Wall clock time and date at job start Sat Apr 11 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29026 * 126.43381 * 2 1 4 4 N 1.28740 * 108.80275 * 180.02562 * 3 2 1 5 5 N 1.28843 * 109.40189 * 359.76466 * 4 3 2 6 6 C 1.31071 * 107.98477 * 0.37529 * 5 4 3 7 7 C 1.50703 * 126.65699 * 179.89284 * 6 5 4 8 8 C 1.53000 * 109.47356 * 269.69315 * 7 6 5 9 9 O 1.45204 * 109.47088 * 180.02562 * 8 7 6 10 10 C 1.34865 * 116.99909 * 175.28263 * 9 8 7 11 11 O 1.21589 * 119.99962 * 4.18199 * 10 9 8 12 12 C 1.46715 * 119.99690 * 184.18804 * 10 9 8 13 13 C 1.36213 * 125.44428 * 185.29691 * 12 10 9 14 14 C 1.41659 * 107.74150 * 180.02562 * 13 12 10 15 15 C 1.40041 * 133.33740 * 179.97438 * 14 13 12 16 16 C 1.36563 * 119.83291 * 180.02562 * 15 14 13 17 17 C 1.38864 * 120.60036 * 359.97438 * 16 15 14 18 18 C 1.37843 * 120.63817 * 0.27555 * 17 16 15 19 19 C 1.39089 * 119.81206 * 359.50130 * 18 17 16 20 20 N 1.37831 * 133.15275 * 180.15263 * 19 18 17 21 21 C 1.36872 * 125.61921 * 0.29139 * 20 19 18 22 22 H 1.07998 * 120.00024 * 218.38398 * 21 20 19 23 23 C 1.39027 * 119.99959 * 38.37785 * 21 20 19 24 24 N 1.31344 * 120.00023 * 17.62777 * 23 21 20 25 25 Si 1.86802 * 119.99900 * 197.62373 * 23 21 20 26 26 H 1.48492 * 109.46980 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.46971 * 120.00514 * 25 23 21 28 28 H 1.48504 * 109.46950 * 240.00344 * 25 23 21 29 29 H 1.08998 * 109.47778 * 269.98049 * 1 2 3 30 30 H 1.09004 * 109.47361 * 29.98252 * 1 2 3 31 31 H 1.09005 * 109.46875 * 149.98025 * 1 2 3 32 32 H 1.08999 * 109.47357 * 149.68544 * 7 6 5 33 33 H 1.09002 * 109.46945 * 29.69196 * 7 6 5 34 34 H 1.08991 * 109.47324 * 59.99603 * 8 7 6 35 35 H 1.08999 * 109.46715 * 299.99412 * 8 7 6 36 36 H 1.07997 * 126.13150 * 0.02562 * 13 12 10 37 37 H 1.08002 * 120.08871 * 0.02562 * 15 14 13 38 38 H 1.07996 * 119.70166 * 180.02562 * 16 15 14 39 39 H 1.08004 * 119.68583 * 180.02562 * 17 16 15 40 40 H 1.08004 * 120.09661 * 179.70531 * 18 17 16 41 41 H 0.96999 * 120.00260 * 184.93955 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0381 0.0000 4 7 3.4582 0.6481 -0.0005 5 7 3.4980 -0.6397 0.0041 6 6 2.2645 -1.0827 -0.0005 7 6 1.8264 -2.5247 0.0001 8 6 1.6769 -3.0129 -1.4422 9 8 1.2542 -4.4020 -1.4416 10 6 0.9806 -4.9593 -2.6389 11 8 1.1650 -4.3262 -3.6605 12 6 0.4603 -6.3293 -2.7086 13 6 0.2432 -7.0345 -3.8536 14 6 -0.2604 -8.3070 -3.4879 15 6 -0.6571 -9.4312 -4.2228 16 6 -1.1125 -10.5421 -3.5722 17 6 -1.1860 -10.5690 -2.1858 18 6 -0.8062 -9.4732 -1.4408 19 6 -0.3346 -8.3318 -2.0807 20 7 0.1115 -7.1107 -1.6229 21 6 0.1953 -6.7339 -0.3097 22 1 -0.0538 -5.7235 -0.0209 23 6 0.6009 -7.6519 0.6523 24 7 1.2263 -8.7489 0.2909 25 14 0.2566 -7.3250 2.4590 26 1 -0.4558 -6.0299 2.6007 27 1 -0.5877 -8.4166 3.0073 28 1 1.5394 -7.2692 3.2051 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3634 0.8902 -0.5136 31 1 -0.3633 -0.8899 -0.5142 32 1 0.8697 -2.6136 0.5148 33 1 2.5727 -3.1310 0.5134 34 1 2.6335 -2.9240 -1.9569 35 1 0.9305 -2.4066 -1.9554 36 1 0.4229 -6.6860 -4.8599 37 1 -0.6030 -9.4196 -5.3014 38 1 -1.4174 -11.4080 -4.1411 39 1 -1.5481 -11.4556 -1.6865 40 1 -0.8715 -9.5019 -0.3632 41 1 1.4457 -9.4227 0.9533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869388087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:37 Heat of formation + Delta-G solvation = 94.228962 kcal Electronic energy + Delta-G solvation = -28801.542903 eV Core-core repulsion = 24685.176290 eV Total energy + Delta-G solvation = -4116.366613 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.39495 -40.63670 -39.47367 -36.45749 -36.02879 -35.86819 -34.23437 -33.73105 -30.84817 -30.72749 -29.17290 -28.69715 -28.22979 -25.13815 -24.97035 -23.68133 -23.15052 -21.73612 -21.13395 -20.54086 -19.39968 -18.17101 -17.70605 -17.56276 -17.20015 -16.33987 -16.02861 -15.51575 -15.09278 -14.90272 -14.70316 -14.62795 -14.12560 -13.87485 -13.79727 -13.30295 -13.13422 -13.03412 -12.82648 -12.68314 -12.41357 -12.10155 -11.96306 -11.86327 -11.83874 -11.39229 -11.34391 -11.26254 -11.12117 -10.85949 -10.68410 -10.44203 -10.34032 -10.29489 -10.11614 -9.90980 -9.26137 -8.76973 -7.33032 -7.02678 -6.67475 -4.59222 0.94894 1.54295 1.70917 2.00735 2.65821 2.79089 2.89279 2.91919 2.92800 2.98103 3.66232 3.86774 3.90819 3.97279 4.39794 4.41683 4.50880 4.57580 4.69009 4.81123 4.89813 4.97840 5.05697 5.19504 5.44631 5.47133 5.58536 5.68825 5.77674 5.87424 5.90354 6.04663 6.30265 6.43090 6.52727 6.68536 6.80469 6.89734 6.98461 7.04024 7.37121 7.48119 7.55335 7.78704 7.89611 8.23155 8.29607 8.39177 8.67677 9.15056 10.07041 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.003240 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.149720 B = 8641.064737 C =10068.445453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.307 5.307 3 N -0.096 5.096 4 N -0.076 5.076 5 N -0.294 5.294 6 C 0.193 3.807 7 C -0.041 4.041 8 C 0.071 3.929 9 O -0.329 6.329 10 C 0.549 3.451 11 O -0.524 6.524 12 C -0.023 4.023 13 C -0.159 4.159 14 C -0.131 4.131 15 C -0.085 4.085 16 C -0.157 4.157 17 C -0.147 4.147 18 C -0.052 4.052 19 C 0.093 3.907 20 N -0.237 5.237 21 C -0.342 4.342 22 H 0.117 0.883 23 C 0.054 3.946 24 N -0.813 5.813 25 Si 0.926 3.074 26 H -0.261 1.261 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.134 0.866 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 7.101 2.119 9.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.109 5.109 3 N -0.082 5.082 4 N -0.069 5.069 5 N -0.144 5.144 6 C -0.085 4.085 7 C -0.081 4.081 8 C -0.006 4.006 9 O -0.245 6.245 10 C 0.397 3.603 11 O -0.415 6.415 12 C -0.136 4.136 13 C -0.187 4.187 14 C -0.135 4.135 15 C -0.104 4.104 16 C -0.176 4.176 17 C -0.167 4.167 18 C -0.072 4.072 19 C -0.023 4.023 20 N 0.101 4.899 21 C -0.470 4.470 22 H 0.134 0.866 23 C -0.160 4.160 24 N -0.442 5.442 25 Si 0.750 3.250 26 H -0.185 1.185 27 H -0.197 1.197 28 H -0.198 1.198 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.152 0.848 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.469 8.374 2.313 9.770 hybrid contribution -0.701 -0.436 0.853 1.187 sum -5.170 7.938 3.166 9.988 Atomic orbital electron populations 1.22498 0.71241 1.06964 1.05990 1.48454 1.10869 1.04276 1.47288 1.78876 0.98019 1.12673 1.18656 1.78632 1.09655 1.03812 1.14839 1.75082 1.17513 1.03431 1.18369 1.25786 0.86732 0.93818 1.02167 1.20033 1.05266 0.84444 0.98357 1.22679 1.01310 0.81407 0.95166 1.86837 1.78247 1.25928 1.33489 1.20056 0.73888 0.85656 0.80715 1.90812 1.52001 1.62955 1.35686 1.18979 1.14352 0.91227 0.89038 1.20306 1.09162 0.93200 0.95993 1.17929 1.07894 0.94927 0.92793 1.20062 0.99964 0.92378 0.97958 1.20297 1.05029 0.97851 0.94388 1.20594 1.04814 0.97546 0.93781 1.20109 0.97332 0.90660 0.99057 1.18130 1.03292 0.89207 0.91683 1.40113 1.36848 1.08590 1.04327 1.19956 1.46887 1.00464 0.79655 0.86598 1.25639 0.93012 0.95703 1.01605 1.70010 1.28673 1.08299 1.37178 0.85887 0.78920 0.79603 0.80625 1.18455 1.19652 1.19828 0.88063 0.87249 0.87298 0.87567 0.85749 0.90344 0.91552 0.84829 0.87618 0.87774 0.87551 0.86771 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 11.09 59.85 0.66 1.04 16 2 N -0.31 -3.20 3.75 -65.03 -0.24 -3.44 16 3 N -0.10 -1.27 13.29 60.35 0.80 -0.47 16 4 N -0.08 -1.17 13.43 60.35 0.81 -0.36 16 5 N -0.29 -4.44 12.36 32.70 0.40 -4.04 16 6 C 0.19 2.32 7.39 -155.44 -1.15 1.17 16 7 C -0.04 -0.44 5.74 -27.88 -0.16 -0.60 16 8 C 0.07 0.96 5.49 37.16 0.20 1.17 16 9 O -0.33 -5.95 8.03 -40.95 -0.33 -6.28 16 10 C 0.55 11.44 7.90 34.15 0.27 11.71 16 11 O -0.52 -11.22 16.62 -19.33 -0.32 -11.54 16 12 C -0.02 -0.52 6.76 -82.28 -0.56 -1.08 16 13 C -0.16 -3.50 10.55 -39.01 -0.41 -3.91 16 14 C -0.13 -2.93 6.16 -106.90 -0.66 -3.59 16 15 C -0.08 -1.64 10.06 -39.51 -0.40 -2.04 16 16 C -0.16 -2.85 9.97 -39.95 -0.40 -3.25 16 17 C -0.15 -2.82 10.02 -39.49 -0.40 -3.21 16 18 C -0.05 -1.15 8.55 -39.41 -0.34 -1.49 16 19 C 0.09 2.21 6.08 -83.83 -0.51 1.70 16 20 N -0.24 -5.71 2.83 -56.10 -0.16 -5.86 16 21 C -0.34 -7.91 8.73 -15.01 -0.13 -8.04 16 22 H 0.12 2.51 6.88 -52.49 -0.36 2.15 16 23 C 0.05 1.22 4.44 -17.47 -0.08 1.14 16 24 N -0.81 -19.57 10.89 55.50 0.60 -18.97 16 25 Si 0.93 16.93 29.59 -169.99 -5.03 11.90 16 26 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 27 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 28 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 0.42 7.75 -51.93 -0.40 0.02 16 32 H 0.11 0.88 7.81 -51.93 -0.41 0.48 16 33 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 39 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.11 2.56 6.44 -52.48 -0.34 2.22 16 41 H 0.28 6.30 8.31 -40.82 -0.34 5.96 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -30.91 361.10 -6.51 -37.42 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.44 Total: 5.47 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -4.04 Total: -9.27 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 2.22 Total: -33.14 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.65 Total: -17.82 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.91 -6.51 -37.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869388087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.649 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds