Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48497 * 109.47217 * 239.99895 * 3 2 1 5 5 H 1.48496 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47255 * 119.99710 * 3 2 1 7 7 C 1.37878 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99877 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99995 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00447 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99728 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00555 * 179.97438 * 11 10 9 14 14 O 1.45198 * 109.47084 * 180.02562 * 13 11 10 15 15 C 1.34231 * 116.99906 * 180.02562 * 14 13 11 16 16 O 1.20831 * 120.00058 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00277 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47023 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47023 * 179.97438 * 18 17 15 20 20 C 1.36130 * 120.17091 * 265.00123 * 19 18 17 21 21 C 1.39333 * 120.98770 * 180.23690 * 20 19 18 22 22 C 1.36122 * 120.98705 * 359.43812 * 21 20 19 23 23 C 1.40503 * 119.65379 * 0.57947 * 22 21 20 24 24 C 1.40551 * 121.28531 * 179.74037 * 23 22 21 25 25 C 1.36089 * 119.65002 * 179.97438 * 24 23 22 26 26 C 1.39379 * 120.99662 * 0.02562 * 25 24 23 27 27 C 1.36088 * 120.99109 * 359.95651 * 26 25 24 28 28 C 1.40500 * 120.17476 * 84.97208 * 19 18 17 29 29 H 0.97001 * 119.99852 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47246 * 60.00571 * 9 7 2 31 31 H 1.09004 * 109.47375 * 300.00605 * 9 7 2 32 32 H 0.97005 * 119.99928 * 359.97438 * 10 9 7 33 33 H 1.09002 * 109.46854 * 59.99778 * 13 11 10 34 34 H 1.08998 * 109.46685 * 300.00061 * 13 11 10 35 35 H 1.08996 * 109.46870 * 59.99088 * 17 15 14 36 36 H 1.08996 * 109.46717 * 299.99603 * 17 15 14 37 37 H 1.08996 * 109.47867 * 59.99913 * 18 17 15 38 38 H 1.09003 * 109.46912 * 299.99757 * 18 17 15 39 39 H 1.08002 * 119.50229 * 359.94895 * 20 19 18 40 40 H 1.08000 * 119.50342 * 179.71952 * 21 20 19 41 41 H 1.08003 * 120.17549 * 180.28394 * 22 21 20 42 42 H 1.07997 * 120.17348 * 359.92136 * 24 23 22 43 43 H 1.08001 * 119.50325 * 179.97438 * 25 24 23 44 44 H 1.07993 * 119.50671 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.17518 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0011 13 6 2.7329 -6.0289 -0.0016 14 8 2.0069 -7.2863 -0.0027 15 6 2.7379 -8.4121 -0.0028 16 8 3.9445 -8.3489 -0.0025 17 6 2.0537 -9.7548 -0.0034 18 6 3.1074 -10.8641 -0.0040 19 6 2.4232 -12.2069 -0.0039 20 6 2.2045 -12.8632 1.1685 21 6 1.5779 -14.1075 1.1879 22 6 1.1562 -14.6979 0.0362 23 6 1.3650 -14.0510 -1.1935 24 6 0.9484 -14.6317 -2.4037 25 6 1.1671 -13.9755 -3.5757 26 6 1.7997 -12.7337 -3.5958 27 6 2.2163 -12.1408 -2.4440 28 6 2.0072 -12.7876 -1.2138 29 1 -0.4850 0.8401 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 3.1566 -3.4355 -0.0009 33 1 3.3597 -5.9715 0.8883 34 1 3.3595 -5.9707 -0.8917 35 1 1.4311 -9.8449 -0.8935 36 1 1.4308 -9.8455 0.8864 37 1 3.7304 -10.7741 0.8858 38 1 3.7300 -10.7732 -0.8941 39 1 2.5256 -12.4147 2.0970 40 1 1.4206 -14.6091 2.1314 41 1 0.6678 -15.6607 0.0669 42 1 0.4581 -15.5939 -2.4036 43 1 0.8464 -14.4241 -4.5043 44 1 1.9614 -12.2344 -4.5397 45 1 2.7048 -11.1780 -2.4748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869859087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = -93.182747 kcal Electronic energy + Delta-G solvation = -27157.784108 eV Core-core repulsion = 23104.538305 eV Total energy + Delta-G solvation = -4053.245803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.99173 -40.49041 -38.75404 -37.08031 -36.46656 -34.92066 -34.26176 -32.42609 -31.73945 -30.62960 -29.72521 -28.94511 -26.78861 -25.21385 -23.57284 -23.31441 -22.62097 -21.27140 -20.47748 -19.94826 -18.00127 -17.81486 -17.49263 -17.28566 -16.81002 -16.52637 -16.21041 -15.46308 -15.24745 -15.08724 -14.71942 -14.55576 -14.31882 -14.01862 -13.97426 -13.70081 -13.45382 -13.07573 -13.01292 -12.76499 -12.72965 -12.31702 -12.16078 -11.99464 -11.78134 -11.62916 -11.54989 -11.18609 -11.04628 -11.04358 -10.91671 -10.71350 -10.65369 -10.35683 -10.14835 -9.46880 -9.19399 -8.94403 -8.79039 -8.18714 -8.00374 -6.20503 -4.28176 0.17267 0.68496 1.67952 2.07977 2.40791 2.67994 3.16198 3.23518 3.28485 3.29883 3.75841 3.92732 4.20596 4.32369 4.39184 4.49217 4.53405 4.59605 4.68531 4.75487 4.81615 4.88810 5.03252 5.05510 5.10288 5.15420 5.16647 5.21868 5.25383 5.32937 5.36462 5.44193 5.63736 5.72806 5.80900 5.89068 5.91481 6.11258 6.21204 6.31347 6.33104 6.49097 6.67282 7.21089 7.29138 7.44413 7.56914 7.65394 7.90843 8.48395 8.69676 8.94861 9.38198 10.89545 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023944 B = 0.001592 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.090696 B =17582.059136 C =17965.948388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.534 6.534 13 C 0.048 3.952 14 O -0.329 6.329 15 C 0.461 3.539 16 O -0.512 6.512 17 C -0.109 4.109 18 C -0.071 4.071 19 C -0.069 4.069 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.110 4.110 23 C -0.051 4.051 24 C -0.108 4.108 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.108 4.108 28 C -0.045 4.045 29 H 0.267 0.733 30 H 0.030 0.970 31 H 0.029 0.971 32 H 0.393 0.607 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.622 -31.351 -2.164 31.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.412 6.412 13 C -0.029 4.029 14 O -0.243 6.243 15 C 0.304 3.696 16 O -0.401 6.401 17 C -0.147 4.147 18 C -0.108 4.108 19 C -0.069 4.069 20 C -0.129 4.129 21 C -0.131 4.131 22 C -0.128 4.128 23 C -0.051 4.051 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.134 4.134 27 C -0.125 4.125 28 C -0.045 4.045 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.226 0.774 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.922 -31.290 -2.163 31.748 hybrid contribution 0.992 1.088 -0.010 1.472 sum 5.913 -30.202 -2.173 30.852 Atomic orbital electron populations 1.69965 1.06117 1.27533 1.48548 1.24953 0.94941 0.99488 0.94586 0.86441 0.79388 0.82163 0.78719 1.20040 1.21034 1.20032 1.21173 0.93301 0.90319 1.53693 0.91808 1.19175 0.88165 0.81521 0.98035 1.46368 1.11512 1.05369 1.72424 1.19902 0.89136 0.84006 0.78779 1.90712 1.16335 1.84556 1.49561 1.22868 0.94379 0.81109 1.04562 1.86575 1.40481 1.14055 1.83234 1.23771 0.86566 0.86928 0.72313 1.90671 1.15570 1.88048 1.45816 1.21384 0.99391 0.87114 1.06762 1.20426 0.96374 0.88885 1.05104 1.19617 0.98802 0.96005 0.92520 1.20805 0.99204 0.95191 0.97736 1.20849 0.98330 0.95465 0.98424 1.21029 1.00159 0.99855 0.91711 1.18089 0.98851 0.94189 0.93982 1.21030 0.99942 0.99879 0.91749 1.20886 0.98952 0.95335 0.98208 1.20907 0.98369 0.95557 0.98525 1.21146 0.99758 0.99965 0.91674 1.17941 0.98942 0.94197 0.93389 0.92305 0.95245 0.95254 0.77432 0.88506 0.88521 0.87299 0.87126 0.89497 0.89571 0.85684 0.85843 0.85638 0.85630 0.85974 0.85833 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.77 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.55 -14.61 9.28 -34.44 -0.32 -14.93 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 10 N -0.71 -14.55 5.55 -61.47 -0.34 -14.89 16 11 C 0.50 9.96 7.91 -10.99 -0.09 9.87 16 12 O -0.53 -13.06 16.50 -14.11 -0.23 -13.29 16 13 C 0.05 0.73 5.94 36.01 0.21 0.94 16 14 O -0.33 -5.06 9.75 -45.90 -0.45 -5.51 16 15 C 0.46 5.83 7.96 36.01 0.29 6.12 16 16 O -0.51 -7.28 15.73 -18.75 -0.30 -7.58 16 17 C -0.11 -0.99 5.79 -27.88 -0.16 -1.15 16 18 C -0.07 -0.59 4.03 -27.88 -0.11 -0.70 16 19 C -0.07 -0.59 5.14 -104.53 -0.54 -1.13 16 20 C -0.11 -0.85 9.57 -39.93 -0.38 -1.23 16 21 C -0.11 -0.79 9.95 -39.93 -0.40 -1.19 16 22 C -0.11 -0.80 9.77 -39.49 -0.39 -1.19 16 23 C -0.05 -0.44 5.74 -106.83 -0.61 -1.06 16 24 C -0.11 -0.80 9.77 -39.48 -0.39 -1.19 16 25 C -0.12 -0.83 9.95 -39.93 -0.40 -1.22 16 26 C -0.12 -0.89 9.95 -39.93 -0.40 -1.28 16 27 C -0.11 -0.92 9.19 -39.48 -0.36 -1.28 16 28 C -0.04 -0.41 5.74 -106.84 -0.61 -1.02 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 33 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 35 H 0.11 0.92 8.05 -51.93 -0.42 0.50 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.71 8.00 -51.93 -0.42 0.29 16 38 H 0.09 0.73 6.66 -51.93 -0.35 0.39 16 39 H 0.13 0.75 8.05 -52.49 -0.42 0.33 16 40 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 42 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 43 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.13 0.98 6.49 -52.48 -0.34 0.64 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -34.42 390.70 -10.53 -44.95 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.04 Total: 3.31 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -4.78 Total: -3.44 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.40 Total: -39.92 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.98 Total: -26.38 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.42 -10.53 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869859087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.229 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds