Wall clock time and date at job start Sat Apr 11 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00106 * 2 1 4 4 C 1.53005 * 109.47112 * 274.99930 * 3 2 1 5 5 C 1.50698 * 109.47413 * 180.02562 * 4 3 2 6 6 C 1.38218 * 120.01559 * 99.99426 * 5 4 3 7 7 C 1.38226 * 120.02729 * 179.97438 * 6 5 4 8 8 C 1.38265 * 120.04876 * 0.03105 * 7 6 5 9 9 C 1.38178 * 120.02816 * 359.97438 * 8 7 6 10 10 C 1.38440 * 120.01124 * 279.72806 * 5 4 3 11 11 F 1.35103 * 120.02589 * 359.97438 * 10 5 4 12 12 S 1.65607 * 120.00028 * 179.97438 * 2 1 3 13 13 O 1.42102 * 104.27556 * 153.93004 * 12 2 1 14 14 O 1.42098 * 104.27465 * 26.06981 * 12 2 1 15 15 C 1.81401 * 104.44534 * 270.00056 * 12 2 1 16 16 C 1.53010 * 109.46704 * 184.14025 * 15 12 2 17 17 C 1.50700 * 115.54846 * 294.79756 * 16 15 12 18 18 H 1.08007 * 119.99743 * 95.18983 * 17 16 15 19 19 C 1.37873 * 120.00383 * 274.91445 * 17 16 15 20 20 N 1.31521 * 119.99920 * 6.52871 * 19 17 16 21 21 Si 1.86796 * 120.00170 * 186.53062 * 19 17 16 22 22 H 1.48508 * 109.47146 * 89.99984 * 21 19 17 23 23 H 1.48497 * 109.47182 * 209.99404 * 21 19 17 24 24 H 1.48498 * 109.47279 * 329.99874 * 21 19 17 25 25 C 1.52996 * 117.50073 * 80.47127 * 16 15 12 26 26 C 1.52997 * 117.49780 * 149.13454 * 16 15 12 27 27 H 1.08997 * 109.47018 * 270.00115 * 1 2 3 28 28 H 1.09001 * 109.47232 * 30.00526 * 1 2 3 29 29 H 1.09004 * 109.47025 * 150.00395 * 1 2 3 30 30 H 1.08997 * 109.47381 * 34.99698 * 3 2 1 31 31 H 1.08997 * 109.47732 * 154.99999 * 3 2 1 32 32 H 1.09003 * 109.46826 * 299.99644 * 4 3 2 33 33 H 1.09001 * 109.47078 * 59.99875 * 4 3 2 34 34 H 1.07997 * 119.98729 * 0.02562 * 6 5 4 35 35 H 1.07994 * 119.97381 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.98491 * 179.97438 * 8 7 6 37 37 H 1.08003 * 120.01318 * 179.97438 * 9 8 7 38 38 H 1.08996 * 109.47333 * 64.14268 * 15 12 2 39 39 H 1.08994 * 109.47437 * 304.13506 * 15 12 2 40 40 H 0.96990 * 119.99820 * 185.07344 * 20 19 17 41 41 H 1.08989 * 117.50053 * 215.00278 * 25 16 15 42 42 H 1.09000 * 117.49601 * 0.02562 * 25 16 15 43 43 H 1.09003 * 117.50042 * 359.97191 * 26 16 15 44 44 H 1.08999 * 117.50207 * 144.97573 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7732 -1.4371 5 6 3.0977 3.0780 -1.4372 6 6 4.4445 3.0981 -1.7471 7 6 5.1363 4.2948 -1.7478 8 6 4.4821 5.4729 -1.4380 9 6 3.1357 5.4552 -1.1277 10 6 2.4404 4.2576 -1.1323 11 9 1.1226 4.2399 -0.8350 12 16 2.2930 -1.4342 0.0006 13 8 3.5395 -1.1194 -0.6047 14 8 1.3969 -2.3564 -0.6041 15 6 2.5193 -1.8253 1.7575 16 6 3.3698 -3.0900 1.8929 17 6 2.7447 -4.3537 1.3606 18 1 2.9677 -4.6853 0.3572 19 6 1.8925 -5.0896 2.1564 20 7 1.5237 -4.6252 3.3303 21 14 1.2619 -6.7463 1.5673 22 1 2.1945 -7.8155 2.0061 23 1 -0.0839 -6.9967 2.1428 24 1 1.1739 -6.7439 0.0850 25 6 4.8861 -2.9397 1.7555 26 6 4.2647 -3.2106 3.1280 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6502 2.0043 0.5894 31 1 3.1857 1.1177 0.4343 32 1 2.8911 1.0376 -2.0264 33 1 1.3554 1.9242 -1.8714 34 1 4.9565 2.1786 -1.9895 35 1 6.1887 4.3095 -1.9896 36 1 5.0237 6.4073 -1.4384 37 1 2.6251 6.3755 -0.8854 38 1 1.5468 -1.9901 2.2212 39 1 3.0220 -0.9947 2.2528 40 1 0.9845 -5.1736 3.9211 41 1 5.4316 -3.7548 1.2801 42 1 5.2779 -1.9398 1.5690 43 1 4.2480 -2.3887 3.8438 44 1 4.4012 -4.2038 3.5557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830446070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:31 Heat of formation + Delta-G solvation = -88.297484 kcal Electronic energy + Delta-G solvation = -28016.729313 eV Core-core repulsion = 23975.678997 eV Total energy + Delta-G solvation = -4041.050316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.125 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -49.85274 -40.05760 -38.58481 -38.05104 -37.69168 -36.74697 -34.09449 -33.94654 -31.43813 -29.90159 -29.74391 -27.55648 -26.96450 -24.33315 -23.67016 -23.00141 -22.11007 -21.40612 -19.78081 -18.61620 -18.45946 -18.34191 -17.46839 -17.22010 -16.94624 -16.73919 -16.50710 -16.48291 -15.76548 -15.49713 -15.13798 -15.05500 -14.88721 -14.71380 -14.11978 -13.94854 -13.77593 -13.76298 -13.57919 -13.50672 -13.16835 -12.99650 -12.91089 -12.90261 -12.83401 -12.59390 -12.45666 -12.37362 -12.22920 -11.96949 -11.90874 -11.75166 -11.54289 -10.87263 -10.56484 -10.32319 -9.93181 -9.75698 -9.49827 -8.21217 -6.35810 -0.56532 0.22321 0.29982 1.36878 1.39801 1.50280 1.88482 2.39366 2.67721 2.96870 3.06763 3.31843 3.34037 3.38753 3.58564 3.77468 3.86438 4.01207 4.09776 4.19967 4.24889 4.29504 4.43518 4.45425 4.48540 4.51458 4.58567 4.67194 4.70486 4.82282 4.92989 4.95480 4.96468 5.04445 5.12180 5.18446 5.19809 5.27841 5.44301 5.47720 5.54371 5.57998 5.63933 5.70468 6.00377 6.20683 6.71194 7.37106 8.86666 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020956 B = 0.003037 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.788354 B = 9216.476474 C = 9779.112461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -1.006 6.006 3 C 0.128 3.872 4 C -0.100 4.100 5 C -0.125 4.125 6 C -0.100 4.100 7 C -0.126 4.126 8 C -0.092 4.092 9 C -0.156 4.156 10 C 0.079 3.921 11 F -0.147 7.147 12 S 2.618 3.382 13 O -0.982 6.982 14 O -0.989 6.989 15 C -0.553 4.553 16 C 0.009 3.991 17 C -0.532 4.532 18 H 0.048 0.952 19 C 0.041 3.959 20 N -0.892 5.892 21 Si 0.935 3.065 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.194 4.194 26 C -0.138 4.138 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.152 0.848 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.265 0.735 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.298 21.948 -5.823 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.844 5.844 3 C 0.003 3.997 4 C -0.139 4.139 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.144 4.144 8 C -0.109 4.109 9 C -0.175 4.175 10 C 0.060 3.940 11 F -0.126 7.126 12 S 2.716 3.284 13 O -0.973 6.973 14 O -0.980 6.980 15 C -0.686 4.686 16 C 0.006 3.994 17 C -0.569 4.569 18 H 0.066 0.934 19 C -0.162 4.162 20 N -0.529 5.529 21 Si 0.760 3.240 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.200 1.200 25 C -0.232 4.232 26 C -0.177 4.177 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.153 0.847 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.170 0.830 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.284 21.477 -6.466 22.668 hybrid contribution -0.958 -1.229 0.615 1.675 sum 2.326 20.248 -5.851 21.204 Atomic orbital electron populations 1.21746 0.77583 1.04401 1.03158 1.57486 1.15894 1.20779 1.90244 1.21347 0.96934 0.84831 0.96560 1.20955 1.00767 0.93856 0.98366 1.19866 0.95626 0.93589 1.03566 1.21279 0.92485 0.99937 0.98119 1.21573 1.01622 0.91750 0.99440 1.21414 0.93158 0.99782 0.96580 1.21439 0.96079 0.96830 1.03114 1.17816 0.78037 0.94945 1.03182 1.91461 1.32729 1.97394 1.90981 1.04634 0.73127 0.72330 0.78298 1.93451 1.45087 1.83536 1.75181 1.93467 1.65544 1.63419 1.75533 1.29931 1.09753 1.05834 1.23066 1.18422 0.87464 0.91406 1.02067 1.20728 1.27729 1.08233 1.00200 0.93371 1.25523 0.94721 1.00625 0.95329 1.70057 1.36225 1.36888 1.09685 0.85904 0.78311 0.80983 0.78824 1.19258 1.20098 1.20047 1.23252 0.96505 1.02040 1.01368 1.22503 1.04359 1.00608 0.90266 0.91325 0.88423 0.91371 0.88543 0.89844 0.90897 0.90119 0.84750 0.82865 0.81962 0.82990 0.86269 0.85271 0.92571 0.89787 0.88180 0.89478 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.02 10.66 127.77 1.36 3.38 16 2 N -1.01 -30.97 3.12 -539.14 -1.68 -32.65 16 3 C 0.13 3.30 5.22 86.38 0.45 3.75 16 4 C -0.10 -2.51 5.40 29.85 0.16 -2.35 16 5 C -0.12 -2.74 5.14 -19.82 -0.10 -2.84 16 6 C -0.10 -1.94 9.67 22.26 0.22 -1.72 16 7 C -0.13 -1.77 10.04 22.27 0.22 -1.55 16 8 C -0.09 -1.11 10.04 22.26 0.22 -0.88 16 9 C -0.16 -2.37 10.03 22.31 0.22 -2.14 16 10 C 0.08 1.62 7.24 22.38 0.16 1.78 16 11 F -0.15 -3.27 16.66 44.97 0.75 -2.52 16 12 S 2.62 107.07 5.13 -56.49 -0.29 106.78 16 13 O -0.98 -41.54 16.75 -127.65 -2.14 -43.68 16 14 O -0.99 -48.63 16.13 -127.65 -2.06 -50.69 16 15 C -0.55 -23.26 6.03 71.99 0.43 -22.83 16 16 C 0.01 0.42 1.33 -52.93 -0.07 0.35 16 17 C -0.53 -29.76 8.10 25.60 0.21 -29.55 16 18 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 19 C 0.04 2.25 5.39 84.65 0.46 2.71 16 20 N -0.89 -49.57 12.93 21.45 0.28 -49.29 16 21 Si 0.93 44.34 29.55 68.60 2.03 46.37 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 25 C -0.19 -8.31 9.96 30.62 0.30 -8.01 16 26 C -0.14 -6.21 9.44 30.62 0.29 -5.92 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 2.01 8.07 -2.39 -0.02 1.99 16 29 H 0.07 2.06 6.91 -2.39 -0.02 2.05 16 30 H 0.10 2.08 8.11 -2.39 -0.02 2.06 16 31 H 0.08 2.12 7.61 -2.39 -0.02 2.10 16 32 H 0.07 2.05 7.76 -2.39 -0.02 2.03 16 33 H 0.08 1.93 7.94 -2.39 -0.02 1.91 16 34 H 0.13 2.60 8.04 -2.91 -0.02 2.58 16 35 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.12 5.33 8.14 -2.39 -0.02 5.31 16 39 H 0.13 4.43 8.09 -2.39 -0.02 4.41 16 40 H 0.27 13.97 8.32 -92.72 -0.77 13.20 16 41 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 42 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 43 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 44 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -70.05 386.96 2.41 -67.63 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.99 Total: 23.88 kcal Atomic # 6 Polarization: -70.38 SS G_CDS: 4.54 Total: -65.83 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -1.40 Total: -81.94 kcal Atomic # 8 Polarization: -90.17 SS G_CDS: -4.20 Total: -94.37 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.75 Total: -2.52 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 107.07 SS G_CDS: -0.29 Total: 106.78 kcal Total: -70.05 2.41 -67.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830446070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.664 kcal (2) G-P(sol) polarization free energy of solvation -70.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds