Wall clock time and date at job start Sat Apr 11 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00106 * 2 1 4 4 C 1.53005 * 109.47112 * 274.99930 * 3 2 1 5 5 C 1.50698 * 109.47413 * 180.02562 * 4 3 2 6 6 C 1.38218 * 120.01559 * 99.99426 * 5 4 3 7 7 C 1.38226 * 120.02729 * 179.97438 * 6 5 4 8 8 C 1.38265 * 120.04876 * 0.03105 * 7 6 5 9 9 C 1.38178 * 120.02816 * 359.97438 * 8 7 6 10 10 C 1.38440 * 120.01124 * 279.72806 * 5 4 3 11 11 F 1.35103 * 120.02589 * 359.97438 * 10 5 4 12 12 S 1.65607 * 120.00028 * 179.97438 * 2 1 3 13 13 O 1.42102 * 104.27556 * 153.93004 * 12 2 1 14 14 O 1.42098 * 104.27465 * 26.06981 * 12 2 1 15 15 C 1.81401 * 104.44534 * 270.00056 * 12 2 1 16 16 C 1.53010 * 109.46704 * 184.14025 * 15 12 2 17 17 C 1.50700 * 115.54846 * 294.79756 * 16 15 12 18 18 H 1.08007 * 119.99743 * 95.18983 * 17 16 15 19 19 C 1.37873 * 120.00383 * 274.91445 * 17 16 15 20 20 N 1.31521 * 119.99920 * 6.52871 * 19 17 16 21 21 Si 1.86796 * 120.00170 * 186.53062 * 19 17 16 22 22 H 1.48508 * 109.47146 * 89.99984 * 21 19 17 23 23 H 1.48497 * 109.47182 * 209.99404 * 21 19 17 24 24 H 1.48498 * 109.47279 * 329.99874 * 21 19 17 25 25 C 1.52996 * 117.50073 * 80.47127 * 16 15 12 26 26 C 1.52997 * 117.49780 * 149.13454 * 16 15 12 27 27 H 1.08997 * 109.47018 * 270.00115 * 1 2 3 28 28 H 1.09001 * 109.47232 * 30.00526 * 1 2 3 29 29 H 1.09004 * 109.47025 * 150.00395 * 1 2 3 30 30 H 1.08997 * 109.47381 * 34.99698 * 3 2 1 31 31 H 1.08997 * 109.47732 * 154.99999 * 3 2 1 32 32 H 1.09003 * 109.46826 * 299.99644 * 4 3 2 33 33 H 1.09001 * 109.47078 * 59.99875 * 4 3 2 34 34 H 1.07997 * 119.98729 * 0.02562 * 6 5 4 35 35 H 1.07994 * 119.97381 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.98491 * 179.97438 * 8 7 6 37 37 H 1.08003 * 120.01318 * 179.97438 * 9 8 7 38 38 H 1.08996 * 109.47333 * 64.14268 * 15 12 2 39 39 H 1.08994 * 109.47437 * 304.13506 * 15 12 2 40 40 H 0.96990 * 119.99820 * 185.07344 * 20 19 17 41 41 H 1.08989 * 117.50053 * 215.00278 * 25 16 15 42 42 H 1.09000 * 117.49601 * 0.02562 * 25 16 15 43 43 H 1.09003 * 117.50042 * 359.97191 * 26 16 15 44 44 H 1.08999 * 117.50207 * 144.97573 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7732 -1.4371 5 6 3.0977 3.0780 -1.4372 6 6 4.4445 3.0981 -1.7471 7 6 5.1363 4.2948 -1.7478 8 6 4.4821 5.4729 -1.4380 9 6 3.1357 5.4552 -1.1277 10 6 2.4404 4.2576 -1.1323 11 9 1.1226 4.2399 -0.8350 12 16 2.2930 -1.4342 0.0006 13 8 3.5395 -1.1194 -0.6047 14 8 1.3969 -2.3564 -0.6041 15 6 2.5193 -1.8253 1.7575 16 6 3.3698 -3.0900 1.8929 17 6 2.7447 -4.3537 1.3606 18 1 2.9677 -4.6853 0.3572 19 6 1.8925 -5.0896 2.1564 20 7 1.5237 -4.6252 3.3303 21 14 1.2619 -6.7463 1.5673 22 1 2.1945 -7.8155 2.0061 23 1 -0.0839 -6.9967 2.1428 24 1 1.1739 -6.7439 0.0850 25 6 4.8861 -2.9397 1.7555 26 6 4.2647 -3.2106 3.1280 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6502 2.0043 0.5894 31 1 3.1857 1.1177 0.4343 32 1 2.8911 1.0376 -2.0264 33 1 1.3554 1.9242 -1.8714 34 1 4.9565 2.1786 -1.9895 35 1 6.1887 4.3095 -1.9896 36 1 5.0237 6.4073 -1.4384 37 1 2.6251 6.3755 -0.8854 38 1 1.5468 -1.9901 2.2212 39 1 3.0220 -0.9947 2.2528 40 1 0.9845 -5.1736 3.9211 41 1 5.4316 -3.7548 1.2801 42 1 5.2779 -1.9398 1.5690 43 1 4.2480 -2.3887 3.8438 44 1 4.4012 -4.2038 3.5557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830446070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:32 Heat of formation + Delta-G solvation = -70.062114 kcal Electronic energy + Delta-G solvation = -28015.938568 eV Core-core repulsion = 23975.678997 eV Total energy + Delta-G solvation = -4040.259571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.03668 -39.32038 -36.77820 -36.62931 -36.26389 -35.05612 -33.03968 -32.03902 -30.74018 -28.85194 -28.16878 -25.97141 -25.41880 -23.29646 -22.95358 -21.28988 -21.20231 -19.55619 -18.25453 -17.73824 -17.12471 -16.59747 -16.49832 -16.10976 -15.84211 -15.52165 -15.13280 -14.70663 -14.41016 -14.17312 -13.91298 -13.90622 -13.67820 -13.31476 -13.12792 -13.07854 -12.73365 -12.25317 -12.09295 -11.96678 -11.90914 -11.81966 -11.31985 -11.28197 -11.23457 -11.06394 -10.96313 -10.90226 -10.70852 -10.57273 -10.45762 -10.11340 -9.71506 -9.27628 -8.98846 -8.95058 -8.66055 -8.55325 -8.07341 -6.14566 -4.25078 0.91905 0.98704 1.06791 3.28262 3.29750 3.36347 3.39818 3.44261 4.07569 4.38195 4.47356 4.55185 4.59097 4.72526 4.85924 4.94565 5.02318 5.10998 5.14217 5.18251 5.24904 5.32537 5.48854 5.60656 5.67177 5.70969 5.75582 5.85720 5.93011 5.95141 6.02462 6.10617 6.16158 6.18331 6.25522 6.32517 6.39129 6.60869 6.69248 6.70410 6.83825 6.98582 7.23784 7.38377 7.80170 8.19490 8.81164 9.46716 10.93830 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020956 B = 0.003037 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.788354 B = 9216.476474 C = 9779.112461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.014 6.014 3 C 0.134 3.866 4 C -0.103 4.103 5 C -0.109 4.109 6 C -0.085 4.085 7 C -0.129 4.129 8 C -0.099 4.099 9 C -0.156 4.156 10 C 0.098 3.902 11 F -0.138 7.138 12 S 2.604 3.396 13 O -0.970 6.970 14 O -0.946 6.946 15 C -0.554 4.554 16 C 0.042 3.958 17 C -0.513 4.513 18 H 0.068 0.932 19 C 0.081 3.919 20 N -0.874 5.874 21 Si 0.890 3.110 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.267 1.267 25 C -0.208 4.208 26 C -0.140 4.140 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.097 0.903 40 H 0.263 0.737 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 19.387 -6.040 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.849 5.849 3 C 0.008 3.992 4 C -0.142 4.142 5 C -0.110 4.110 6 C -0.103 4.103 7 C -0.147 4.147 8 C -0.117 4.117 9 C -0.174 4.174 10 C 0.078 3.922 11 F -0.116 7.116 12 S 2.702 3.298 13 O -0.960 6.960 14 O -0.937 6.937 15 C -0.687 4.687 16 C 0.040 3.960 17 C -0.550 4.550 18 H 0.086 0.914 19 C -0.124 4.124 20 N -0.510 5.510 21 Si 0.717 3.283 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.246 4.246 26 C -0.180 4.180 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.533 18.927 -6.690 20.233 hybrid contribution -0.773 -0.549 0.726 1.195 sum 1.760 18.377 -5.964 19.401 Atomic orbital electron populations 1.21529 0.78968 1.03786 1.01878 1.57857 1.15109 1.21457 1.90527 1.21090 0.96777 0.85784 0.95543 1.21060 1.00630 0.93326 0.99221 1.19946 0.95111 0.94114 1.01854 1.21162 0.92675 0.99003 0.97419 1.21250 1.00475 0.92335 1.00611 1.21003 0.93550 0.98701 0.98420 1.21125 0.95489 0.96893 1.03925 1.17608 0.78193 0.94289 1.02061 1.91491 1.32092 1.97318 1.90744 1.05339 0.73604 0.71945 0.78899 1.93479 1.44301 1.83179 1.75085 1.93525 1.64443 1.61035 1.74662 1.30025 1.10677 1.06027 1.21954 1.18298 0.85930 0.91180 1.00606 1.20549 1.27163 1.06425 1.00866 0.91353 1.24943 0.94429 0.98045 0.95006 1.70012 1.35712 1.36087 1.09168 0.86598 0.78208 0.83666 0.79865 1.20457 1.20991 1.19091 1.23202 0.98184 1.00767 1.02433 1.22543 1.04742 1.00833 0.89854 0.92881 0.91366 0.89649 0.90716 0.89989 0.89115 0.90255 0.84366 0.85268 0.85219 0.84931 0.84891 0.88494 0.92776 0.89504 0.90696 0.91562 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.66 59.85 0.64 1.79 16 2 N -1.01 -15.96 3.12 -121.76 -0.38 -16.34 16 3 C 0.13 1.81 5.22 -4.04 -0.02 1.79 16 4 C -0.10 -1.32 5.40 -27.88 -0.15 -1.47 16 5 C -0.11 -1.25 5.14 -104.56 -0.54 -1.78 16 6 C -0.08 -0.87 9.67 -39.59 -0.38 -1.25 16 7 C -0.13 -1.08 10.04 -39.58 -0.40 -1.48 16 8 C -0.10 -0.77 10.04 -39.59 -0.40 -1.17 16 9 C -0.16 -1.40 10.03 -39.51 -0.40 -1.79 16 10 C 0.10 1.08 7.24 -39.42 -0.29 0.79 16 11 F -0.14 -1.63 16.66 2.25 0.04 -1.59 16 12 S 2.60 52.98 5.13 -107.50 -0.55 52.43 16 13 O -0.97 -20.52 16.75 -57.54 -0.96 -21.48 16 14 O -0.95 -22.58 16.13 -57.54 -0.93 -23.50 16 15 C -0.55 -11.76 6.03 37.16 0.22 -11.53 16 16 C 0.04 1.03 1.33 -155.66 -0.21 0.82 16 17 C -0.51 -14.07 8.10 -34.44 -0.28 -14.35 16 18 H 0.07 1.92 7.82 -52.48 -0.41 1.51 16 19 C 0.08 2.20 5.39 -17.82 -0.10 2.11 16 20 N -0.87 -24.11 12.93 55.43 0.72 -23.40 16 21 Si 0.89 21.40 29.55 -169.99 -5.02 16.38 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.21 -4.55 9.96 -26.69 -0.27 -4.82 16 26 C -0.14 -3.20 9.44 -26.69 -0.25 -3.45 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 29 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 30 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 31 H 0.08 1.09 7.61 -51.93 -0.40 0.70 16 32 H 0.09 1.25 7.76 -51.93 -0.40 0.85 16 33 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 34 H 0.14 1.36 8.04 -52.49 -0.42 0.94 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.13 2.96 8.14 -51.93 -0.42 2.53 16 39 H 0.10 1.75 8.09 -51.93 -0.42 1.33 16 40 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 41 H 0.09 1.87 8.14 -51.94 -0.42 1.44 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -32.18 386.96 -10.67 -42.84 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.60 Total: 4.63 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: -2.81 Total: -35.80 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.34 Total: -39.74 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.89 Total: -44.99 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 52.98 SS G_CDS: -0.55 Total: 52.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.18 -10.67 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830446070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.218 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds