Wall clock time and date at job start Sat Apr 11 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29026 * 126.43381 * 2 1 4 4 N 1.28740 * 108.80275 * 180.02562 * 3 2 1 5 5 N 1.28843 * 109.40189 * 359.76466 * 4 3 2 6 6 C 1.31071 * 107.98477 * 0.37529 * 5 4 3 7 7 C 1.50703 * 126.65699 * 179.89284 * 6 5 4 8 8 C 1.53000 * 109.47356 * 269.69315 * 7 6 5 9 9 O 1.45204 * 109.47088 * 180.02562 * 8 7 6 10 10 C 1.34865 * 116.99909 * 175.28263 * 9 8 7 11 11 O 1.21589 * 119.99962 * 4.18199 * 10 9 8 12 12 C 1.46715 * 119.99690 * 184.18804 * 10 9 8 13 13 C 1.36213 * 125.44428 * 185.29691 * 12 10 9 14 14 C 1.41659 * 107.74150 * 180.02562 * 13 12 10 15 15 C 1.40041 * 133.33740 * 179.97438 * 14 13 12 16 16 C 1.36563 * 119.83291 * 180.02562 * 15 14 13 17 17 C 1.38864 * 120.60036 * 359.97438 * 16 15 14 18 18 C 1.37843 * 120.63817 * 0.27555 * 17 16 15 19 19 C 1.39089 * 119.81206 * 359.50130 * 18 17 16 20 20 N 1.37831 * 133.15275 * 180.15263 * 19 18 17 21 21 C 1.36872 * 125.61921 * 0.29139 * 20 19 18 22 22 H 1.07998 * 120.00024 * 218.38398 * 21 20 19 23 23 C 1.39027 * 119.99959 * 38.37785 * 21 20 19 24 24 N 1.31344 * 120.00023 * 17.62777 * 23 21 20 25 25 Si 1.86802 * 119.99900 * 197.62373 * 23 21 20 26 26 H 1.48492 * 109.46980 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.46971 * 120.00514 * 25 23 21 28 28 H 1.48504 * 109.46950 * 240.00344 * 25 23 21 29 29 H 1.08998 * 109.47778 * 269.98049 * 1 2 3 30 30 H 1.09004 * 109.47361 * 29.98252 * 1 2 3 31 31 H 1.09005 * 109.46875 * 149.98025 * 1 2 3 32 32 H 1.08999 * 109.47357 * 149.68544 * 7 6 5 33 33 H 1.09002 * 109.46945 * 29.69196 * 7 6 5 34 34 H 1.08991 * 109.47324 * 59.99603 * 8 7 6 35 35 H 1.08999 * 109.46715 * 299.99412 * 8 7 6 36 36 H 1.07997 * 126.13150 * 0.02562 * 13 12 10 37 37 H 1.08002 * 120.08871 * 0.02562 * 15 14 13 38 38 H 1.07996 * 119.70166 * 180.02562 * 16 15 14 39 39 H 1.08004 * 119.68583 * 180.02562 * 17 16 15 40 40 H 1.08004 * 120.09661 * 179.70531 * 18 17 16 41 41 H 0.96999 * 120.00260 * 184.93955 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0381 0.0000 4 7 3.4582 0.6481 -0.0005 5 7 3.4980 -0.6397 0.0041 6 6 2.2645 -1.0827 -0.0005 7 6 1.8264 -2.5247 0.0001 8 6 1.6769 -3.0129 -1.4422 9 8 1.2542 -4.4020 -1.4416 10 6 0.9806 -4.9593 -2.6389 11 8 1.1650 -4.3262 -3.6605 12 6 0.4603 -6.3293 -2.7086 13 6 0.2432 -7.0345 -3.8536 14 6 -0.2604 -8.3070 -3.4879 15 6 -0.6571 -9.4312 -4.2228 16 6 -1.1125 -10.5421 -3.5722 17 6 -1.1860 -10.5690 -2.1858 18 6 -0.8062 -9.4732 -1.4408 19 6 -0.3346 -8.3318 -2.0807 20 7 0.1115 -7.1107 -1.6229 21 6 0.1953 -6.7339 -0.3097 22 1 -0.0538 -5.7235 -0.0209 23 6 0.6009 -7.6519 0.6523 24 7 1.2263 -8.7489 0.2909 25 14 0.2566 -7.3250 2.4590 26 1 -0.4558 -6.0299 2.6007 27 1 -0.5877 -8.4166 3.0073 28 1 1.5394 -7.2692 3.2051 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3634 0.8902 -0.5136 31 1 -0.3633 -0.8899 -0.5142 32 1 0.8697 -2.6136 0.5148 33 1 2.5727 -3.1310 0.5134 34 1 2.6335 -2.9240 -1.9569 35 1 0.9305 -2.4066 -1.9554 36 1 0.4229 -6.6860 -4.8599 37 1 -0.6030 -9.4196 -5.3014 38 1 -1.4174 -11.4080 -4.1411 39 1 -1.5481 -11.4556 -1.6865 40 1 -0.8715 -9.5019 -0.3632 41 1 1.4457 -9.4227 0.9533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869388087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:35 Heat of formation + Delta-G solvation = 77.553540 kcal Electronic energy + Delta-G solvation = -28802.266004 eV Core-core repulsion = 24685.176290 eV Total energy + Delta-G solvation = -4117.089714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -45.36071 -42.25230 -40.99924 -37.85289 -37.58359 -36.79482 -35.40758 -35.28098 -32.47670 -31.79868 -30.72553 -29.90910 -29.28391 -26.74508 -26.29520 -24.78183 -24.35575 -22.74807 -22.68831 -22.09209 -21.02216 -19.77082 -18.90235 -18.44531 -18.40878 -17.71294 -17.50071 -17.09504 -16.45699 -16.37682 -15.95498 -15.74922 -15.24097 -15.10758 -14.71444 -14.65587 -14.59978 -14.50349 -14.20350 -13.61404 -13.57591 -13.49999 -13.40488 -13.19048 -12.97352 -12.90847 -12.77173 -12.35108 -12.33755 -12.10549 -11.95828 -11.94417 -11.80844 -11.65183 -11.47449 -11.20942 -10.90976 -10.41820 -8.97543 -8.68443 -8.31105 -6.32751 -0.07218 0.02117 0.91081 0.99756 1.10299 1.18323 1.43215 1.45845 1.58107 1.61570 2.14164 2.32149 2.75186 2.89455 2.96819 3.12680 3.36709 3.60572 3.68678 3.92566 4.00242 4.11499 4.20560 4.21918 4.27381 4.44565 4.51509 4.52732 4.59310 4.65957 4.69468 4.74214 4.82858 4.98111 5.10032 5.15974 5.22287 5.26726 5.35484 5.46208 5.76186 5.91648 5.97477 6.16924 6.30920 6.59655 6.70039 7.01451 7.39286 7.47355 8.42510 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.003240 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.149720 B = 8641.064737 C =10068.445453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.292 5.292 3 N -0.100 5.100 4 N -0.109 5.109 5 N -0.327 5.327 6 C 0.195 3.805 7 C -0.029 4.029 8 C 0.068 3.932 9 O -0.333 6.333 10 C 0.552 3.448 11 O -0.537 6.537 12 C -0.050 4.050 13 C -0.166 4.166 14 C -0.153 4.153 15 C -0.089 4.089 16 C -0.152 4.152 17 C -0.135 4.135 18 C -0.083 4.083 19 C 0.065 3.935 20 N -0.255 5.255 21 C -0.361 4.361 22 H 0.125 0.875 23 C 0.018 3.982 24 N -0.853 5.853 25 Si 0.990 3.010 26 H -0.241 1.241 27 H -0.271 1.271 28 H -0.276 1.276 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.139 0.861 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 6.682 2.440 10.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.094 5.094 3 N -0.086 5.086 4 N -0.102 5.102 5 N -0.177 5.177 6 C -0.083 4.083 7 C -0.069 4.069 8 C -0.007 4.007 9 O -0.248 6.248 10 C 0.401 3.599 11 O -0.429 6.429 12 C -0.162 4.162 13 C -0.194 4.194 14 C -0.157 4.157 15 C -0.108 4.108 16 C -0.170 4.170 17 C -0.156 4.156 18 C -0.103 4.103 19 C -0.050 4.050 20 N 0.083 4.917 21 C -0.489 4.489 22 H 0.142 0.858 23 C -0.192 4.192 24 N -0.482 5.482 25 Si 0.810 3.190 26 H -0.164 1.164 27 H -0.196 1.196 28 H -0.201 1.201 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.139 0.861 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.119 0.881 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.405 7.977 2.633 10.564 hybrid contribution -0.194 -0.357 0.649 0.766 sum -6.599 7.620 3.282 10.601 Atomic orbital electron populations 1.23084 0.68063 1.08697 1.08276 1.48811 1.12396 1.03069 1.45173 1.78783 0.97857 1.13563 1.18447 1.78606 1.10814 1.04157 1.16659 1.74990 1.19570 1.03635 1.19487 1.25774 0.86280 0.94353 1.01919 1.19997 1.06893 0.83456 0.96563 1.22923 1.01097 0.79378 0.97332 1.86788 1.77789 1.28221 1.32048 1.19839 0.73633 0.85209 0.81251 1.90786 1.52705 1.63184 1.36197 1.19435 1.15008 0.92391 0.89386 1.20589 1.08873 0.93386 0.96531 1.18342 1.08636 0.96028 0.92734 1.20482 0.99082 0.91652 0.99547 1.20762 1.03428 0.98723 0.94122 1.21043 1.02566 0.97376 0.94580 1.20196 0.99628 0.91649 0.98795 1.18617 1.03951 0.89703 0.92772 1.40328 1.37656 1.09006 1.04749 1.20322 1.47424 1.01228 0.79890 0.85803 1.26518 0.92163 0.95138 1.05385 1.70103 1.30161 1.09430 1.38529 0.84933 0.78580 0.80238 0.75201 1.16361 1.19649 1.20123 0.85444 0.85599 0.85608 0.84276 0.86096 0.91670 0.89789 0.83423 0.84633 0.83579 0.84532 0.88104 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 11.09 127.77 1.42 1.82 16 2 N -0.29 -5.54 3.75 -359.64 -1.35 -6.89 16 3 N -0.10 -2.56 13.29 37.02 0.49 -2.06 16 4 N -0.11 -3.38 13.43 37.01 0.50 -2.88 16 5 N -0.33 -9.86 12.36 -50.45 -0.62 -10.49 16 6 C 0.19 4.46 7.39 138.14 1.02 5.48 16 7 C -0.03 -0.58 5.74 29.85 0.17 -0.41 16 8 C 0.07 1.80 5.49 71.98 0.39 2.19 16 9 O -0.33 -11.99 8.03 -57.79 -0.46 -12.45 16 10 C 0.55 23.28 7.90 70.04 0.55 23.83 16 11 O -0.54 -23.10 16.62 19.54 0.32 -22.77 16 12 C -0.05 -2.31 6.76 39.88 0.27 -2.05 16 13 C -0.17 -7.39 10.55 22.64 0.24 -7.15 16 14 C -0.15 -6.83 6.16 -21.34 -0.13 -6.96 16 15 C -0.09 -3.26 10.06 22.32 0.22 -3.04 16 16 C -0.15 -5.04 9.97 22.03 0.22 -4.82 16 17 C -0.14 -4.94 10.02 22.33 0.22 -4.71 16 18 C -0.08 -3.69 8.55 22.38 0.19 -3.50 16 19 C 0.07 3.15 6.08 39.06 0.24 3.39 16 20 N -0.25 -12.54 2.83 -331.41 -0.94 -13.47 16 21 C -0.36 -16.93 8.73 84.10 0.73 -16.20 16 22 H 0.12 5.34 6.88 -2.91 -0.02 5.32 16 23 C 0.02 0.80 4.44 84.96 0.38 1.17 16 24 N -0.85 -42.00 10.89 21.67 0.24 -41.76 16 25 Si 0.99 34.27 29.59 68.60 2.03 36.30 16 26 H -0.24 -7.46 7.11 99.48 0.71 -6.76 16 27 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 28 H -0.28 -9.59 7.11 99.48 0.71 -8.88 16 29 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.13 0.52 7.75 -2.38 -0.02 0.50 16 32 H 0.14 1.86 7.81 -2.39 -0.02 1.84 16 33 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 36 H 0.15 5.90 8.06 -2.91 -0.02 5.87 16 37 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 40 H 0.10 4.64 6.44 -2.91 -0.02 4.63 16 41 H 0.28 12.98 8.31 -92.71 -0.77 12.21 16 Total: -1.00 -69.88 361.10 7.43 -62.45 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 1.08 Total: 24.96 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 6.14 Total: -10.94 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -1.68 Total: -77.55 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.14 Total: -35.22 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.30 kcal Total: -69.88 7.43 -62.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869388087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.002 kcal (2) G-P(sol) polarization free energy of solvation -69.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds