.46691 1.12723 1.27877 0.85245 0.77885 0.79014 0.77972 1.17861 1.20462 1.20420 1.21441 0.99429 0.93639 0.99835 1.21419 0.97055 1.00783 0.92524 0.91465 0.90406 0.91723 0.91221 0.90402 0.90878 0.91204 0.90383 0.91289 0.84504 0.86498 0.90107 0.88673 0.74157 0.83779 0.83782 0.97557 0.97422 0.92434 0.84816 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -3.83 8.65 113.37 0.98 -2.84 16 2 Si 1.13 7.03 12.32 68.60 0.85 7.87 16 3 C -0.46 -2.95 8.53 113.37 0.97 -1.99 16 4 C -0.46 -3.33 8.53 113.37 0.97 -2.37 16 5 C -0.38 -5.03 4.59 22.27 0.10 -4.93 16 6 C -0.10 -1.63 9.29 22.27 0.21 -1.43 16 7 C -0.13 -2.70 9.70 22.27 0.22 -2.48 16 8 C -0.10 -2.04 5.28 -19.87 -0.10 -2.14 16 9 C 0.15 3.21 6.25 85.63 0.54 3.74 16 10 N -1.10 -28.09 5.88 -190.79 -1.12 -29.21 16 11 S 2.62 93.64 5.46 -56.49 -0.31 93.33 16 12 O -1.00 -42.37 18.08 -127.65 -2.31 -44.68 16 13 O -1.00 -41.96 17.50 -127.65 -2.23 -44.20 16 14 C -0.59 -21.78 6.01 71.98 0.43 -21.35 16 15 C 0.02 0.97 4.98 29.85 0.15 1.12 16 16 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 17 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 18 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 19 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 20 Si 0.98 43.33 29.54 68.60 2.03 45.36 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 24 C -0.12 -2.16 9.70 22.27 0.22 -1.94 16 25 C -0.10 -1.43 9.29 22.27 0.21 -1.22 16 26 H 0.07 0.60 7.96 -2.39 -0.02 0.58 16 27 H 0.08 0.51 7.96 -2.38 -0.02 0.49 16 28 H 0.06 0.61 7.96 -2.39 -0.02 0.59 16 29 H 0.07 0.49 7.96 -2.39 -0.02 0.48 16 30 H 0.08 0.40 7.96 -2.39 -0.02 0.39 16 31 H 0.07 0.44 7.69 -2.38 -0.02 0.42 16 32 H 0.07 0.52 7.69 -2.38 -0.02 0.50 16 33 H 0.08 0.45 7.96 -2.39 -0.02 0.43 16 34 H 0.07 0.54 7.96 -2.39 -0.02 0.53 16 35 H 0.14 1.60 7.43 -2.91 -0.02 1.58 16 36 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.08 1.90 7.64 -2.38 -0.02 1.88 16 38 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 39 H 0.42 9.44 8.61 -96.74 -0.83 8.61 16 40 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 41 H 0.14 4.66 8.14 -2.39 -0.02 4.64 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.13 1.92 8.06 -2.91 -0.02 1.89 16 46 H 0.14 1.30 7.43 -2.91 -0.02 1.28 16 Total: -1.00 -79.14 403.80 2.88 -76.26 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.12 Total: 19.22 kcal Atomic # 6 Polarization: -72.75 SS G_CDS: 5.57 Total: -67.18 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -0.84 Total: -85.99 kcal Atomic # 8 Polarization: -84.34 SS G_CDS: -4.54 Total: -88.88 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.87 Total: 53.23 kcal Atomic # 16 Polarization: 93.64 SS G_CDS: -0.31 Total: 93.33 kcal Total: -79.14 2.88 -76.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798223778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.849 kcal (2) G-P(sol) polarization free energy of solvation -79.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds