Wall clock time and date at job start Sat Apr 11 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48497 * 109.47217 * 239.99895 * 3 2 1 5 5 H 1.48496 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47255 * 119.99710 * 3 2 1 7 7 C 1.37878 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99877 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99995 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00447 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99728 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00555 * 179.97438 * 11 10 9 14 14 O 1.45198 * 109.47084 * 180.02562 * 13 11 10 15 15 C 1.34231 * 116.99906 * 180.02562 * 14 13 11 16 16 O 1.20831 * 120.00058 * 359.97438 * 15 14 13 17 17 C 1.50704 * 120.00277 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47023 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47023 * 179.97438 * 18 17 15 20 20 C 1.36130 * 120.17091 * 265.00123 * 19 18 17 21 21 C 1.39333 * 120.98770 * 180.23690 * 20 19 18 22 22 C 1.36122 * 120.98705 * 359.43812 * 21 20 19 23 23 C 1.40503 * 119.65379 * 0.57947 * 22 21 20 24 24 C 1.40551 * 121.28531 * 179.74037 * 23 22 21 25 25 C 1.36089 * 119.65002 * 179.97438 * 24 23 22 26 26 C 1.39379 * 120.99662 * 0.02562 * 25 24 23 27 27 C 1.36088 * 120.99109 * 359.95651 * 26 25 24 28 28 C 1.40500 * 120.17476 * 84.97208 * 19 18 17 29 29 H 0.97001 * 119.99852 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47246 * 60.00571 * 9 7 2 31 31 H 1.09004 * 109.47375 * 300.00605 * 9 7 2 32 32 H 0.97005 * 119.99928 * 359.97438 * 10 9 7 33 33 H 1.09002 * 109.46854 * 59.99778 * 13 11 10 34 34 H 1.08998 * 109.46685 * 300.00061 * 13 11 10 35 35 H 1.08996 * 109.46870 * 59.99088 * 17 15 14 36 36 H 1.08996 * 109.46717 * 299.99603 * 17 15 14 37 37 H 1.08996 * 109.47867 * 59.99913 * 18 17 15 38 38 H 1.09003 * 109.46912 * 299.99757 * 18 17 15 39 39 H 1.08002 * 119.50229 * 359.94895 * 20 19 18 40 40 H 1.08000 * 119.50342 * 179.71952 * 21 20 19 41 41 H 1.08003 * 120.17549 * 180.28394 * 22 21 20 42 42 H 1.07997 * 120.17348 * 359.92136 * 24 23 22 43 43 H 1.08001 * 119.50325 * 179.97438 * 25 24 23 44 44 H 1.07993 * 119.50671 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.17518 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0011 13 6 2.7329 -6.0289 -0.0016 14 8 2.0069 -7.2863 -0.0027 15 6 2.7379 -8.4121 -0.0028 16 8 3.9445 -8.3489 -0.0025 17 6 2.0537 -9.7548 -0.0034 18 6 3.1074 -10.8641 -0.0040 19 6 2.4232 -12.2069 -0.0039 20 6 2.2045 -12.8632 1.1685 21 6 1.5779 -14.1075 1.1879 22 6 1.1562 -14.6979 0.0362 23 6 1.3650 -14.0510 -1.1935 24 6 0.9484 -14.6317 -2.4037 25 6 1.1671 -13.9755 -3.5757 26 6 1.7997 -12.7337 -3.5958 27 6 2.2163 -12.1408 -2.4440 28 6 2.0072 -12.7876 -1.2138 29 1 -0.4850 0.8401 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 3.1566 -3.4355 -0.0009 33 1 3.3597 -5.9715 0.8883 34 1 3.3595 -5.9707 -0.8917 35 1 1.4311 -9.8449 -0.8935 36 1 1.4308 -9.8455 0.8864 37 1 3.7304 -10.7741 0.8858 38 1 3.7300 -10.7732 -0.8941 39 1 2.5256 -12.4147 2.0970 40 1 1.4206 -14.6091 2.1314 41 1 0.6678 -15.6607 0.0669 42 1 0.4581 -15.5939 -2.4036 43 1 0.8464 -14.4241 -4.5043 44 1 1.9614 -12.2344 -4.5397 45 1 2.7048 -11.1780 -2.4748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869859087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:40 Heat of formation + Delta-G solvation = -112.068446 kcal Electronic energy + Delta-G solvation = -27158.603053 eV Core-core repulsion = 23104.538305 eV Total energy + Delta-G solvation = -4054.064748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.84933 -41.31540 -40.37975 -37.83315 -37.41677 -36.19170 -35.57304 -34.42350 -32.42094 -31.16946 -30.89892 -29.94324 -28.49875 -26.06319 -24.58824 -24.09919 -23.85964 -22.16106 -21.65369 -21.20562 -19.24763 -18.90346 -18.39357 -18.06809 -17.85424 -17.70562 -17.17084 -16.98125 -16.80568 -16.38530 -15.92158 -15.58268 -15.11594 -14.92568 -14.78496 -14.58107 -14.39378 -14.20465 -14.05929 -13.92740 -13.78021 -13.59492 -13.43684 -13.17921 -12.96192 -12.69851 -12.68533 -12.24712 -12.24472 -12.12532 -11.90391 -11.77436 -11.71974 -11.53750 -11.51556 -10.92668 -10.81052 -10.73020 -9.94077 -9.50638 -8.74365 -8.29785 -6.46691 -0.38319 0.12041 1.06635 1.08094 1.32719 1.44840 1.47797 1.54542 1.56363 2.12194 2.34154 2.57573 3.05300 3.18880 3.49369 3.68404 3.77072 3.82198 3.94684 4.02121 4.02391 4.05404 4.13536 4.17009 4.21266 4.36506 4.48560 4.50989 4.52009 4.67108 4.76272 4.88822 5.04925 5.06891 5.10925 5.21011 5.26794 5.29201 5.35067 5.39127 5.41126 5.56210 5.62396 5.66462 5.75348 5.81461 5.95462 6.14208 6.57148 6.62373 6.77909 7.19901 7.35094 8.82045 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023944 B = 0.001592 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.090696 B =17582.059136 C =17965.948388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.498 3.502 12 O -0.585 6.585 13 C 0.060 3.940 14 O -0.351 6.351 15 C 0.466 3.534 16 O -0.527 6.527 17 C -0.102 4.102 18 C -0.061 4.061 19 C -0.083 4.083 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.073 4.073 24 C -0.113 4.113 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.126 4.126 28 C -0.063 4.063 29 H 0.269 0.731 30 H -0.008 1.008 31 H -0.008 1.008 32 H 0.413 0.587 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.418 -32.300 -2.007 33.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.284 3.716 12 O -0.465 6.465 13 C -0.017 4.017 14 O -0.266 6.266 15 C 0.310 3.690 16 O -0.416 6.416 17 C -0.139 4.139 18 C -0.099 4.099 19 C -0.083 4.083 20 C -0.133 4.133 21 C -0.138 4.138 22 C -0.132 4.132 23 C -0.073 4.073 24 C -0.131 4.131 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.144 4.144 28 C -0.063 4.063 29 H 0.078 0.922 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.249 0.751 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.161 0.839 44 H 0.155 0.845 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.777 -32.271 -2.007 33.036 hybrid contribution 0.391 1.260 -0.066 1.321 sum 7.169 -31.011 -2.074 31.896 Atomic orbital electron populations 1.70128 1.08243 1.28697 1.49724 1.26058 0.95781 1.03881 0.93799 0.85192 0.77880 0.76572 0.79482 1.18695 1.21156 1.18670 1.21588 0.94440 0.90412 1.53232 0.89573 1.18628 0.88589 0.83819 0.94584 1.46046 1.11716 1.04752 1.72499 1.20741 0.89330 0.84764 0.76739 1.90687 1.18988 1.85332 1.51528 1.22731 0.92514 0.79332 1.07117 1.86579 1.41601 1.14679 1.83763 1.24339 0.86420 0.86906 0.71326 1.90662 1.16227 1.88103 1.46622 1.21477 0.99615 0.85197 1.07643 1.20328 0.95975 0.88637 1.04916 1.19635 0.99689 0.96166 0.92808 1.21081 0.98740 0.95489 0.98018 1.21154 0.97913 0.95346 0.99383 1.21340 0.99866 1.00626 0.91340 1.18415 0.99366 0.94417 0.95123 1.21344 0.99642 1.00701 0.91433 1.21186 0.98728 0.95194 0.99164 1.21187 0.98038 0.95975 0.98900 1.21280 1.00626 1.00407 0.92044 1.18167 0.99485 0.94806 0.93815 0.92196 0.98983 0.98976 0.75113 0.85782 0.85844 0.86676 0.85815 0.89316 0.90097 0.84257 0.83654 0.83552 0.83529 0.83898 0.84498 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.99 41.76 29.54 68.60 2.03 43.78 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.56 -29.88 9.28 25.60 0.24 -29.64 16 8 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.27 14.39 5.43 85.63 0.46 14.85 16 10 N -0.70 -28.82 5.55 -466.79 -2.59 -31.41 16 11 C 0.50 19.98 7.91 87.66 0.69 20.67 16 12 O -0.58 -29.54 16.50 15.76 0.26 -29.28 16 13 C 0.06 1.70 5.94 71.24 0.42 2.13 16 14 O -0.35 -10.48 9.75 -45.07 -0.44 -10.92 16 15 C 0.47 11.22 7.96 71.24 0.57 11.78 16 16 O -0.53 -14.14 15.73 21.95 0.35 -13.80 16 17 C -0.10 -1.76 5.79 29.85 0.17 -1.59 16 18 C -0.06 -0.97 4.03 29.85 0.12 -0.85 16 19 C -0.08 -1.36 5.14 -19.80 -0.10 -1.46 16 20 C -0.12 -1.61 9.57 22.04 0.21 -1.40 16 21 C -0.12 -1.49 9.95 22.04 0.22 -1.27 16 22 C -0.11 -1.50 9.77 22.33 0.22 -1.29 16 23 C -0.07 -1.21 5.74 -21.30 -0.12 -1.34 16 24 C -0.11 -1.55 9.77 22.33 0.22 -1.33 16 25 C -0.12 -1.65 9.95 22.04 0.22 -1.43 16 26 C -0.12 -1.83 9.95 22.04 0.22 -1.61 16 27 C -0.13 -2.14 9.19 22.33 0.21 -1.93 16 28 C -0.06 -1.13 5.74 -21.30 -0.12 -1.25 16 29 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 32 H 0.41 13.64 8.32 -92.70 -0.77 12.86 16 33 H 0.12 2.91 8.13 -2.39 -0.02 2.89 16 34 H 0.12 2.90 8.13 -2.39 -0.02 2.88 16 35 H 0.12 1.88 8.05 -2.39 -0.02 1.86 16 36 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.35 8.00 -2.39 -0.02 1.33 16 38 H 0.08 1.35 6.66 -2.39 -0.02 1.34 16 39 H 0.14 1.44 8.05 -2.91 -0.02 1.41 16 40 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 44 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 45 H 0.13 2.02 6.49 -2.91 -0.02 2.00 16 Total: -1.00 -76.65 390.70 4.44 -72.22 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.25 Total: 20.85 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 4.31 Total: 3.76 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -2.30 Total: -86.61 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: 0.17 Total: -54.00 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -76.65 4.44 -72.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869859087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.853 kcal (2) G-P(sol) polarization free energy of solvation -76.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds